Rhiza Labs FluTracker Forum

The USDA has released another series of swine sequences, including a series collected in November, 2011.

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Latest swine sequences from USDA surveillance:

JQ398778 Swine 4 H1N2 USA 2011/05/26 1698 Influenza A virus (A/swine/I/A01202036/2011(H1N2)) yes
JQ398779 Swine 4 H1N2 USA 2011/05/26 1698 Influenza A virus (A/swine/I/A01202037/2011(H1N2)) yes
JQ398761 Swine 6 H1N1 USA 2011/02/16 1410 Influenza A virus (A/swine/Illinois/A01049574/2011(H1N1)) yes
JQ398774 Swine 4 H1N1 USA 2011/02/16 1701 Influenza A virus (A/swine/Illinois/A01049575/2011(H1N1)) yes
JQ398762 Swine 6 H1N1 USA 2011/02/16 1410 Influenza A virus (A/swine/Illinois/A01049575/2011(H1N1)) yes
JQ398763 Swine 6 H1N1 USA 2011/03/10 1410 Influenza A virus (A/swine/Illinois/A01049673/2011(H1N1)) yes
JQ398772 Swine 4 H1N1 USA 2010/12/06 1701 Influenza A virus (A/swine/Iowa/A01049210/2010(H1N1)) yes
JQ398759 Swine 6 H1N1 USA 2010/12/06 1410 Influenza A virus (A/swine/Iowa/A01049210/2010(H1N1)) yes
JQ398748 Swine 7 H1N1 USA 2010/12/06 982 Influenza A virus (A/swine/Iowa/A01049210/2010(H1N1)) yes
JQ398781 Swine 4 H1N2 USA 2011/03/07 1698 Influenza A virus (A/swine/Iowa/A01049645/2011(H1N2)) yes
JQ398764 Swine 6 H1N1 USA 2011/03/28 1410 Influenza A virus (A/swine/Iowa/A01049775/2011(H1N1)) yes
JQ398782 Swine 4 H1N2 USA 2011/04/10 1698 Influenza A virus (A/swine/Iowa/A01049858/2011(H1N2)) yes
JQ398775 Swine 4 H1N2 USA 2011/04/18 1698 Influenza A virus (A/swine/Iowa/A01049863/2011(H1N2)) yes
JQ398776 Swine 4 H1N2 USA 2011/04/18 1698 Influenza A virus (A/swine/Iowa/A01049864/2011(H1N2)) yes
JQ398777 Swine 4 H1N2 USA 2011/05/16 1698 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) yes
JQ398780 Swine 4 H1N1 USA 2011/06/06 1701 Influenza A virus (A/swine/Iowa/A01202056/2011(H1N1)) yes
JQ398783 Swine 4 H1N2 USA 2011/10/10 1698 Influenza A virus (A/swine/Iowa/A01202693/2011(H1N2)) yes
JQ398765 Swine 6 H1N2 USA 2011/10/10 1410 Influenza A virus (A/swine/Iowa/A01202693/2011(H1N2)) yes
JQ398752 Swine 7 H1N2 USA 2011/10/10 979 Influenza A virus (A/swine/Iowa/A01202693/2011(H1N2))
JQ398785 Swine 4 H1N2 USA 2011/10/22 1698 Influenza A virus (A/swine/Iowa/A01202770/2011(H1N2)) yes
JQ398767 Swine 6 H1N2 USA 2011/10/22 1410 Influenza A virus (A/swine/Iowa/A01202770/2011(H1N2)) yes
JQ398756 Swine 7 H1N2 USA 2011/10/22 982 Influenza A virus (A/swine/Iowa/A01202770/2011(H1N2)) yes
JQ398786 Swine 4 H1N2 USA 2011/11/02 1698 Influenza A virus (A/swine/Iowa/A01202794/2011(H1N2)) yes
JQ398768 Swine 6 H1N2 USA 2011/11/02 1410 Influenza A virus (A/swine/Iowa/A01202794/2011(H1N2)) yes
JQ398753 Swine 7 H1N2 USA 2011/11/02 982 Influenza A virus (A/swine/Iowa/A01202794/2011(H1N2)) yes
JQ398787 Swine 4 H1N2 USA 2011/11/02 1698 Influenza A virus (A/swine/Iowa/A01202795/2011(H1N2)) yes
JQ398769 Swine 6 H1N2 USA 2011/11/02 1410 Influenza A virus (A/swine/Iowa/A01202795/2011(H1N2)) yes
JQ398754 Swine 7 H1N2 USA 2011/11/02 982 Influenza A virus (A/swine/Iowa/A01202795/2011(H1N2)) yes
JQ398773 Swine 4 H1N2 USA 2011/01/19 1698 Influenza A virus (A/swine/Mississippi/A01049443/2011(H1N2)) yes
JQ398760 Swine 6 H1N2 USA 2011/01/19 1410 Influenza A virus (A/swine/Mississippi/A01049443/2011(H1N2)) yes
JQ398749 Swine 7 H1N2 USA 2011/01/19 982 Influenza A virus (A/swine/Mississippi/A01049443/2011(H1N2)) yes
JQ398788 Swine 4 H3N2 USA 2011/11/15 1701 Influenza A virus (A/swine/North Carolina/A01048779/2011(H3N2)) yes
JQ398770 Swine 6 H3N2 USA 2011/11/15 1410 Influenza A virus (A/swine/North Carolina/A01048779/2011(H3N2)) yes
JQ398757 Swine 7 H3N2 USA 2011/11/15 982 Influenza A virus (A/swine/North Carolina/A01048779/2011(H3N2)) yes
JQ398789 Swine 4 H1N2 USA 2011/11/15 1698 Influenza A virus (A/swine/North Carolina/A01048807/2011(H1N2)) yes
JQ398771 Swine 6 H1N2 USA 2011/11/15 1410 Influenza A virus (A/swine/North Carolina/A01048807/2011(H1N2)) yes
JQ398758 Swine 7 H1N2 USA 2011/11/15 982 Influenza A virus (A/swine/North Carolina/A01048807/2011(H1N2)) yes
JQ398784 Swine 4 H3N2 USA 2011/10/20 1701 Influenza A virus (A/swine/North Carolina/A01202766/2011(H3N2)) yes
JQ398766 Swine 6 H3N2 USA 2011/10/20 1410 Influenza A virus (A/swine/North Carolina/A01202766/2011(H3N2)) yes
JQ398755 Swine 7 H3N2 USA 2011/10/20 982 Influenza A virus (A/swine/North Carolina/A01202766/2011(H3N2)) yes
JQ398750 Swine 7 H1N2 USA 2011/03/02 982 Influenza A virus (A/swine/Oklahoma/A01049501/2011(H1N2))

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New sequences with H1N1pdm09 M gene
JQ398749 Swine 7 H1N2 USA 2011/01/19 982 Influenza A virus (A/swine/Mississippi/A01049443/2011(H1N2)) yes
JQ398752 Swine 7 H1N2 USA 2011/10/10 979 Influenza A virus (A/swine/Iowa/A01202693/2011(H1N2))
JQ398753 Swine 7 H1N2 USA 2011/11/02 982 Influenza A virus (A/swine/Iowa/A01202794/2011(H1N2)) yes
JQ398754 Swine 7 H1N2 USA 2011/11/02 982 Influenza A virus (A/swine/Iowa/A01202795/2011(H1N2)) yes

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As seen in the serotypes of the above isolates, the USDA has failed to find additional matches to the human H3N2v cases in 2011. The number of matches in swine remains at 2 (in NY and IA), which includes collections as recent as November, 2011.

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EPI353681 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2564.3 0.000000e+00 1402/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI317022 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1399/1407 (99%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI353689 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI351665 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI353690 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 6 (NA) 2540.3 0.000000e+00 1398/1410 (99%)
EPI353691 A/swine/North Carolina/A01048779/2011 (A/H3N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI353688 A/swine/Iowa/A01202770/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2538.4 0.000000e+00 1386/1392 (99%)
EPI347609 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI347606 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI347603 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI346439 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI346423 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI338585 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI346431 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1394/1410 (98%)
EPI353687 A/swine/North Carolina/A01202766/2011 (A/H3N2) segment 6 (NA) 2516.3 0.000000e+00 1395/1411 (98%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2516.3 0.000000e+00 1394/1410 (98%)
EPI338566 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 6 (NA) 2516.3 0.000000e+00 1394/1410 (98%)
EPI338565 A/swine/Illinois/A01049968/2011 (A/H1N2) segment 6 (NA) 2516.3 0.000000e+00 1394/1410 (98%)
EPI338564 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 6 (NA) 2516.3 0.000000e+00 1394/1410 (98%)
EPI340983 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI339170 A/Maine/06/2011 (A/H3N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI335612 A/Pennsylvania/09/2011 (A/H3N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%)
EPI346500 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1378/1392 (98%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1388/1410 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1386/1411 (98%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2464.6 0.000000e+00 1384/1409 (98%)
EPI342703 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI342695 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2455.3 0.000000e+00 1361/1377 (98%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2449.8 0.000000e+00 1383/1411 (98%)
EPI351674 A/swine/Iowa/A01202709/2011 (A/H3N2) segment 6 (NA) 2444.2 0.000000e+00 1381/1410 (97%)

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EPI353686 A/swine/Iowa/A01202693/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2505.2 0.000000e+00 1392/1410 (98%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2499.6 0.000000e+00 1391/1410 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1389/1410 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1389/1410 (98%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1388/1410 (98%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1388/1410 (98%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1388/1410 (98%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1387/1409 (98%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI351674 A/swine/Iowa/A01202709/2011 (A/H3N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI312699 A/swine/Minnesota/239106/2010 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1386/1411 (98%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2455.3 0.000000e+00 1384/1411 (98%)
EPI220901 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 6 (NA) 2444.2 0.000000e+00 1381/1410 (97%)
EPI219362 A/swine/Kansas/015252/2009 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI219370 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 6 (NA) 2433.2 0.000000e+00 1379/1410 (97%)
EPI315843 A/swine/South Dakota/5/2011 (A/H1N2) segment 6 (NA) 2427.6 0.000000e+00 1378/1410 (97%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2422.1 0.000000e+00 1377/1410 (97%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2422.1 0.000000e+00 1377/1410 (97%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI315846 A/swine/South Dakota/6/2011 (A/H1N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2411.0 0.000000e+00 1376/1411 (97%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2411.0 0.000000e+00 1376/1411 (97%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI338576 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1374/1410 (97%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2405.5 0.000000e+00 1376/1412 (97%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2405.5 0.000000e+00 1376/1412 (97%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1373/1410 (97%)
EPI353681 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1374/1411 (97%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1374/1411 (97%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1374/1411 (97%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1375/1412 (97%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2396.2 0.000000e+00 1372/1410 (97%)
EPI351665 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 6 (NA) 2394.4 0.000000e+00 1372/1410 (97%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2394.4 0.000000e+00 1370/1407 (97%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2394.4 0.000000e+00 1372/1410 (97%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2394.4 0.000000e+00 1372/1410 (97%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2394.4 0.000000e+00 1372/1410 (97%)
EPI353691 A/swine/North Carolina/A01048779/2011 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI353689 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1373/1412 (97%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI317022 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI292291 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1372/1411 (97%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2383.3 0.000000e+00 1370/1410 (97%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2383.3 0.000000e+00 1370/1410 (97%)
EPI353690 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1369/1410 (97%)
EPI353688 A/swine/Iowa/A01202770/2011 (A/H1N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI353687 A/swine/North Carolina/A01202766/2011 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI347606 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI347603 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI346439 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI346423 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1357/1392 (97%)
EPI346431 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1368/1410 (97%)
EPI347609 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2364.8 0.000000e+00 1352/1388 (97%)
EPI340983 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2363.0 0.000000e+00 1345/1378 (97%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2359.3 0.000000e+00 1351/1388 (97%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2355.6 0.000000e+00 1365/1410 (96%)

_________________
www.twitter.com/hniman

EPI353689 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI353690 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 6 (NA) 2595.7 0.000000e+00 1408/1410 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI347609 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI353688 A/swine/Iowa/A01202770/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2564.3 0.000000e+00 1402/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1399/1407 (99%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI335612 A/Pennsylvania/09/2011 (A/H3N2) segment 6 (NA) 2553.2 0.000000e+00 1386/1388 (99%)
EPI353681 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI346500 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1388/1392 (99%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1401/1411 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI317022 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI351665 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1400/1411 (99%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI353691 A/swine/North Carolina/A01048779/2011 (A/H3N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338566 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338565 A/swine/Illinois/A01049968/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338564 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1399/1411 (99%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2538.4 0.000000e+00 1386/1392 (99%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI347606 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI347603 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI346439 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI346423 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI346431 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1394/1410 (98%)
EPI353687 A/swine/North Carolina/A01202766/2011 (A/H3N2) segment 6 (NA) 2516.3 0.000000e+00 1395/1411 (98%)
EPI338585 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 6 (NA) 2510.7 0.000000e+00 1393/1410 (98%)
EPI340983 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI339170 A/Maine/06/2011 (A/H3N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI342703 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI342695 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2455.3 0.000000e+00 1361/1377 (98%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2455.3 0.000000e+00 1383/1410 (98%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2455.3 0.000000e+00 1383/1410 (98%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2455.3 0.000000e+00 1384/1411 (98%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2453.5 0.000000e+00 1382/1409 (98%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2449.8 0.000000e+00 1382/1410 (98%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2449.8 0.000000e+00 1382/1410 (98%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2438.7 0.000000e+00 1381/1411 (97%)
EPI351674 A/swine/Iowa/A01202709/2011 (A/H3N2) segment 6 (NA) 2433.2 0.000000e+00 1379/1410 (97%)

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EPI353707 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 4 (HA) 3136.7 0.000000e+00 1698/1698 (100%)
EPI353708 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 4 (HA) 3127.5 0.000000e+00 1696/1698 (99%)
EPI338554 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 4 (HA) 3114.6 0.000000e+00 1694/1698 (99%)
EPI353706 A/swine/Iowa/A01202770/2011 (A/H1N2) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI347610 A/Minnesota/19/2011 (A/H1N2) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI346501 A/Minnesota/19/2011 (A/H1N2) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI338538 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI338533 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI338417 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI338416 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI338415 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI338414 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI353694 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI338534 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI338419 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI324858 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI281213 A/swine/Minnesota/03043/2010 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI314784 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI347196 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 4 (HA) 3081.3 0.000000e+00 1686/1695 (99%)
EPI338537 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 4 (HA) 3075.8 0.000000e+00 1687/1698 (99%)
EPI338555 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1686/1698 (99%)
EPI327060 A/swine/Minnesota/5470-1/2010 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1685/1696 (99%)
EPI338550 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1686/1698 (99%)
EPI298484 A/swine/South Dakota/2/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1678/1686 (99%)
EPI327059 A/swine/Minnesota/6470-1/2010 (A/H1N2) segment 4 (HA) 3066.6 0.000000e+00 1684/1696 (99%)
EPI338423 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1685/1698 (99%)
EPI298487 A/swine/South Dakota/3/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1677/1686 (99%)
EPI338539 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1684/1698 (99%)
EPI307829 A/swine/South Dakota/4/2010 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1676/1686 (99%)
EPI327057 A/swine/Minnesota/7501-1/2010 (A/H1N2) segment 4 (HA) 3055.5 0.000000e+00 1682/1696 (99%)
EPI338535 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 4 (HA) 3053.6 0.000000e+00 1684/1699 (99%)
EPI338189 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1682/1698 (99%)
EPI220875 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220859 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220843 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220827 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220811 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220803 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220787 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220779 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI220771 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1681/1698 (98%)
EPI316999 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1680/1698 (98%)
EPI220835 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1680/1698 (98%)
EPI220819 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1680/1698 (98%)
EPI220795 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1680/1698 (98%)
EPI338536 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1679/1698 (98%)
EPI220891 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1679/1698 (98%)
EPI220883 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1679/1698 (98%)
EPI220867 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1679/1698 (98%)
EPI338551 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1677/1698 (98%)
EPI220932 A/swine/Texas/050625/2008 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1677/1698 (98%)
EPI220924 A/swine/Texas/050593/2008 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1677/1698 (98%)
EPI220899 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1677/1698 (98%)
EPI220851 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1678/1699 (98%)
EPI338552 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1676/1698 (98%)
EPI327056 A/swine/Oklahoma/1701-1/2010 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1674/1696 (98%)
EPI292299 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI220907 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1675/1698 (98%)
EPI269541 A/swine/Minnesota/03023/2010 (A/H1N2) segment 4 (HA) 2998.2 0.000000e+00 1673/1698 (98%)
EPI312697 A/swine/Minnesota/239106/2010 (A/H1N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1700 (98%)
EPI327052 A/swine/Minnesota/1251-1/2010 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1672/1698 (98%)
EPI327081 A/swine/Minnesota/0913-1/2009 (A/H1N2) segment 4 (HA) 2977.9 0.000000e+00 1668/1696 (98%)
EPI315845 A/swine/South Dakota/6/2011 (A/H1N2) segment 4 (HA) 2976.1 0.000000e+00 1670/1699 (98%)
EPI327083 A/swine/Minnesota/2992-9/2009 (A/H1N2) segment 4 (HA) 2961.3 0.000000e+00 1666/1697 (98%)
EPI327061 A/swine/Texas/9950-1/2010 (A/H1N2) segment 4 (HA) 2933.6 0.000000e+00 1661/1697 (97%)
EPI337473 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 4 (HA) 2917.0 0.000000e+00 1657/1696 (97%)
EPI338544 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 4 (HA) 2915.1 0.000000e+00 1658/1698 (97%)
EPI353704 A/swine/Iowa/A01202693/2011 (A/H1N2) segment 4 (HA) 2904.1 0.000000e+00 1656/1698 (97%)
EPI327054 A/swine/Minnesota/8721-1/2010 (A/H1N2) segment 4 (HA) 2900.4 0.000000e+00 1654/1696 (97%)
EPI338422 A/swine/Nebraska/A01049648/2011 (A/H1N2) segment 4 (HA) 2898.5 0.000000e+00 1655/1698 (97%)
EPI292290 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 4 (HA) 2893.0 0.000000e+00 1655/1699 (97%)
EPI337505 A/swine/Minnesota/02324/2008 (A/H1N2) segment 4 (HA) 2883.7 0.000000e+00 1652/1697 (97%)
EPI259432 A/swine/Iowa/02998/2010 (A/H1N2) segment 4 (HA) 2883.7 0.000000e+00 1651/1696 (97%)
EPI338424 A/swine/Iowa/A01049643/2011 (A/H1N2) segment 4 (HA) 2881.9 0.000000e+00 1652/1698 (97%)
EPI338429 A/swine/Oklahoma/A01049501/2011 (A/H1N2) segment 4 (HA) 2876.4 0.000000e+00 1651/1698 (97%)
EPI234590 A/swine/SD/31813/2009 (A/H1N2) segment 4 (HA) 2872.7 0.000000e+00 1650/1697 (97%)
EPI338430 A/swine/Oklahoma/A01049500/2011 (A/H1N2) segment 4 (HA) 2870.8 0.000000e+00 1650/1698 (97%)
EPI315842 A/swine/South Dakota/5/2011 (A/H1N2) segment 4 (HA) 2863.4 0.000000e+00 1611/1641 (98%)
EPI281272 A/swine/Iowa/02039/2008 (A/H1N2) segment 4 (HA) 2859.7 0.000000e+00 1648/1697 (97%)
EPI79673 A/New York/209/2003 (A/H1N2 seasonal) segment 4 (HA) 2798.8 0.000000e+00 1637/1698 (96%)
EPI139109 A/Denmark/50/2003 (A/H1N2 seasonal) segment 4 (HA) 2793.3 0.000000e+00 1636/1698 (96%)
EPI139108 A/Denmark/12/2003 (A/H1N2 seasonal) segment 4 (HA) 2793.3 0.000000e+00 1636/1698 (96%)
EPI83134 A/New York/226/2003 (A/H1N2 seasonal) segment 4 (HA) 2793.3 0.000000e+00 1636/1698 (96%)
EPI80395 A/New York/294/2003 (A/H1N2 seasonal) segment 4 (HA) 2793.3 0.000000e+00 1636/1698 (96%)
EPI47903 A/New York/C1/2003 (A/H1N2 seasonal) segment 4 (HA) 2793.3 0.000000e+00 1636/1698 (96%)
EPI139107 A/Denmark/56/2003 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI91257 A/New York/490/2003 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI84939 A/New York/400/2003 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI84008 A/New York/217/2002 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI80338 A/New York/231/2003 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI31437 A/New York/229/2003 (A/H1N2 seasonal) segment 4 (HA) 2787.7 0.000000e+00 1635/1698 (96%)
EPI179354 A/swine/IL/07003243/2007 (A/H1N2) segment 4 (HA) 2782.2 0.000000e+00 1636/1700 (96%)
EPI92321 A/New York/211/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1634/1698 (96%)
EPI91276 A/New York/492/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1634/1698 (96%)
EPI90554 A/New York/219/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1634/1698 (96%)
EPI84730 A/New York/482/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1634/1698 (96%)
EPI79692 A/New York/300/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1635/1699 (96%)
EPI46051 A/Michigan/2/2003 (A/H1N2 seasonal) segment 4 (HA) 2782.2 0.000000e+00 1634/1698 (96%)
EPI92036 A/New York/225/2003 (A/H1N2 seasonal) segment 4 (HA) 2776.6 0.000000e+00 1633/1698 (96%)
EPI184492 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1700 (96%)

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Commentary

http://www.recombinomics.com/News/02091 ... lures.html

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