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New H3N2v Pandemic Vaccine Target - A/Indiana/10/2011

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niman

Post subject: New H3N2v Pandemic Vaccine Target - A/Indiana/10/2011

Posted: Mon Jan 23, 2012 4:01 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

CDC has selected a new H3N2v vaccine target.

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target

Posted: Mon Jan 23, 2012 4:02 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

5:3 A/reassortant NYMC X-2013 (A/PR8/34 x A/Indiana/10/2011 (HA, NA and PB2) H3N2v)

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target

Posted: Mon Jan 23, 2012 4:02 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

A/Indiana/10/2011 X-213 is new target

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target

Posted: Mon Jan 23, 2012 4:14 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

Top 100 HA matches

EPI348782 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI347607 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI347604 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI346440 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI346432 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI346424 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1692/1701 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI346493 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1689/1701 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1688/1701 (99%)
EPI344405 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3053.6 0.000000e+00 1685/1701 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3053.6 0.000000e+00 1685/1701 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 3049.9 0.000000e+00 1684/1701 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 3001.9 0.000000e+00 1659/1676 (98%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2928.1 0.000000e+00 1607/1618 (99%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1657/1703 (97%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1654/1702 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1651/1703 (96%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1650/1705 (96%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1703 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2826.5 0.000000e+00 1646/1703 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1646/1704 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1646/1704 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1646/1704 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2802.5 0.000000e+00 1634/1691 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1642/1704 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2795.1 0.000000e+00 1639/1702 (96%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1641/1704 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1639/1703 (96%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2785.9 0.000000e+00 1633/1693 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2784.0 0.000000e+00 1632/1692 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1638/1703 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1638/1703 (96%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1639/1704 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1639/1704 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1638/1704 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1636/1703 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1630/1694 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1636/1704 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2761.9 0.000000e+00 1636/1704 (96%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1633/1703 (95%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1633/1704 (95%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1634/1705 (95%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1633/1704 (95%)
EPI347613 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI317007 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1632/1705 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1632/1705 (95%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2734.2 0.000000e+00 1628/1701 (95%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1630/1704 (95%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1631/1705 (95%)
EPI316991 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1627/1701 (95%)
EPI316990 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1627/1701 (95%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1630/1704 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1623/1695 (95%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1704 (95%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1704 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1627/1703 (95%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1630/1706 (95%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1627/1704 (95%)

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target

Posted: Mon Jan 23, 2012 4:20 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

Top 100 NA matches

EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2575.3 0.000000e+00 1404/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2568.0 0.000000e+00 1403/1410 (99%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1401/1407 (99%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI317022 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1388/1392 (99%)
EPI347609 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI340983 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2540.3 0.000000e+00 1377/1378 (99%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%)
EPI347606 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI347603 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI346439 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI346423 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2532.9 0.000000e+00 1397/1410 (99%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI346431 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2529.2 0.000000e+00 1396/1410 (99%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2527.3 0.000000e+00 1396/1410 (99%)
EPI338566 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 6 (NA) 2527.3 0.000000e+00 1396/1410 (99%)
EPI338565 A/swine/Illinois/A01049968/2011 (A/H1N2) segment 6 (NA) 2527.3 0.000000e+00 1396/1410 (99%)
EPI338564 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 6 (NA) 2527.3 0.000000e+00 1396/1410 (99%)
EPI338585 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 6 (NA) 2521.8 0.000000e+00 1395/1410 (98%)
EPI339170 A/Maine/06/2011 (A/H3N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI335612 A/Pennsylvania/09/2011 (A/H3N2) segment 6 (NA) 2508.9 0.000000e+00 1378/1388 (99%)
EPI346500 A/Minnesota/19/2011 (A/H1N2) segment 6 (NA) 2505.2 0.000000e+00 1380/1392 (99%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1388/1410 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI342703 A/Iowa/09/2011 (A/H3N2) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2471.9 0.000000e+00 1386/1410 (98%)
EPI342695 A/Iowa/08/2011 (A/H3N2) segment 6 (NA) 2466.4 0.000000e+00 1363/1377 (98%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1386/1411 (98%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2466.4 0.000000e+00 1385/1410 (98%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2464.6 0.000000e+00 1384/1409 (98%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2460.9 0.000000e+00 1384/1410 (98%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2449.8 0.000000e+00 1383/1411 (98%)
EPI342687 A/Iowa/07/2011 (A/H3N2) segment 6 (NA) 2444.2 0.000000e+00 1349/1362 (99%)
EPI220901 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 6 (NA) 2427.6 0.000000e+00 1378/1410 (97%)
EPI219362 A/swine/Kansas/015252/2009 (A/H3N2) segment 6 (NA) 2422.1 0.000000e+00 1377/1410 (97%)
EPI312699 A/swine/Minnesota/239106/2010 (A/H1N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI219370 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1376/1410 (97%)
EPI315843 A/swine/South Dakota/5/2011 (A/H1N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI315846 A/swine/South Dakota/6/2011 (A/H1N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI338576 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 6 (NA) 2368.5 0.000000e+00 1367/1410 (96%)
EPI292291 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 6 (NA) 2361.1 0.000000e+00 1367/1411 (96%)

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target - A/Indiana/10/2011

Posted: Mon Jan 23, 2012 4:27 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

Top 100 MP matches

EPI347600 A/Indiana/10/2011 X-213 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI333230 A/X-133(X-31B-Shenzhen/227/1995) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI333199 A/NYMC X-157(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI328751 A/South Carolina/02/2010 NYMC X-205A (A/H1N1 pdm09) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI328745 A/South Carolina/02/2010 NYMC X-205A (A/H1N1 pdm09) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI327202 A/Brisbane/11/2010 X-197 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI326814 A/Brisbane/11/2010 X-197 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI325047 A/Perth/10/2010 X-207 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317841 A/Puerto Rico/8-V24/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317833 A/Puerto Rico/8-KV8/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317825 A/Puerto Rico/8-KV7/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317817 A/Puerto Rico/8-KV6/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317809 A/Puerto Rico/8-KV5/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317801 A/Puerto Rico/8-KV4/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317793 A/Puerto Rico/8-KV3/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317785 A/Puerto Rico/8-KV2/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317777 A/Puerto Rico/8-KV1/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317769 A/Puerto Rico/8-JV18/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317761 A/Puerto Rico/8-JV9/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317753 A/Puerto Rico/8-JV3/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317745 A/Puerto Rico/8-JV2/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317737 A/Puerto Rico/8-JV1/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317729 A/Puerto Rico/8-CV10/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317721 A/Puerto Rico/8-CV9/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317713 A/Puerto Rico/8-CV8/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317705 A/Puerto Rico/8-CV7/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317697 A/Puerto Rico/8-CV6/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317681 A/Puerto Rico/8-CV2/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI317673 A/Puerto Rico/8-CV1/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI308890 A/Puerto Rico/8-WG/1934 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI300993 A/Rhode Island/01/2010 X-199 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI269534 A/X-53 (Puerto Rico/8/1934-New Jersey/11/1976) (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI254633 A/Philippines/2191/2009 X-191 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI254627 A/Victoria/210/2009 NIB-65 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI254621 A/Victoria/210/2009 IVR-155 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI254596 A/Hong Kong/26560/09 X-189 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI249809 A/reassortant/NYMC X-179A(California/07/2009 x NYMC X-157) (A/H1N1 pdm09) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI249801 A/reassortant/NYMC X-179(California/07/2009 x NYMC X-157) (A/H1N1 pdm09) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI244230 A/Victoria/210/2009 X-187 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI244226 A/Victoria/210/2009 X-187 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI244211 A/Perth/16/2009 NIB-64 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242409 A/lvPR8/34 (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242166 A/X-53A(Puerto Rico/8/1934-New Jersey/11/1976) (A/H1N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242157 A/X-31B(Puerto Rico/8/1934-Aichi/2/1968) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242141 A/X-141(Puerto Rico/8/1934-Panama/2007/1999) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242125 A/X-127(Puerto Rico/8/1934-Beijing/262/1995) (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242109 A/X-117(Puerto Rico/8/1934-Beijing/32/1992) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242101 A/X-113(X-31B-Texas/36/1991) (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242068 A/Victoria/1968 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI242002 A/NYMC X-171B(Puerto Rico/8/1934-Brisbane/10/2007) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241994 A/NYMC X-171A(Puerto Rico/8/1934-Brisbane/10/2007) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241986 A/NYMC X-171(Puerto Rico/8/1934-Brisbane/10/2007) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241978 A/NYMC X-163B(NYMC X-157-St. Petersburg/8/2006) (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241970 A/NYMC X-163A(NYMC X-157-St. Petersburg/8/2006) (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241962 A/NYMC X-163(NYMC X-157-St. Petersburg/8/2006) (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241954 A/NYMC X-161B(Puerto Rico/8/1934-Wisconsin/67/2005) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241946 A/NYMC X-161A(Puerto Rico/8/1934-Wisconsin/67/2005) (A/H3N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241938 A/NYMC X-161(Puerto Rico/8/1934-Wisconsin/67/2005) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241930 A/NYMC X-157B(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241922 A/NYMC X-157A(Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241914 A/NYMC X-149C6(Puerto Rico/8/1934-Wyoming/03/2003) (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241799 A/(Puerto Rico/8/1934-Korea/426/1968) (A/H2N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241059 A/Puerto Rico/8-1/1934 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI241034 A/New Jersey/1976 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI240848 A/Alaska/1935 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI232660 A/Hawaii/07/2009 RG-46V3 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI232657 A/Wisconsin/15/2009 X-183 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI232654 A/Perth/16/2009 NIB-64 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI179734 A/Puerto Rico/8-SV14/1934 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI176776 A/Puerto Rico/8-SV3/1934 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI176768 A/Puerto Rico/8-SV1/1934 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI159361 A/Puerto Rico/8/1934 (A/H1N1 seasonal) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI254041 A/California/07/2009 X-179A (A/H1N1 pdm09) segment 7 (MP) 1810.8 0.000000e+00 980/980 (100%)
EPI242133 A/X-135(Puerto Rico/8/1934-Japan/305/1957) (A/H2N2) segment 7 (MP) 1810.8 0.000000e+00 981/982 (99%)
EPI340960 A/Iowa/19/2010 X-209A (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317689 A/Puerto Rico/8-CV5/1934 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI269987 A/NYMC X-157 (Puerto Rico/8/1934-New York/55/2004) (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 979/979 (100%)
EPI249889 A/reassortant/NYMC X-175C(Uruguay/716/2007 x Puerto Rico/8/1934) (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI244222 A/Guangdong-Luohu/1256/2009 X-185XP (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI244218 A/Guangdong-Luohu/1256/2009 X-185XP (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI232651 A/Guangdong-Luohu/1256/2009 X-185 (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI115411 A/Puerto Rico/8/34 (A/H1N1 seasonal) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317665 A/Puerto Rico/8-9VMC3/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317657 A/Puerto Rico/8-9VMC2/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317641 A/Puerto Rico/8-9NMC3/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317633 A/Puerto Rico/8-9NMC2/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317625 A/Puerto Rico/8-9NMC1/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317617 A/Puerto Rico/8-MC/1934 (A/H1N1) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI252289 A/Puerto Rico/8/34/Mount Sinai (A/H1N1 seasonal) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI243220 A/England/939/69(H3N2) x A/PR/8/34(H1N1) (A/H0) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI242887 A/Philippines/2/82/BS [A/PR/8/24 X A/Phil/2/82 reassortant] (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI242144 A/X-31 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI317649 A/Puerto Rico/8-9VMC1/1934 (A/H1N1) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%)
EPI243214 A/X-31 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%)
EPI317870 A/reassortant/CDC2005712034(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)
EPI317862 A/reassortant/IgYRP16(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)
EPI317854 A/reassortant/IgYRP2(California/07/2004 x Puerto Rico/8/1934) (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)
EPI252291 A/Puerto Rico/8/34 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)
EPI252230 A/Puerto Rico/8/34 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)
EPI244011 A/reassortant/NIBRG-14(Viet Nam/1194/2004 x Puerto Rico/8/1934) (A/H5N1) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%)

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target

Posted: Mon Jan 23, 2012 4:56 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

niman wrote:

5:3 A/reassortant NYMC X-2013 (A/PR8/34 x A/Indiana/10/2011 (HA, NA and PB2) H3N2v)

Note that vaccine construct includes IN/10/11 PB2 in addition to H3 and N2.

The prior target, A/Minnesota/11/2010 only used the H3 and N2 from the target.

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niman

Post subject: Re: New H3N2v Pandemic Vaccine Target - A/Indiana/10/2011

Posted: Mon Jan 23, 2012 5:55 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27270
Location: Pittsburgh, PA USA

Commentary

http://www.recombinomics.com/News/01231 ... N1011.html

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