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niman
PostPosted: Thu Apr 26, 2012 6:18 am 
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gsgs wrote:
perfect human match in 5 Illinois swines, full genomes


the 3 Illinois swine from 2011 match very well in all 8 segments to
A/IN/10/2011/10/22 , isolated 2 days later


the 2 Illinois swine from 2012/01/05 are reassorted 123568+47 or 12368+457

Thread on matches was started earlier

viewtopic.php?f=5&t=8066&start=1

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niman
PostPosted: Thu Apr 26, 2012 6:20 am 
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Location: Pittsburgh, PA USA
gsgs wrote:
perfect human match in 5 Illinois swines, full genomes


the 3 Illinois swine from 2011 match very well in all 8 segments to
A/IN/10/2011/10/22 , isolated 2 days later


the 2 Illinois swine from 2012/01/05 are reassorted 123568+47 or 12368+457

None match WV or UT (which have N2 from swine H3N2v)

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niman
PostPosted: Fri Apr 27, 2012 10:13 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 28245
Location: Pittsburgh, PA USA
gsgs wrote:
perfect human match in 5 Illinois swines, full genomes


the 3 Illinois swine from 2011 match very well in all 8 segments to
A/IN/10/2011/10/22 , isolated 2 days later


the 2 Illinois swine from 2012/01/05 are reassorted 123568+47 or 12368+457

The 2011 sequences from Illinois swine are virtually identical to Iowa match, A/swine/Iowa/A01202640/2011 (and Iowa is adjacent to Illinois).

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niman
PostPosted: Mon Apr 30, 2012 7:46 pm 
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JQ858399 Swine 4 H1N2 USA 2010/09/02 1698 Influenza A virus (A/swine/Illinois/A01076221/2010(H1N2)) yes
JQ858434 Swine 6 H1N2 USA 2010/09/02 1410 Influenza A virus (A/swine/Illinois/A01076221/2010(H1N2)) yes
JQ858400 Swine 4 H1N2 USA 2010/09/02 1698 Influenza A virus (A/swine/Illinois/A01076223/2010(H1N2)) yes
JQ858435 Swine 6 H1N2 USA 2010/09/02 1410 Influenza A virus (A/swine/Illinois/A01076223/2010(H1N2)) yes
JQ858401 Swine 4 H1N2 USA 2010/09/27 1701 Influenza A virus (A/swine/Illinois/A01076354/2010(H1N2)) yes
JQ858436 Swine 6 H1N2 USA 2010/09/27 1410 Influenza A virus (A/swine/Illinois/A01076354/2010(H1N2)) yes
JQ858402 Swine 4 H1N2 USA 2010/09/27 1701 Influenza A virus (A/swine/Illinois/A01076380/2010(H1N2)) yes
JQ858437 Swine 6 H1N2 USA 2010/09/27 1410 Influenza A virus (A/swine/Illinois/A01076380/2010(H1N2)) yes
JQ858403 Swine 4 H1N2 USA 2010/11/14 1698 Influenza A virus (A/swine/Illinois/A01076955/2010(H1N2)) yes
JQ858438 Swine 6 H1N2 USA 2010/11/14 1410 Influenza A virus (A/swine/Illinois/A01076955/2010(H1N2)) yes
JQ858404 Swine 4 H1N2 USA 2011/09/01 1698 Influenza A virus (A/swine/Illinois/A01116207/2011(H1N2)) yes
JQ858439 Swine 6 H1N2 USA 2011/09/01 1410 Influenza A virus (A/swine/Illinois/A01116207/2011(H1N2)) yes
JQ858405 Swine 4 H1N2 USA 2011/09/01 1698 Influenza A virus (A/swine/Illinois/A01116209/2011(H1N2)) yes
JQ858440 Swine 6 H1N2 USA 2011/09/01 1410 Influenza A virus (A/swine/Illinois/A01116209/2011(H1N2)) yes
JQ858406 Swine 4 H1N2 USA 2011/11/09 1698 Influenza A virus (A/swine/Illinois/A01116945/2011(H1N2)) yes
JQ858441 Swine 6 H1N2 USA 2011/11/09 1410 Influenza A virus (A/swine/Illinois/A01116945/2011(H1N2)) yes
JQ858407 Swine 4 H1N2 USA 2011/11/09 1698 Influenza A virus (A/swine/Illinois/A01116947/2011(H1N2)) yes
JQ858442 Swine 6 H1N2 USA 2011/11/09 1410 Influenza A virus (A/swine/Illinois/A01116947/2011(H1N2)) yes
JQ858408 Swine 4 H1N2 USA 2011/01/31 1698 Influenza A virus (A/swine/Illinois/A01134264/2011(H1N2)) yes
JQ858443 Swine 6 H1N2 USA 2011/01/31 1410 Influenza A virus (A/swine/Illinois/A01134264/2011(H1N2)) yes
JQ858409 Swine 4 H1N2 USA 2011/01/31 1698 Influenza A virus (A/swine/Illinois/A01134269/2011(H1N2)) yes
JQ858444 Swine 6 H1N2 USA 2011/01/31 1410 Influenza A virus (A/swine/Illinois/A01134269/2011(H1N2)) yes
JQ858410 Swine 4 H1N2 USA 2011/02/10 1698 Influenza A virus (A/swine/Illinois/A01134426/2011(H1N2)) yes
JQ858445 Swine 6 H1N2 USA 2011/02/10 1410 Influenza A virus (A/swine/Illinois/A01134426/2011(H1N2)) yes
JQ858411 Swine 4 H1N2 USA 2011/02/10 1698 Influenza A virus (A/swine/Illinois/A01134433/2011(H1N2)) yes
JQ858446 Swine 6 H1N2 USA 2011/02/10 1410 Influenza A virus (A/swine/Illinois/A01134433/2011(H1N2)) yes
JQ858412 Swine 4 H1N2 USA 2011/02/22 1698 Influenza A virus (A/swine/Illinois/A01134482/2011(H1N2)) yes
JQ858447 Swine 6 H1N2 USA 2011/02/22 1410 Influenza A virus (A/swine/Illinois/A01134482/2011(H1N2)) yes
JQ858413 Swine 4 H1N2 USA 2011/02/22 1698 Influenza A virus (A/swine/Illinois/A01134581/2011(H1N2)) yes
JQ858448 Swine 6 H1N2 USA 2011/02/22 1410 Influenza A virus (A/swine/Illinois/A01134581/2011(H1N2)) yes
JQ858414 Swine 4 H1N2 USA 2011/03/03 1698 Influenza A virus (A/swine/Illinois/A01134653/2011(H1N2)) yes
JQ858449 Swine 6 H1N2 USA 2011/03/03 1410 Influenza A virus (A/swine/Illinois/A01134653/2011(H1N2)) yes
JQ858415 Swine 4 H1N2 USA 2011/03/03 1698 Influenza A virus (A/swine/Illinois/A01134654/2011(H1N2)) yes
JQ858450 Swine 6 H1N2 USA 2011/03/03 1410 Influenza A virus (A/swine/Illinois/A01134654/2011(H1N2)) yes
JQ858416 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134703/2011(H1N2)) yes
JQ858451 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134703/2011(H1N2)) yes
JQ858417 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134715/2011(H1N2)) yes
JQ858452 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134715/2011(H1N2)) yes
JQ858418 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134719/2011(H1N2)) yes
JQ858453 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134719/2011(H1N2)) yes
JQ858419 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134721/2011(H1N2)) yes
JQ858454 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134721/2011(H1N2)) yes
JQ858420 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134729/2011(H1N2)) yes
JQ858455 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134729/2011(H1N2)) yes
JQ858421 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134736/2011(H1N2)) yes
JQ858456 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134736/2011(H1N2)) yes
JQ858422 Swine 4 H1N2 USA 2011/03/10 1698 Influenza A virus (A/swine/Illinois/A01134738/2011(H1N2)) yes
JQ858457 Swine 6 H1N2 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01134738/2011(H1N2)) yes
JQ858423 Swine 4 H1N2 USA 2011/04/06 1698 Influenza A virus (A/swine/Illinois/A01201093/2011(H1N2)) yes
JQ858458 Swine 6 H1N2 USA 2011/04/06 1410 Influenza A virus (A/swine/Illinois/A01201093/2011(H1N2)) yes
JQ858424 Swine 4 H1N2 USA 2011/04/13 1698 Influenza A virus (A/swine/Illinois/A01201111/2011(H1N2)) yes
JQ858459 Swine 6 H1N2 USA 2011/04/13 1410 Influenza A virus (A/swine/Illinois/A01201111/2011(H1N2)) yes
JQ858425 Swine 4 H1N2 USA 2011/04/19 1698 Influenza A virus (A/swine/Illinois/A01201153/2011(H1N2)) yes
JQ858460 Swine 6 H1N2 USA 2011/04/19 1410 Influenza A virus (A/swine/Illinois/A01201153/2011(H1N2)) yes
JQ858426 Swine 4 H1N2 USA 2011/04/19 1698 Influenza A virus (A/swine/Illinois/A01201154/2011(H1N2)) yes
JQ858461 Swine 6 H1N2 USA 2011/04/19 1410 Influenza A virus (A/swine/Illinois/A01201154/2011(H1N2)) yes
JQ858427 Swine 4 H1N2 USA 2011/05/02 1698 Influenza A virus (A/swine/Illinois/A01201284/2011(H1N2)) yes
JQ858462 Swine 6 H1N2 USA 2011/05/02 1410 Influenza A virus (A/swine/Illinois/A01201284/2011(H1N2)) yes
JQ858428 Swine 4 H1N2 USA 2011/05/02 1698 Influenza A virus (A/swine/Illinois/A01201287/2011(H1N2)) yes
JQ858463 Swine 6 H1N2 USA 2011/05/02 1410 Influenza A virus (A/swine/Illinois/A01201287/2011(H1N2)) yes
JQ858429 Swine 4 H1N2 USA 2011/05/09 1698 Influenza A virus (A/swine/Illinois/A01201330/2011(H1N2)) yes
JQ858464 Swine 6 H1N2 USA 2011/05/09 1410 Influenza A virus (A/swine/Illinois/A01201330/2011(H1N2)) yes
JQ858430 Swine 4 H1N2 USA 2011/05/09 1698 Influenza A virus (A/swine/Illinois/A01201331/2011(H1N2)) yes
JQ858465 Swine 6 H1N2 USA 2011/05/09 1410 Influenza A virus (A/swine/Illinois/A01201331/2011(H1N2)) yes
JQ858431 Swine 4 H1N2 USA 2011/05/23 1698 Influenza A virus (A/swine/Illinois/A01201484/2011(H1N2)) yes
JQ858466 Swine 6 H1N2 USA 2011/05/23 1410 Influenza A virus (A/swine/Illinois/A01201484/2011(H1N2)) yes
JQ858432 Swine 4 H1N2 USA 2011/05/23 1698 Influenza A virus (A/swine/Illinois/A01201487/2011(H1N2)) yes
JQ858467 Swine 6 H1N2 USA 2011/05/23 1410 Influenza A virus (A/swine/Illinois/A01201487/2011(H1N2)) yes
JQ858433 Swine 4 H1N2 USA 2011/05/25 1698 Influenza A virus (A/swine/Illinois/A01201512/2011(H1N2)) yes
JQ858468 Swine 6 H1N2 USA 2011/05/25 1410 Influenza A virus (A/swine/Illinois/A01201512/2011(H1N2))

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