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niman
PostPosted: Fri Apr 13, 2012 12:47 pm 
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Posts: 28252
Location: Pittsburgh, PA USA
EPI366024 A/Utah/10/2012 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI344399 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335633 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI333147 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI351688 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI351682 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI346495 A/Minnesota/19/2011 (A/H1N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI335625 A/Pennsylvania/10/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI335622 A/Pennsylvania/11/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI335614 A/Pennsylvania/09/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI314794 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI312978 A/Pennsylvania/40/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI293969 A/Minnesota/11/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI291889 A/Wisconsin/12/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI342599 A/swine/NY/A01104005/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI302684 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI302681 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI302669 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291861 A/Pennsylvania/14/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291834 A/Minnesota/09/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI244304 A/Kansas/13/2009 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI346434 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI346426 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI346418 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI342698 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI342690 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI291819 A/Michigan/09/2007 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI339165 A/Maine/06/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%)
EPI302672 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 833/839 (99%)
EPI351658 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%)
EPI344391 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%)
EPI344384 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%)
EPI340978 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%)
EPI346487 A/West Virginia/06/2011 (A/H3N2) segment 8 (NS) 1504.3 0.000000e+00 822/826 (99%)
EPI323271 A/swine/Minnesota/66960/2006 (A/H3N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)
EPI342682 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1480.3 0.000000e+00 811/816 (99%)
EPI347217 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI291903 A/Ohio/02/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI291854 A/Ohio/01/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI173662 A/swine/OH/511445/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI337461 A/swine//Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI291784 A/Illinois/09/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI281223 A/swine/Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI15030 A/SW/IN/14810-S/01 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI15028 A/SW/IN/14810-T/01 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI307933 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%)
EPI291960 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI291952 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI222648 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%)
EPI222639 A/swine/Kansas/77778/2007 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%)
EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164075 A/swine/Korea/CAS09/2006 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI337360 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI335025 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI291963 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164074 A/swine/Korea/CAS07/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164073 A/swine/Korea/CAN04/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164062 A/swine/Korea/CAS08/2005 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%)
EPI25405 A/turkey/North Carolina/12344/03 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI9401 A/Swine/Ohio/891/01 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI164061 A/swine/Korea/CAN01/2004 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI98736 A/swine/IN/PU542/04 (A/H3N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI15276 A/Swine/Korea/CY02/02 (A/H1N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI255765 A/swine/MN/48683/2002 (A/H1N1) segment 8 (NS) 1441.5 0.000000e+00 818/837 (97%)
EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI337345 A/swine/Iowa/01700/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI327283 A/swine/Texas/4199-2/1998 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI291962 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI291958 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI291956 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%)
EPI281221 A/swine/Minnesota/02093/2008 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI222678 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI222655 A/swine/Minnesota/1145/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI220928 A/swine/Texas/050593/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)

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niman
PostPosted: Fri Apr 13, 2012 12:57 pm 
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Location: Pittsburgh, PA USA
Match with WV H3N2 signals H2H transmission.

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niman
PostPosted: Fri Apr 13, 2012 1:14 pm 
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niman wrote:
Match with WV H3N2 signals H2H transmission.

WV and UT constellation has NEVER been reported in swine.

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niman
PostPosted: Fri Apr 13, 2012 1:18 pm 
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Posts: 28252
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/04131 ... UT_WV.html

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niman
PostPosted: Sat Apr 14, 2012 7:54 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 28252
Location: Pittsburgh, PA USA
C1114T T1118C G1141A C1146T (four consecutive polymorphisms that define the N2 lineage)

EPI366029 A/Utah/10/2012 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI361466 A/swine/Iowa/A01049033/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI354963 A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI346922 A/West Virginia/07/2011 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI346492 A/West Virginia/06/2011 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI338575 A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI324814 A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI324813 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI317012 A/swine/Iowa/A01049032/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI317011 A/swine/Iowa/A01049031/2010 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)
EPI314677 A/swine/QC/414/2009 (A/H3N2) segment 6 (NA) 63.9 2.420514e-10 34/34 (100%)

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