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H3N2v Swine Sequences from Vietnam

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niman

Post subject: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 10:44 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

Recent reports of novel H3 cases in Vietnam has increased interest in H3N2v sequences in Vietnam. There are currently six sets of H3N2v sequences from Vietnam (Bihn Doung).

Recently releasedH3N2v sequences from Hong Kong and China have an H1N1pdm09 M gene and the H3 is closley related to the swine sequences in Vietnam.

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 10:49 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

A/swine/Binh Duong/03_14/2010 EPI_ISL_93250 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02
A/swine/Binh Duong/03_13/2010 EPI_ISL_93249 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02
A/swine/Binh Duong/03_10/2010 EPI_ISL_93248 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02
A/swine/Binh Duong/03_09/2010 EPI_ISL_93247 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02
A/swine/Binh Duong/03_08/2010 EPI_ISL_93246 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02
A/swine/Binh Duong/03_06/2010 EPI_ISL_93245 H3N2 2280 2274 2151 1701 1515 1410 982 838 --- --- , EpiFluDB 2010-02

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:01 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

HA matches

EPI324314 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI324311 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI324309 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI324313 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI324312 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI324310 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI79882 A/New York/365/2004 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1656/1702 (97%)
EPI161195 A/Hong Kong/CUHK5567/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI78989 A/New York/391/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI78856 A/New York/359/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI96219 A/New York/73/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI93651 A/Canterbury/101/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI91333 A/New York/368/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI90668 A/New York/258/2005 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI80566 A/New York/363/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI79540 A/New York/207/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI325589 A/reassortant/IgYRP16.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317867 A/reassortant/CDC2005712034(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317860 A/reassortant/IgYRP16(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317851 A/reassortant/IgYRP2(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI228963 A/California/07/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI139157 A/Denmark/261/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI139151 A/Denmark/264/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95573 A/Canterbury/310/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95516 A/Canterbury/305/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95478 A/Whanganui/69/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95000 A/Canterbury/109/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93898 A/Canterbury/209/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93860 A/Canterbury/207/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93841 A/Canterbury/206/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93822 A/Canterbury/205/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93803 A/Canterbury/202/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93689 A/Canterbury/103/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93670 A/Canterbury/102/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93632 A/Canterbury/100/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93613 A/Canterbury/24/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93594 A/Canterbury/23/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93556 A/Canterbury/20/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93499 A/Canterbury/17/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93480 A/Canterbury/16/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93442 A/Canterbury/11/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93423 A/Whanganui/417/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93404 A/Whanganui/386/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93347 A/Bay of Plenty/332/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93328 A/Bay of Plenty/279/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93309 A/Whanganui/129/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93290 A/Whanganui/128/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90611 A/New York/206/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90592 A/New York/191/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90573 A/New York/355/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI83970 A/New York/389/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI83005 A/Christchurch/90/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82967 A/Christchurch/14/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82925 A/Christchurch/339/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82849 A/New York/232/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82811 A/New York/200/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82792 A/New York/68/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI80281 A/New York/190/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI80224 A/New York/358/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79901 A/New York/367/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79331 A/New York/369/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79274 A/New York/356/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79046 A/New York/244/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI78951 A/New York/386/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI57251 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI57213 A/Queensland/45/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55503 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55484 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55465 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55199 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI49922 A/Queensland/43/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI45240 A/Western Australia/63/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI44290 A/Wellington/34/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40562 A/Waikato/68/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40524 A/Waikato/56/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40505 A/Waikato/51/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40486 A/Wellington/59/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40467 A/Waikato/3/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39550 A/Waikato/43/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39493 A/Waikato/26/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39379 A/Waikato/12/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI38645 A/Wellington/35/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI37619 A/Waikato/40/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI37543 A/Wellington/22/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI31076 A/Whanganui/127/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI318560 A/South Carolina/NHRC0002/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317878 A/reassortant/IgYRP13.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317875 A/reassortant/IgYRP10.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317874 A/reassortant/IgYRP2.c2(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317873 A/reassortant/IgYRP2.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI185032 A/Canterbury/200/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI161219 A/Hong Kong/CUHK7047/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI161175 A/Hong Kong/CUHK52390/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI159408 A/New York/55/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI139270 A/Denmark/67/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI139236 A/Denmark/195/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI106568 A/Norway/807/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI99816 A/Taiwan/31001/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI95592 A/Canterbury/312/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI95554 A/Canterbury/309/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:04 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

NA matches

EPI324326 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324325 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324324 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324323 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324321 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI324322 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI139334 A/Denmark/201/2005 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1364/1410 (96%)
EPI177696 A/Hong Kong/HKU1/2004 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96547 A/Canterbury/270/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96528 A/Canterbury/266/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96414 A/Canterbury/251/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96395 A/Canterbury/248/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96357 A/Canterbury/230/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI96053 A/Canterbury/269/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI95939 A/Canterbury/235/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI95863 A/Canterbury/186/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI95252 A/Canterbury/212/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI95157 A/Canterbury/67/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI54786 A/Queensland/53/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI54615 A/South Australia/42/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI49086 A/Queensland/55/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI45416 A/Western Australia/78/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI45378 A/Western Australia/74/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI45359 A/Western Australia/73/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI45340 A/Western Australia/70/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI45302 A/Western Australia/66/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI40928 A/Waikato/9/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI40871 A/Otago/2/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI29011 A/Canterbury/124/2005 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI2156 A/Fukuoka/F23/2006 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI315022 A/Hiroshima/37/2005 (A/H3N2) segment 6 (NA) 2340.8 0.000000e+00 1362/1410 (96%)
EPI228462 A/Wellington/1/2004 (A/H3N2) segment 6 (NA) 2340.8 0.000000e+00 1362/1410 (96%)
EPI333203 A/NYMC X-157(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI320720 A/New Jersey/NHRC0001/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI320319 A/Australia/NHRC0010/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI319042 A/Singapore/NHRC0003/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI319034 A/Singapore/NHRC0004/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI319026 A/Singapore/NHRC0006/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318938 A/Australia/NHRC0006/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318930 A/Australia/NHRC0007/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318922 A/Australia/NHRC0008/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318914 A/Australia/NHRC0009/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318906 A/Australia/NHRC0011/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318890 A/Australia/NHRC0013/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318882 A/Australia/NHRC0014/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318874 A/Australia/NHRC0015/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI318810 A/Singapore/NHRC0008/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318802 A/Singapore/NHRC0009/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318786 A/Singapore/NHRC0012/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318778 A/California/NHRC0002/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318770 A/California/NHRC0004/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318730 A/California/NHRC0003/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318706 A/Singapore/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI315023 A/Niigata/494/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI315021 A/Ehime/7/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI241929 A/NYMC X-157B(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI241921 A/NYMC X-157A(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI229706 A/Wellington/1/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI228968 A/Wellington/01/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI228957 A/New York/40e/2004 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI176825 A/Hong Kong/HKU6/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI168361 A/Sendai-H/F005/2006 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI161512 A/Hong Kong/CUHK83422/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI159410 A/New York/55/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139435 A/Denmark/67/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139408 A/Denmark/191/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139392 A/Denmark/84/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139372 A/Denmark/202/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139358 A/Denmark/116/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI124551 A/California/7/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI96452 A/Canterbury/255/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI96433 A/Canterbury/253/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI96034 A/Canterbury/260/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI95882 A/Canterbury/204/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI95825 A/Canterbury/64/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1360/1407 (96%)
EPI64225 A/Auckland/617/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI63092 A/Auckland/616/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI61693 A/Waikato/6/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI46369 A/Waikato/18/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI45321 A/Western Australia/68/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI44447 A/Waikato/10/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI44428 A/Waikato/15/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI44409 A/Wellington/6/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI44390 A/Wellington/5/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI40985 A/Waikato/12/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI40852 A/Waikato/16/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI40719 A/Wellington/1/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI38859 A/Canterbury/232/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI37586 A/Waikato/21/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI31461 A/Canterbury/250/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI2558 A/Hanoi/HN30188/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI2074 A/Nagasaki/N24/2006 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI2052 A/Niigata/04F759/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI1992 A/Fukuoka/F488/2005 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI174936 A/Babol/36/2005 (A/H3N2) segment 6 (NA) 2335.3 0.000000e+00 1360/1408 (96%)
EPI44371 A/Wellington/4/2005 (A/H3N2) segment 6 (NA) 2335.3 0.000000e+00 1360/1408 (96%)
EPI341208 A/Hong Kong/HKU118/2004 (A/H3N2) segment 6 (NA) 2333.4 0.000000e+00 1359/1407 (96%)
EPI318962 A/Australia/NHRC0003/2005 (A/H3N2) segment 6 (NA) 2333.4 0.000000e+00 1361/1410 (96%)
EPI318898 A/Australia/NHRC0012/2005 (A/H3N2) segment 6 (NA) 2333.4 0.000000e+00 1362/1411 (96%)
EPI318714 A/Singapore/NHRC0005/2003 (A/H3N2) segment 6 (NA) 2333.4 0.000000e+00 1361/1410 (96%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:44 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

H3 update

EPI324314 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI324311 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI324309 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI324313 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI324312 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI324310 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI353654 A/swine/Guangxi/NS2783/2010 (A/H3N2) segment 4 (HA) 2965.0 0.000000e+00 1669/1701 (98%)
EPI353656 A/swine/Hong Kong/2503/2011 (A/H3N2) segment 4 (HA) 2948.4 0.000000e+00 1666/1701 (97%)
EPI353655 A/swine/Hong Kong/NS2439/2011 (A/H3N2) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI79882 A/New York/365/2004 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1656/1702 (97%)
EPI161195 A/Hong Kong/CUHK5567/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI78989 A/New York/391/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI78856 A/New York/359/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI96219 A/New York/73/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI93651 A/Canterbury/101/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI91333 A/New York/368/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI90668 A/New York/258/2005 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI80566 A/New York/363/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI79540 A/New York/207/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI325589 A/reassortant/IgYRP16.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317867 A/reassortant/CDC2005712034(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317860 A/reassortant/IgYRP16(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI317851 A/reassortant/IgYRP2(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI228963 A/California/07/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI139157 A/Denmark/261/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI139151 A/Denmark/264/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95573 A/Canterbury/310/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95516 A/Canterbury/305/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95478 A/Whanganui/69/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI95000 A/Canterbury/109/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93898 A/Canterbury/209/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93860 A/Canterbury/207/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93841 A/Canterbury/206/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93822 A/Canterbury/205/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93803 A/Canterbury/202/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93689 A/Canterbury/103/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93670 A/Canterbury/102/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93632 A/Canterbury/100/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93613 A/Canterbury/24/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93594 A/Canterbury/23/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93556 A/Canterbury/20/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93499 A/Canterbury/17/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93480 A/Canterbury/16/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93442 A/Canterbury/11/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93423 A/Whanganui/417/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93404 A/Whanganui/386/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93347 A/Bay of Plenty/332/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93328 A/Bay of Plenty/279/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93309 A/Whanganui/129/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI93290 A/Whanganui/128/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90611 A/New York/206/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90592 A/New York/191/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI90573 A/New York/355/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI83970 A/New York/389/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI83005 A/Christchurch/90/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82967 A/Christchurch/14/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82925 A/Christchurch/339/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82849 A/New York/232/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82811 A/New York/200/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI82792 A/New York/68/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI80281 A/New York/190/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI80224 A/New York/358/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79901 A/New York/367/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79331 A/New York/369/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79274 A/New York/356/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI79046 A/New York/244/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI78951 A/New York/386/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI57251 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI57213 A/Queensland/45/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55503 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55484 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55465 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI55199 A/New York/918/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI49922 A/Queensland/43/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI45240 A/Western Australia/63/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI44290 A/Wellington/34/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40562 A/Waikato/68/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40524 A/Waikato/56/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40505 A/Waikato/51/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40486 A/Wellington/59/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI40467 A/Waikato/3/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39550 A/Waikato/43/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39493 A/Waikato/26/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI39379 A/Waikato/12/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI38645 A/Wellington/35/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI37619 A/Waikato/40/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI37543 A/Wellington/22/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI31076 A/Whanganui/127/2004 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI318560 A/South Carolina/NHRC0002/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317878 A/reassortant/IgYRP13.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317875 A/reassortant/IgYRP10.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317874 A/reassortant/IgYRP2.c2(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI317873 A/reassortant/IgYRP2.c1(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI185032 A/Canterbury/200/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI161219 A/Hong Kong/CUHK7047/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI161175 A/Hong Kong/CUHK52390/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI159408 A/New York/55/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI139270 A/Denmark/67/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI139236 A/Denmark/195/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI106568 A/Norway/807/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:47 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

PB2

EPI324296 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI324295 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI324294 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI324293 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI324292 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI324291 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI327290 A/swine/Texas/4199-2/1998 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI185083 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI185081 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI185079 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI185076 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI177593 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 1 (PB2) 3871.7 0.000000e+00 2216/2276 (97%)
EPI311388 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI311372 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI9467 A/Swine/Indiana/P12439/00 (A/H1N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI9463 A/Swine/Minnesota/55551/00 (A/H1N2) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI273351 A/swine/Heilongjiang/10/2007 (A/H3N2) segment 1 (PB2) 3832.9 0.000000e+00 2211/2280 (96%)
EPI164403 A/swine/Korea/JNS06/2004 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI164137 A/swine/Korea/CY05/2007 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI9461 A/Swine/North Carolina/93523/01 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI7616 A/Swine/Minnesota/593/99 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%)
EPI7599 A/Swine/Iowa/569/99 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%)
EPI7582 A/Swine/Iowa/533/99 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%)
EPI7565 A/Swine/Nebraska/209/98 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%)
EPI164139 A/swine/Korea/CY09/2007 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI164136 A/swine/Korea/CY04/2007 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI335072 A/swine/Minnesota/1192/2001 (A/H1N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI177641 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI9457 A/Swine/Ohio/891/01 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI311428 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 1 (PB2) 3805.2 0.000000e+00 2204/2276 (96%)
EPI177633 A/swine/Hong Kong/915/2004 (A/H1N2) segment 1 (PB2) 3805.2 0.000000e+00 2204/2276 (96%)
EPI337496 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%)
EPI335064 A/swine/North Carolina/47834/2000 (A/H1N1) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%)
EPI9459 A/Swine/North Carolina/98225/01 (A/H1N2) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%)
EPI235936 A/equine/North Carolina/152429/2002 (A/H3N8) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI177601 A/swine/Hong Kong/78/2003 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2202/2277 (96%)
EPI311500 A/swine/Hong Kong/729/2005 (A/H1N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%)
EPI17860 A/duck/NC/91347/01 (A/H1N2) segment 1 (PB2) 3784.9 0.000000e+00 2205/2282 (96%)
EPI9469 A/Swine/Illinois/100085A/01 (A/H1N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%)
EPI9465 A/Swine/Iowa/930/01 (A/H1N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%)
EPI7410 A/Swine/Indiana/9K035/99 (A/H1N2) segment 1 (PB2) 3784.9 0.000000e+00 2205/2282 (96%)
EPI9471 A/Swine/Illinois/100084/01 (A/H1N2) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%)
EPI292059 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 1 (PB2) 3768.3 0.000000e+00 2201/2281 (96%)
EPI120026 A/swine/Guangxi/13/2006 (A/H1N2) segment 1 (PB2) 3762.7 0.000000e+00 2200/2281 (96%)
EPI235268 A/swine/North Carolina/2003 (A/H3N2) segment 1 (PB2) 3757.2 0.000000e+00 2199/2281 (96%)
EPI164135 A/swine/Korea/CAS09/2006 (A/H3N2) segment 1 (PB2) 3751.7 0.000000e+00 2198/2281 (96%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3751.7 0.000000e+00 2199/2282 (96%)
EPI15282 A/Swine/Korea/CY02/02 (A/H1N2) segment 1 (PB2) 3751.7 0.000000e+00 2198/2281 (96%)
EPI337362 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%)
EPI335056 A/swine/Minnesota/6998/2003 (A/H1N1) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%)
EPI292053 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%)
EPI164122 A/swine/Korea/CAS08/2005 (A/H1N1) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%)
EPI335048 A/swine/Minnesota/5763/2003 (A/H1N2) segment 1 (PB2) 3740.6 0.000000e+00 2198/2283 (96%)
EPI164140 A/swine/Korea/CY10/2007 (A/H3N2) segment 1 (PB2) 3740.6 0.000000e+00 2198/2283 (96%)
EPI153512 A/swine/Ohio/75004/04 (A/H1N1) segment 1 (PB2) 3738.7 0.000000e+00 2195/2280 (96%)
EPI292061 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 1 (PB2) 3735.0 0.000000e+00 2196/2282 (96%)
EPI255759 A/swine/MN/48683/2002 (A/H1N1) segment 1 (PB2) 3735.0 0.000000e+00 2195/2281 (96%)
EPI164138 A/swine/Korea/CY07/2007 (A/H3N2) segment 1 (PB2) 3735.0 0.000000e+00 2197/2283 (96%)
EPI164134 A/swine/Korea/CAS07/2005 (A/H3N2) segment 1 (PB2) 3735.0 0.000000e+00 2195/2281 (96%)
EPI164133 A/swine/Korea/CAN04/2005 (A/H3N2) segment 1 (PB2) 3735.0 0.000000e+00 2195/2281 (96%)
EPI292060 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 1 (PB2) 3729.5 0.000000e+00 2195/2282 (96%)
EPI292057 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 1 (PB2) 3729.5 0.000000e+00 2194/2281 (96%)
EPI292051 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 1 (PB2) 3729.5 0.000000e+00 2194/2281 (96%)
EPI164121 A/swine/Korea/CAN01/2004 (A/H1N1) segment 1 (PB2) 3729.5 0.000000e+00 2194/2281 (96%)
EPI335024 A/swine/North Carolina/18161/2002 (A/H1N1) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%)
EPI292056 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3724.0 0.000000e+00 2194/2282 (96%)
EPI166060 A/swine/Shanghai/1/2007 (A/H1N2) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3724.0 0.000000e+00 2194/2282 (96%)
EPI292062 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 1 (PB2) 3718.4 0.000000e+00 2195/2284 (96%)
EPI292050 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%)
EPI177617 A/swine/Hong Kong/1110/2006 (A/H1N2) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3712.9 0.000000e+00 2192/2282 (96%)
EPI292049 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 1 (PB2) 3709.2 0.000000e+00 2190/2281 (96%)
EPI292063 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 1 (PB2) 3707.3 0.000000e+00 2192/2283 (96%)
EPI255733 A/swine/Hong Kong/NS1892/2009 (A/H1N2) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%)
EPI255725 A/swine/Hong Kong/NS1890/2009 (A/H1N2) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%)
EPI255717 A/swine/Hong Kong/NS1889/2009 (A/H1N2) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3707.3 0.000000e+00 2191/2282 (96%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%)
EPI353602 A/swine/Hebei/10/2006 (A/H1N2) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%)
EPI339157 A/swine/Guangdong/1/2010 (A/H1N2) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3701.8 0.000000e+00 2190/2282 (95%)
EPI292054 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 1 (PB2) 3701.8 0.000000e+00 2190/2282 (95%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%)
EPI337400 A/swine/Illinois/02064/2008 (A/H1N1) segment 1 (PB2) 3696.3 0.000000e+00 2188/2281 (95%)
EPI255637 A/swine/Hong Kong/2314/2009 (A/H1N2) segment 1 (PB2) 3696.3 0.000000e+00 2181/2271 (96%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%)
EPI292052 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 1 (PB2) 3687.0 0.000000e+00 2186/2281 (95%)
EPI344646 A/mallard/Alberta/72/1993 (A/H3N8) segment 1 (PB2) 3685.2 0.000000e+00 2185/2280 (95%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3685.2 0.000000e+00 2187/2282 (95%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:49 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

EPI324302 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI324301 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI324298 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI324299 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 2 (PB1) 4196.7 0.000000e+00 2273/2274 (99%)
EPI324300 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%)
EPI324297 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%)
EPI8425 A/Wisconsin/10/98 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI185077 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%)
EPI184458 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%)
EPI327289 A/swine/Texas/4199-2/1998 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI184470 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI184464 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI164117 A/swine/Korea/CY05/2007 (A/H3N2) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%)
EPI164116 A/swine/Korea/CY04/2007 (A/H3N2) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%)
EPI7605 A/Swine/Minnesota/593/99 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI7588 A/Swine/Iowa/569/99 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI7571 A/Swine/Iowa/533/99 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI7554 A/Swine/Nebraska/209/98 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI7408 A/Swine/Indiana/9K035/99 (A/H1N2) segment 2 (PB1) 3836.6 0.000000e+00 2209/2275 (97%)
EPI9455 A/Swine/Illinois/100084/01 (A/H1N2) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%)
EPI9453 A/Swine/Illinois/100085A/01 (A/H1N2) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%)
EPI17862 A/duck/NC/91347/01 (A/H1N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2274 (96%)
EPI9449 A/Swine/Iowa/930/01 (A/H1N2) segment 2 (PB1) 3812.6 0.000000e+00 2205/2275 (96%)
EPI9441 A/Swine/Ohio/891/01 (A/H1N2) segment 2 (PB1) 3812.6 0.000000e+00 2205/2275 (96%)
EPI164114 A/swine/Korea/CAS07/2005 (A/H3N2) segment 2 (PB1) 3808.9 0.000000e+00 2203/2274 (96%)
EPI335071 A/swine/Minnesota/1192/2001 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2203/2274 (96%)
EPI164113 A/swine/Korea/CAN04/2005 (A/H3N2) segment 2 (PB1) 3807.1 0.000000e+00 2204/2275 (96%)
EPI98700 A/swine/Minnesota/00395/2004 (A/H3N1) segment 2 (PB1) 3807.1 0.000000e+00 2203/2274 (96%)
EPI9451 A/Swine/Indiana/P12439/00 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2203/2274 (96%)
EPI164115 A/swine/Korea/CAS09/2006 (A/H3N2) segment 2 (PB1) 3803.4 0.000000e+00 2202/2274 (96%)
EPI15280 A/Swine/Korea/CY02/02 (A/H1N2) segment 2 (PB1) 3801.5 0.000000e+00 2204/2276 (96%)
EPI280416 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 2 (PB1) 3799.7 0.000000e+00 2200/2271 (96%)
EPI177588 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 2 (PB1) 3797.8 0.000000e+00 2188/2254 (97%)
EPI335047 A/swine/Minnesota/5763/2003 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI311373 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 2 (PB1) 3794.1 0.000000e+00 2188/2255 (97%)
EPI177628 A/swine/Hong Kong/915/2004 (A/H1N2) segment 2 (PB1) 3792.3 0.000000e+00 2193/2263 (96%)
EPI164101 A/swine/Korea/CAN01/2004 (A/H1N1) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%)
EPI9447 A/Swine/Minnesota/55551/00 (A/H1N2) segment 2 (PB1) 3790.4 0.000000e+00 2202/2276 (96%)
EPI292037 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 2 (PB1) 3788.6 0.000000e+00 2199/2272 (96%)
EPI292035 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 2 (PB1) 3788.6 0.000000e+00 2199/2272 (96%)
EPI337399 A/swine/Illinois/02064/2008 (A/H1N1) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI292043 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 2 (PB1) 3783.1 0.000000e+00 2197/2271 (96%)
EPI292041 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 2 (PB1) 3783.1 0.000000e+00 2197/2271 (96%)
EPI335063 A/swine/North Carolina/47834/2000 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI335055 A/swine/Minnesota/6998/2003 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%)
EPI311501 A/swine/Hong Kong/729/2005 (A/H1N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%)
EPI273352 A/swine/Heilongjiang/10/2007 (A/H3N2) segment 2 (PB1) 3777.5 0.000000e+00 2198/2275 (96%)
EPI337339 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3773.8 0.000000e+00 2197/2274 (96%)
EPI292048 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 2 (PB1) 3773.8 0.000000e+00 2196/2272 (96%)
EPI9443 A/Swine/North Carolina/98225/01 (A/H1N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%)
EPI311389 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 2 (PB1) 3772.0 0.000000e+00 2184/2255 (96%)
EPI292047 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 2 (PB1) 3772.0 0.000000e+00 2197/2273 (96%)
EPI177636 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%)
EPI131060 A/Miyagi/29/95 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2196/2274 (96%)
EPI311429 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 2 (PB1) 3766.4 0.000000e+00 2189/2264 (96%)
EPI292046 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 2 (PB1) 3766.4 0.000000e+00 2195/2272 (96%)
EPI176083 A/Siena/3/1995 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2195/2274 (96%)
EPI131058 A/Shiga/20/95 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2195/2274 (96%)
EPI287515 A/swine/Guangdong/1222/2006 (A/H1N2) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%)
EPI177612 A/swine/Hong Kong/1110/2006 (A/H1N2) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%)
EPI164406 A/swine/Korea/JNS06/2004 (A/H3N2) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%)
EPI164102 A/swine/Korea/CAS08/2005 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2196/2276 (96%)
EPI34650 A/New York/636/1996 (A/H3N2) segment 2 (PB1) 3757.2 0.000000e+00 2194/2274 (96%)
EPI9445 A/Swine/North Carolina/93523/01 (A/H1N2) segment 2 (PB1) 3757.2 0.000000e+00 2194/2274 (96%)
EPI34631 A/New York/635/1996 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI32952 A/New York/628/1995 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI32876 A/New York/618/1995 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI32857 A/New York/613/1996 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI32838 A/New York/612/1995 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI32819 A/New York/611/1995 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI337431 A/swine/Indiana/00427/2004 (A/H1N2) segment 2 (PB1) 3746.1 0.000000e+00 2193/2275 (96%)
EPI34669 A/New York/641/1996 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2192/2274 (96%)
EPI34593 A/New York/624/1996 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2192/2274 (96%)
EPI33199 A/New York/623/1995 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2192/2274 (96%)
EPI235935 A/equine/North Carolina/152429/2002 (A/H3N8) segment 2 (PB1) 3740.6 0.000000e+00 2192/2275 (96%)
EPI226728 A/Iowa/CEID23/2005 (A/H1N1) segment 2 (PB1) 3740.6 0.000000e+00 2192/2275 (96%)
EPI36436 A/New York/639/1995 (A/H3N2) segment 2 (PB1) 3740.6 0.000000e+00 2191/2274 (96%)
EPI32990 A/New York/634/1995 (A/H3N2) segment 2 (PB1) 3740.6 0.000000e+00 2191/2274 (96%)
EPI292045 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 2 (PB1) 3738.7 0.000000e+00 2190/2272 (96%)
EPI35505 A/New York/652/1996 (A/H3N2) segment 2 (PB1) 3738.7 0.000000e+00 2190/2273 (96%)
EPI335023 A/swine/North Carolina/18161/2002 (A/H1N1) segment 2 (PB1) 3735.0 0.000000e+00 2191/2275 (96%)
EPI164120 A/swine/Korea/CY10/2007 (A/H3N2) segment 2 (PB1) 3735.0 0.000000e+00 2192/2276 (96%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3735.0 0.000000e+00 2193/2277 (96%)
EPI292038 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 2 (PB1) 3733.2 0.000000e+00 2188/2271 (96%)
EPI153519 A/swine/Ohio/75004/04 (A/H1N1) segment 2 (PB1) 3729.5 0.000000e+00 2189/2274 (96%)
EPI353601 A/swine/Hebei/10/2006 (A/H1N2) segment 2 (PB1) 3724.0 0.000000e+00 2188/2274 (96%)
EPI235269 A/swine/North Carolina/2003 (A/H3N2) segment 2 (PB1) 3724.0 0.000000e+00 2190/2276 (96%)
EPI164118 A/swine/Korea/CY07/2007 (A/H3N2) segment 2 (PB1) 3724.0 0.000000e+00 2190/2276 (96%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3718.4 0.000000e+00 2190/2277 (96%)
EPI37728 A/New York/777/1993 (A/H3N2) segment 2 (PB1) 3718.4 0.000000e+00 2187/2274 (96%)
EPI292040 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 2 (PB1) 3716.6 0.000000e+00 2186/2272 (96%)
EPI292036 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 2 (PB1) 3716.6 0.000000e+00 2186/2272 (96%)
EPI297776 A/Netherlands/179/1993 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2186/2274 (96%)
EPI242112 A/X-119(Puerto Rico/8/1934-Harbin/15/1992) (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2186/2274 (96%)
EPI120024 A/swine/Guangxi/13/2006 (A/H1N2) segment 2 (PB1) 3712.9 0.000000e+00 2187/2275 (96%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2188/2276 (96%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2188/2276 (96%)
EPI46416 A/New York/800/1993 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2186/2274 (96%)
EPI41032 A/New York/796/1993 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2186/2274 (96%)
EPI40115 A/New York/799/1993 (A/H3N2) segment 2 (PB1) 3712.9 0.000000e+00 2186/2274 (96%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:51 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

PA

EPI324308 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324307 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324306 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324305 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324303 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324304 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%)
EPI327288 A/swine/Texas/4199-2/1998 (A/H3N2) segment 3 (PA) 3513.4 0.000000e+00 2070/2153 (96%)
EPI164097 A/swine/Korea/CY05/2007 (A/H3N2) segment 3 (PA) 3513.4 0.000000e+00 2069/2152 (96%)
EPI164096 A/swine/Korea/CY04/2007 (A/H3N2) segment 3 (PA) 3513.4 0.000000e+00 2069/2152 (96%)
EPI164099 A/swine/Korea/CY09/2007 (A/H3N2) segment 3 (PA) 3502.4 0.000000e+00 2067/2152 (96%)
EPI185084 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 3 (PA) 3495.0 0.000000e+00 2065/2151 (96%)
EPI185080 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 3 (PA) 3495.0 0.000000e+00 2065/2151 (96%)
EPI185078 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 3 (PA) 3495.0 0.000000e+00 2065/2151 (96%)
EPI335070 A/swine/Minnesota/1192/2001 (A/H1N2) segment 3 (PA) 3491.3 0.000000e+00 2065/2152 (95%)
EPI185082 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 3 (PA) 3489.4 0.000000e+00 2064/2151 (95%)
EPI311430 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 3 (PA) 3469.1 0.000000e+00 2061/2152 (95%)
EPI7614 A/Swine/Minnesota/593/99 (A/H3N2) segment 3 (PA) 3463.6 0.000000e+00 2060/2152 (95%)
EPI7597 A/Swine/Iowa/569/99 (A/H3N2) segment 3 (PA) 3463.6 0.000000e+00 2060/2152 (95%)
EPI7580 A/Swine/Iowa/533/99 (A/H3N2) segment 3 (PA) 3463.6 0.000000e+00 2060/2152 (95%)
EPI7563 A/Swine/Nebraska/209/98 (A/H3N2) segment 3 (PA) 3463.6 0.000000e+00 2060/2152 (95%)
EPI311390 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 3 (PA) 3458.0 0.000000e+00 2060/2153 (95%)
EPI15278 A/Swine/Korea/CY02/02 (A/H1N2) segment 3 (PA) 3458.0 0.000000e+00 2059/2152 (95%)
EPI177632 A/swine/Hong Kong/915/2004 (A/H1N2) segment 3 (PA) 3452.5 0.000000e+00 2060/2154 (95%)
EPI9439 A/Swine/Illinois/100084/01 (A/H1N2) segment 3 (PA) 3447.0 0.000000e+00 2057/2152 (95%)
EPI292034 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 3 (PA) 3435.9 0.000000e+00 2059/2156 (95%)
EPI177640 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 3 (PA) 3435.9 0.000000e+00 2055/2152 (95%)
EPI9431 A/Swine/Minnesota/55551/00 (A/H1N2) segment 3 (PA) 3435.9 0.000000e+00 2056/2153 (95%)
EPI177592 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 3 (PA) 3430.3 0.000000e+00 2054/2152 (95%)
EPI9435 A/Swine/Indiana/P12439/00 (A/H1N2) segment 3 (PA) 3430.3 0.000000e+00 2054/2152 (95%)
EPI311502 A/swine/Hong Kong/729/2005 (A/H1N2) segment 3 (PA) 3426.7 0.000000e+00 2052/2150 (95%)
EPI337361 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 3 (PA) 3424.8 0.000000e+00 2057/2156 (95%)
EPI311374 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 3 (PA) 3424.8 0.000000e+00 2053/2152 (95%)
EPI235270 A/swine/North Carolina/2003 (A/H3N2) segment 3 (PA) 3424.8 0.000000e+00 2054/2153 (95%)
EPI17864 A/duck/NC/91347/01 (A/H1N2) segment 3 (PA) 3424.8 0.000000e+00 2053/2152 (95%)
EPI292027 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 3 (PA) 3423.0 0.000000e+00 2054/2153 (95%)
EPI335062 A/swine/North Carolina/47834/2000 (A/H1N1) segment 3 (PA) 3419.3 0.000000e+00 2053/2153 (95%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3419.3 0.000000e+00 2054/2154 (95%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3419.3 0.000000e+00 2054/2154 (95%)
EPI9427 A/Swine/North Carolina/98225/01 (A/H1N2) segment 3 (PA) 3419.3 0.000000e+00 2053/2153 (95%)
EPI292030 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 3 (PA) 3413.7 0.000000e+00 2053/2154 (95%)
EPI9429 A/Swine/North Carolina/93523/01 (A/H1N2) segment 3 (PA) 3413.7 0.000000e+00 2051/2152 (95%)
EPI353600 A/swine/Hebei/10/2006 (A/H1N2) segment 3 (PA) 3410.0 0.000000e+00 2050/2152 (95%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3408.2 0.000000e+00 2052/2154 (95%)
EPI335054 A/swine/Minnesota/6998/2003 (A/H1N1) segment 3 (PA) 3408.2 0.000000e+00 2054/2156 (95%)
EPI292033 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 3 (PA) 3408.2 0.000000e+00 2053/2155 (95%)
EPI292021 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 3 (PA) 3408.2 0.000000e+00 2055/2157 (95%)
EPI255760 A/swine/MN/48683/2002 (A/H1N1) segment 3 (PA) 3408.2 0.000000e+00 2054/2156 (95%)
EPI235934 A/equine/North Carolina/152429/2002 (A/H3N8) segment 3 (PA) 3408.2 0.000000e+00 2050/2152 (95%)
EPI164405 A/swine/Korea/JNS06/2004 (A/H3N2) segment 3 (PA) 3408.2 0.000000e+00 2051/2153 (95%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3408.2 0.000000e+00 2053/2155 (95%)
EPI120022 A/swine/Guangxi/13/2006 (A/H1N2) segment 3 (PA) 3408.2 0.000000e+00 2045/2144 (95%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3408.2 0.000000e+00 2052/2154 (95%)
EPI9437 A/Swine/Illinois/100085A/01 (A/H1N2) segment 3 (PA) 3406.3 0.000000e+00 2049/2152 (95%)
EPI323199 A/swine/Minnesota/5947/2007 (A/H3N2) segment 3 (PA) 3402.6 0.000000e+00 2051/2154 (95%)
EPI164082 A/swine/Korea/CAS08/2005 (A/H1N1) segment 3 (PA) 3402.6 0.000000e+00 2053/2156 (95%)
EPI164081 A/swine/Korea/CAN01/2004 (A/H1N1) segment 3 (PA) 3402.6 0.000000e+00 2054/2157 (95%)
EPI7406 A/Swine/Indiana/9K035/99 (A/H1N2) segment 3 (PA) 3402.6 0.000000e+00 2049/2152 (95%)
EPI337398 A/swine/Illinois/02064/2008 (A/H1N1) segment 3 (PA) 3397.1 0.000000e+00 2051/2155 (95%)
EPI292028 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 3 (PA) 3397.1 0.000000e+00 2053/2157 (95%)
EPI103169 A/swine/Manitoba/12707/2005 (A/H3N2) segment 3 (PA) 3397.1 0.000000e+00 2050/2154 (95%)
EPI339159 A/swine/Guangdong/1/2010 (A/H1N2) segment 3 (PA) 3395.3 0.000000e+00 2043/2145 (95%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3391.6 0.000000e+00 2050/2155 (95%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3391.6 0.000000e+00 2049/2154 (95%)
EPI292022 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 3 (PA) 3391.6 0.000000e+00 2051/2156 (95%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3386.0 0.000000e+00 2048/2154 (95%)
EPI335022 A/swine/North Carolina/18161/2002 (A/H1N1) segment 3 (PA) 3386.0 0.000000e+00 2046/2152 (95%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3386.0 0.000000e+00 2048/2154 (95%)
EPI281275 A/swine/Iowa/02096/2008 (A/H1N1) segment 3 (PA) 3386.0 0.000000e+00 2047/2152 (95%)
EPI226729 A/Iowa/CEID23/2005 (A/H1N1) segment 3 (PA) 3386.0 0.000000e+00 2050/2156 (95%)
EPI222651 A/swine/Minnesota/1145/2007 (A/H3N2) segment 3 (PA) 3386.0 0.000000e+00 2048/2154 (95%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3386.0 0.000000e+00 2048/2154 (95%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3380.5 0.000000e+00 2048/2155 (95%)
EPI292025 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 3 (PA) 3380.5 0.000000e+00 2045/2152 (95%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3380.5 0.000000e+00 2047/2154 (95%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3380.5 0.000000e+00 2047/2154 (95%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3380.5 0.000000e+00 2047/2154 (95%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3380.5 0.000000e+00 2047/2154 (95%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3380.5 0.000000e+00 2048/2155 (95%)
EPI337550 A/swine/Minnesota/00484/2005 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2046/2154 (94%)
EPI323281 A/swine/Minnesota/7931/2007 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2046/2154 (94%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2047/2155 (94%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2047/2155 (94%)
EPI292020 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 3 (PA) 3374.9 0.000000e+00 2048/2156 (94%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2046/2154 (94%)
EPI177600 A/swine/Hong Kong/78/2003 (A/H1N2) segment 3 (PA) 3374.9 0.000000e+00 2044/2152 (94%)
EPI166065 A/swine/Shanghai/1/2007 (A/H1N2) segment 3 (PA) 3374.9 0.000000e+00 2045/2153 (94%)
EPI164095 A/swine/Korea/CAS09/2006 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2046/2154 (94%)
EPI164092 A/swine/Korea/CAS05/2004 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2044/2152 (94%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3374.9 0.000000e+00 2046/2154 (94%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3369.4 0.000000e+00 2045/2154 (94%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3369.4 0.000000e+00 2046/2155 (94%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3369.4 0.000000e+00 2046/2155 (94%)
EPI337494 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 3 (PA) 3369.4 0.000000e+00 2043/2152 (94%)
EPI337390 A/swine/Nebraska/00722/2005 (A/H0) segment 3 (PA) 3369.4 0.000000e+00 2045/2154 (94%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3369.4 0.000000e+00 2046/2155 (94%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3369.4 0.000000e+00 2046/2155 (94%)
EPI292032 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 3 (PA) 3369.4 0.000000e+00 2043/2152 (94%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3369.4 0.000000e+00 2045/2154 (94%)
EPI222673 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 3 (PA) 3369.4 0.000000e+00 2046/2155 (94%)
EPI177616 A/swine/Hong Kong/1110/2006 (A/H1N2) segment 3 (PA) 3369.4 0.000000e+00 2045/2154 (94%)

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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:53 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

NP

EPI324320 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%)
EPI324318 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%)
EPI324317 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%)
EPI324316 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%)
EPI324315 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%)
EPI324319 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 5 (NP) 2758.2 0.000000e+00 1495/1496 (99%)
EPI327286 A/swine/Texas/4199-2/1998 (A/H3N2) segment 5 (NP) 2569.8 0.000000e+00 1461/1496 (97%)
EPI184472 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 5 (NP) 2569.8 0.000000e+00 1461/1496 (97%)
EPI184466 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 5 (NP) 2564.3 0.000000e+00 1460/1496 (97%)
EPI184460 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 5 (NP) 2564.3 0.000000e+00 1460/1496 (97%)
EPI184454 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 5 (NP) 2564.3 0.000000e+00 1460/1496 (97%)
EPI164057 A/swine/Korea/CY05/2007 (A/H3N2) segment 5 (NP) 2553.2 0.000000e+00 1458/1496 (97%)
EPI164056 A/swine/Korea/CY04/2007 (A/H3N2) segment 5 (NP) 2553.2 0.000000e+00 1458/1496 (97%)
EPI164059 A/swine/Korea/CY09/2007 (A/H3N2) segment 5 (NP) 2547.7 0.000000e+00 1457/1496 (97%)
EPI7575 A/Swine/Iowa/533/99 (A/H3N2) segment 5 (NP) 2547.7 0.000000e+00 1457/1496 (97%)
EPI177590 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 5 (NP) 2531.0 0.000000e+00 1455/1497 (97%)
EPI8417 A/Wisconsin/10/98 (A/H1N1) segment 5 (NP) 2531.0 0.000000e+00 1454/1495 (97%)
EPI7592 A/Swine/Iowa/569/99 (A/H3N2) segment 5 (NP) 2531.0 0.000000e+00 1454/1496 (97%)
EPI7609 A/Swine/Minnesota/593/99 (A/H3N2) segment 5 (NP) 2520.0 0.000000e+00 1452/1496 (97%)
EPI335060 A/swine/North Carolina/47834/2000 (A/H1N1) segment 5 (NP) 2514.4 0.000000e+00 1451/1496 (96%)
EPI166063 A/swine/Shanghai/1/2007 (A/H1N2) segment 5 (NP) 2514.4 0.000000e+00 1451/1496 (96%)
EPI9397 A/Swine/Illinois/100085A/01 (A/H1N2) segment 5 (NP) 2514.4 0.000000e+00 1451/1496 (96%)
EPI9389 A/Swine/North Carolina/93523/01 (A/H1N2) segment 5 (NP) 2514.4 0.000000e+00 1451/1496 (96%)
EPI9385 A/Swine/Ohio/891/01 (A/H1N2) segment 5 (NP) 2514.4 0.000000e+00 1439/1478 (97%)
EPI335020 A/swine/North Carolina/18161/2002 (A/H1N1) segment 5 (NP) 2510.7 0.000000e+00 1449/1494 (96%)
EPI311392 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 5 (NP) 2508.9 0.000000e+00 1451/1497 (96%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 2503.3 0.000000e+00 1449/1496 (96%)
EPI311432 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 5 (NP) 2503.3 0.000000e+00 1450/1497 (96%)
EPI164055 A/swine/Korea/CAS09/2006 (A/H3N2) segment 5 (NP) 2503.3 0.000000e+00 1449/1496 (96%)
EPI164053 A/swine/Korea/CAN04/2005 (A/H3N2) segment 5 (NP) 2503.3 0.000000e+00 1449/1496 (96%)
EPI164052 A/swine/Korea/CAS05/2004 (A/H3N2) segment 5 (NP) 2503.3 0.000000e+00 1449/1496 (96%)
EPI9395 A/Swine/Indiana/P12439/00 (A/H1N2) segment 5 (NP) 2503.3 0.000000e+00 1437/1478 (97%)
EPI335068 A/swine/Minnesota/1192/2001 (A/H1N2) segment 5 (NP) 2497.8 0.000000e+00 1448/1496 (96%)
EPI311376 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 5 (NP) 2497.8 0.000000e+00 1450/1498 (96%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 2497.8 0.000000e+00 1448/1496 (96%)
EPI177598 A/swine/Hong Kong/78/2003 (A/H1N2) segment 5 (NP) 2497.8 0.000000e+00 1449/1497 (96%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 2497.8 0.000000e+00 1448/1496 (96%)
EPI9391 A/Swine/Minnesota/55551/00 (A/H1N2) segment 5 (NP) 2497.8 0.000000e+00 1448/1496 (96%)
EPI7401 A/Swine/Indiana/9K035/99 (A/H1N2) segment 5 (NP) 2495.9 0.000000e+00 1440/1484 (97%)
EPI337492 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 5 (NP) 2494.1 0.000000e+00 1446/1494 (96%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 2492.3 0.000000e+00 1447/1496 (96%)
EPI321803 A/swine/Hubei/04/2009 (A/H1N2) segment 5 (NP) 2492.3 0.000000e+00 1448/1497 (96%)
EPI164404 A/swine/Korea/JNS06/2004 (A/H3N2) segment 5 (NP) 2492.3 0.000000e+00 1447/1496 (96%)
EPI164054 A/swine/Korea/CAS07/2005 (A/H3N2) segment 5 (NP) 2492.3 0.000000e+00 1447/1496 (96%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 2492.3 0.000000e+00 1447/1496 (96%)
EPI337500 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 5 (NP) 2486.7 0.000000e+00 1446/1496 (96%)
EPI321811 A/swine/Hubei/05/2009 (A/H1N2) segment 5 (NP) 2481.2 0.000000e+00 1446/1497 (96%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 2481.2 0.000000e+00 1445/1496 (96%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 2481.2 0.000000e+00 1445/1496 (96%)
EPI163612 A/swine/Guangxi/17/2005 (A/H1N2) segment 5 (NP) 2481.2 0.000000e+00 1446/1497 (96%)
EPI9399 A/Swine/Illinois/100084/01 (A/H1N2) segment 5 (NP) 2481.2 0.000000e+00 1433/1478 (96%)
EPI9387 A/Swine/North Carolina/98225/01 (A/H1N2) segment 5 (NP) 2481.2 0.000000e+00 1444/1497 (96%)
EPI164060 A/swine/Korea/CY10/2007 (A/H3N2) segment 5 (NP) 2475.6 0.000000e+00 1444/1496 (96%)
EPI164058 A/swine/Korea/CY07/2007 (A/H3N2) segment 5 (NP) 2475.6 0.000000e+00 1444/1496 (96%)
EPI120020 A/swine/Guangxi/13/2006 (A/H1N2) segment 5 (NP) 2473.8 0.000000e+00 1444/1496 (96%)
EPI339160 A/swine/Guangdong/1/2010 (A/H1N2) segment 5 (NP) 2470.1 0.000000e+00 1444/1497 (96%)
EPI337428 A/swine/Indiana/00427/2004 (A/H1N2) segment 5 (NP) 2470.1 0.000000e+00 1443/1496 (96%)
EPI337352 A/swine/Minnesota/01146/2006 (A/H3N2) segment 5 (NP) 2470.1 0.000000e+00 1443/1496 (96%)
EPI311504 A/swine/Hong Kong/729/2005 (A/H1N2) segment 5 (NP) 2470.1 0.000000e+00 1445/1498 (96%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 2470.1 0.000000e+00 1443/1496 (96%)
EPI291999 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 5 (NP) 2464.6 0.000000e+00 1430/1478 (96%)
EPI177630 A/swine/Hong Kong/915/2004 (A/H1N2) segment 5 (NP) 2464.6 0.000000e+00 1443/1497 (96%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 2459.0 0.000000e+00 1441/1496 (96%)
EPI337336 A/swine/Kentucky/SG1118/2003 (A/H0) segment 5 (NP) 2459.0 0.000000e+00 1441/1496 (96%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 2459.0 0.000000e+00 1441/1496 (96%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 2459.0 0.000000e+00 1429/1478 (96%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 2459.0 0.000000e+00 1429/1478 (96%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 2459.0 0.000000e+00 1441/1496 (96%)
EPI337388 A/swine/Nebraska/00722/2005 (A/H0) segment 5 (NP) 2453.5 0.000000e+00 1440/1496 (96%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 2453.5 0.000000e+00 1428/1478 (96%)
EPI232417 A/swine/Hainan/1/2005 (A/H1N2) segment 5 (NP) 2453.5 0.000000e+00 1442/1498 (96%)
EPI177654 A/swine/Hong Kong/294/2009 (A/H1N2) segment 5 (NP) 2453.5 0.000000e+00 1441/1497 (96%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 2447.9 0.000000e+00 1427/1478 (96%)
EPI158918 A/turkey/IA/21089-3/1992 (A/H1N1) segment 5 (NP) 2447.9 0.000000e+00 1439/1496 (96%)
EPI126568 A/swine/Missouri/2124514/2006 (A/H2N3) segment 5 (NP) 2447.9 0.000000e+00 1439/1496 (96%)
EPI77680 A/swine/California/T9001707/1991 (A/H1N1) segment 5 (NP) 2447.9 0.000000e+00 1439/1496 (96%)
EPI17875 A/duck/NC/91347/01 (A/H1N2) segment 5 (NP) 2446.1 0.000000e+00 1433/1487 (96%)
EPI353598 A/swine/Hebei/10/2006 (A/H1N2) segment 5 (NP) 2442.4 0.000000e+00 1439/1497 (96%)
EPI337524 A/swine/Minnesota/001581/2007 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI337476 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 5 (NP) 2442.4 0.000000e+00 1439/1497 (96%)
EPI332938 A/swine/Iowa/3421/1990 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1426/1478 (96%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1426/1478 (96%)
EPI280413 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1426/1478 (96%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI226731 A/Iowa/CEID23/2005 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1426/1478 (96%)
EPI177638 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 5 (NP) 2442.4 0.000000e+00 1439/1497 (96%)
EPI165700 A/swine/Memphis/1/1990 (A/H1N1) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI103174 A/swine/Manitoba/12707/2005 (A/H3N2) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI98714 A/swine/MI/PU243/04 (A/H3N1) segment 5 (NP) 2442.4 0.000000e+00 1438/1496 (96%)
EPI98730 A/swine/IN/PU542/04 (A/H3N1) segment 5 (NP) 2438.7 0.000000e+00 1437/1496 (96%)
EPI337444 A/swine/Minnesota/00611/2005 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI337365 A/swine/Minnesota/00709/2005 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI323275 A/swine/Minnesota/761/2007 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1438/1497 (96%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 2436.9 0.000000e+00 1425/1478 (96%)
EPI103210 A/turkey/Ontario/31232/2005 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI103192 A/swine/Ontario/33853/2005 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI103120 A/Ontario/RV1273/2005 (A/H3N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI15274 A/Swine/Korea/CY02/02 (A/H1N2) segment 5 (NP) 2436.9 0.000000e+00 1437/1496 (96%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 2431.3 0.000000e+00 1437/1497 (95%)

_________________
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niman

Post subject: Re: H3N2v Swine Sequences from Vietnam

Posted: Thu Feb 09, 2012 11:54 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA

MP

EPI324332 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI324331 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI324330 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI324329 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI324328 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI324327 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI8414 A/Wisconsin/10/98 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI17871 A/duck/NC/91347/01 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%)
EPI177591 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%)
EPI177639 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 7 (MP) 1676.0 0.000000e+00 957/982 (97%)
EPI164019 A/swine/Korea/CY09/2007 (A/H3N2) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%)
EPI164017 A/swine/Korea/CY05/2007 (A/H3N2) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%)
EPI164016 A/swine/Korea/CY04/2007 (A/H3N2) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%)
EPI164013 A/swine/Korea/CAN04/2005 (A/H3N2) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%)
EPI311378 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 7 (MP) 1665.0 0.000000e+00 955/982 (97%)
EPI235932 A/equine/North Carolina/152429/2002 (A/H3N8) segment 7 (MP) 1665.0 0.000000e+00 955/982 (97%)
EPI166066 A/swine/Shanghai/1/2007 (A/H1N2) segment 7 (MP) 1665.0 0.000000e+00 956/983 (97%)
EPI164015 A/swine/Korea/CAS09/2006 (A/H3N2) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%)
EPI164014 A/swine/Korea/CAS07/2005 (A/H3N2) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%)
EPI311394 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 7 (MP) 1659.4 0.000000e+00 954/982 (97%)
EPI158913 A/turkey/IA/21089-3/1992 (A/H1N1) segment 7 (MP) 1659.4 0.000000e+00 955/983 (97%)
EPI120017 A/swine/Guangxi/13/2006 (A/H1N2) segment 7 (MP) 1659.4 0.000000e+00 954/982 (97%)
EPI311506 A/swine/Hong Kong/729/2005 (A/H1N2) segment 7 (MP) 1653.9 0.000000e+00 953/982 (97%)
EPI311434 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 7 (MP) 1653.9 0.000000e+00 953/982 (97%)
EPI291669 A/Indiana/01/1994 (A/H1N1) segment 7 (MP) 1653.9 0.000000e+00 954/983 (97%)
EPI177615 A/swine/Hong Kong/1110/2006 (A/H1N2) segment 7 (MP) 1653.9 0.000000e+00 953/982 (97%)
EPI165698 A/swine/Memphis/1/1990 (A/H1N1) segment 7 (MP) 1653.9 0.000000e+00 954/983 (97%)
EPI98734 A/swine/IN/PU542/04 (A/H3N1) segment 7 (MP) 1653.9 0.000000e+00 953/982 (97%)
EPI77675 A/swine/California/T9001707/1991 (A/H1N1) segment 7 (MP) 1653.9 0.000000e+00 954/983 (97%)
EPI337357 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 7 (MP) 1648.3 0.000000e+00 952/982 (96%)
EPI321805 A/swine/Hubei/04/2009 (A/H1N2) segment 7 (MP) 1648.3 0.000000e+00 953/983 (96%)
EPI291693 A/Nebraska/01/1992 (A/H1N1) segment 7 (MP) 1648.3 0.000000e+00 953/983 (96%)
EPI232418 A/swine/Hainan/1/2005 (A/H1N2) segment 7 (MP) 1648.3 0.000000e+00 952/982 (96%)
EPI163613 A/swine/Guangxi/17/2005 (A/H1N2) segment 7 (MP) 1648.3 0.000000e+00 952/982 (96%)
EPI335042 A/swine/Minnesota/5763/2003 (A/H1N2) segment 7 (MP) 1642.8 0.000000e+00 951/982 (96%)
EPI327284 A/swine/Texas/4199-2/1998 (A/H3N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI321813 A/swine/Hubei/05/2009 (A/H1N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI291964 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 7 (MP) 1642.8 0.000000e+00 951/982 (96%)
EPI291677 A/Indiana/05/1995 (A/H1N1) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI255764 A/swine/MN/48683/2002 (A/H1N1) segment 7 (MP) 1642.8 0.000000e+00 951/982 (96%)
EPI184474 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI184468 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI184462 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI184456 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 7 (MP) 1642.8 0.000000e+00 952/983 (96%)
EPI98696 A/swine/Minnesota/00395/2004 (A/H3N1) segment 7 (MP) 1640.9 0.000000e+00 950/981 (96%)
EPI339162 A/swine/Guangdong/1/2010 (A/H1N2) segment 7 (MP) 1637.3 0.000000e+00 951/983 (96%)
EPI337546 A/swine/Minnesota/00484/2005 (A/H3N2) segment 7 (MP) 1637.3 0.000000e+00 950/982 (96%)
EPI335050 A/swine/Minnesota/6998/2003 (A/H1N1) segment 7 (MP) 1637.3 0.000000e+00 950/982 (96%)
EPI291973 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 7 (MP) 1637.3 0.000000e+00 944/973 (97%)
EPI68593 A/Ohio/3559/1988 (A/H1N1 seasonal) segment 7 (MP) 1637.3 0.000000e+00 951/983 (96%)
EPI42454 A/turkey/Minnesota/12537/1989 (A/H1N1) segment 7 (MP) 1637.3 0.000000e+00 951/983 (96%)
EPI14876 A/SW/MN/17138/01 (A/H1N2) segment 7 (MP) 1637.3 0.000000e+00 926/946 (97%)
EPI7573 A/Swine/Iowa/533/99 (A/H3N2) segment 7 (MP) 1637.3 0.000000e+00 949/980 (96%)
EPI25402 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 7 (MP) 1635.4 0.000000e+00 949/981 (96%)
EPI25399 A/turkey/North Carolina/12344/03 (A/H3N2) segment 7 (MP) 1635.4 0.000000e+00 949/981 (96%)
EPI353594 A/swine/Hebei/10/2006 (A/H1N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI337458 A/swine//Ohio/02026/2008 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI337442 A/swine/Minnesota/00611/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI337342 A/swine/Iowa/01700/2007 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI323267 A/swine/Minnesota/66853/2006 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI314332 A/turkey/BC/1529-3/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI291970 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 943/973 (96%)
EPI291820 A/Michigan/09/2007 (A/H1N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI291785 A/Illinois/09/2007 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI291685 A/Minnesota/18/1995 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI289655 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI239971 A/Swine/Indiana/1726/1988 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI229373 A/turkey/OH/313053/2004 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI178969 A/Swine/Indiana/1726/1988 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI158500 A/chicken/NY/21665-73/1998 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI155077 A/swine/Quebec/4001/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI130949 A/WI/4755/1994 (A/H1N1 seasonal) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI105689 A/swine/Korea/S15/2006 (A/H1N2) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI103196 A/swine/Ontario/33853/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI103178 A/swine/Manitoba/12707/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI103160 A/swine/British Columbia/28103/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI103142 A/swine/Alberta/14722/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI103124 A/Ontario/RV1273/2005 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI101391 A/turkey/Ohio/313053/04 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 949/982 (96%)
EPI63957 A/swine/Iowa/31483/1988 (A/H1N1) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI7607 A/Swine/Minnesota/593/99 (A/H3N2) segment 7 (MP) 1631.7 0.000000e+00 950/983 (96%)
EPI7556 A/Swine/Nebraska/209/98 (A/H3N2) segment 7 (MP) 1628.0 0.000000e+00 942/972 (96%)
EPI337530 A/swine/Minnesota/001332/2006 (A/H3N2) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI337514 A/swine/Minnesota/001444/2007 (A/H3N2) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI337394 A/swine/Illinois/02064/2008 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI337385 A/swine/Nebraska/00722/2005 (A/H0) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI337363 A/swine/Minnesota/00709/2005 (A/H3N2) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI337333 A/swine/Kentucky/SG1118/2003 (A/H0) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324130 A/swine/QC/4113/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324127 A/swine/QC/4112/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324080 A/swine/QC/1805-5/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324077 A/swine/QC/1805-4/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324074 A/swine/QC/1805-3/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324071 A/swine/QC/1805-2/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324065 A/swine/QC/1792-2/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI324062 A/swine/QC/1792-1/2009 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI323259 A/swine/Minnesota/578/2007 (A/H3N2) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI323258 A/swine/Minnesota/1300/2007 (A/H3N2) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)
EPI291966 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 942/973 (96%)
EPI291904 A/Ohio/02/2007 (A/H1N1) segment 7 (MP) 1626.2 0.000000e+00 948/982 (96%)

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