Rhiza Labs FluTracker Forum

Hubei/01/2010 is human case (22F) from May, 2010.

_________________
www.twitter.com/hniman

As noted, the above case has V223I, D225G, M230I (as has been seen in wild birds).

_________________
www.twitter.com/hniman

http://www.recombinomics.com/News/12301 ... lease.html

Critical H5N1 Case In Shenzen China
Recombinomics Commentary 22:45
December 30, 2011

In early 2003 there was a smaller by instructive cluster of H5N1 in a Hong Kong fanily who travel to Fujian province. The daughter died in China, while the father and sone returned to Hong Kong where H5N1 was isolated from each. The father also died but the son survived and both sets of sequences were identical and had the HA receptor binding domain change S227N, which is aother likely change leading to enhanced transmission. Other adjacent changes are already circulating in clade 2.3.2 in the area. These changes, V223I and M230I are also of concern........

_________________
www.twitter.com/hniman

LOCUS CY098758 1715 bp cRNA linear VRL 29-NOV-2011
DEFINITION Influenza A virus (A/Hubei/1/2010(H5N1)) hemagglutinin (HA) gene,
complete cds.
ACCESSION CY098758
VERSION CY098758.1 GI:347364520
KEYWORDS .
SOURCE Influenza A virus (A/Hubei/1/2010(H5N1))
ORGANISM Influenza A virus (A/Hubei/1/2010(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1715)
AUTHORS Wan,X.F., Dong,L., Lan,Y., Long,L.P., Xu,C., Zou,S., Li,Z., Wen,L.,
Cai,Z., Wang,W., Li,X., Yuan,F., Sui,H., Zhang,Y., Dong,J., Sun,S.,
Gao,Y., Wang,M., Bai,T., Yang,L., Li,D., Yang,W., Yu,H., Wang,S.,
Feng,Z., Wang,Y., Guo,Y., Webby,R.J. and Shu,Y.
TITLE Indications that Live Poultry Markets Are a Major Source of Human
H5N1 Influenza Virus Infection in China
JOURNAL J. Virol. 85 (24), 13432-13438 (2011)
PUBMED 21976646
REFERENCE 2 (bases 1 to 1715)
AUTHORS Lan,Y., Dong,L., Li,Z., Li,X., Zhao,X., Cheng,Y., Tan,m., Yang,L.,
Zou,S., Wen,L., Wang,D., Li,D. and Shu,Y.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2011) Chinese National Influenza Center, IVDC,
China CDC, 155 Changbai Road, Changping District, Beijing, Beijing,
Beijing 102206, China
FEATURES Location/Qualifiers
source 1..1715
/organism="Influenza A virus (A/Hubei/1/2010(H5N1))"
/mol_type="viral cRNA"
/strain="A/Hubei/1/2010"
/serotype="H5N1"
/host="human; gender F; age 22"
/db_xref="taxon:1087279"
/segment="4"
/lab_host="E1 passage(s)"
/country="China: Hubei"
/collection_date="21-May-2010"
/note="deceased"
gene 3..1706
/gene="HA"
CDS 3..1706
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="AEO89181.1"
/db_xref="GI:347364521"
/translation="MEKIVLLFATISLVKSDHICIGYHANNSTEQVDTIMEKNVTVTH
AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPA
NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKNSWSDHEASLGVSAACPYQGKSSFF
RNVVWLIKKDNAYPTIKKGYNNTNQEDLLVLWGIHHPNDEAEQTRLYQNPTTYISIGT
STLNQRLVPKIATRSKINGQSGRIDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
DSTIMKSEVEYGNCNTRCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
NSPQRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
RTLDFHDSNVRNLYDKVRLQLKDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
EEARLKREEISGVKLESIGIYQILSIYSTVASSLVLAIMMAGLSLWMCSNGSLQCRIC
I"
sig_peptide 3..50
/gene="HA"
mat_peptide 51..1037
/gene="HA"
/product="HA1"
mat_peptide 1038..1703
/gene="HA"
/product="HA2"
ORIGIN
1 aaatggagaa aatagtgctt ctttttgcaa caatcagcct tgttaaaagc gatcatattt
61 gcattggtta tcatgcaaat aactcgacag agcaggttga cacaataatg gaaaagaacg
121 tgactgttac acatgcccaa gacatactgg aaaagacaca caacggtaag ctctgcgatc
181 taaatggagt gaagcctctg attttaaaag attgtagtgt agcaggatgg ctcctcggaa
241 atccaatgtg tgacgaattc atcaatgtgc cagaatggtc ttacatagta gagaaggcca
301 atccagccaa tgacctctgt tacccaggga atttcaacga ttatgaagaa ttgaaacacc
361 tattgagcag gataaaccat tttgagaaaa tacagatcat ccccaaaaat tcttggtcag
421 atcatgaagc ctcgttgggg gtgagtgcag catgtccata ccagggaaaa tcctccttct
481 tcagaaatgt ggtatggctt atcaaaaagg acaatgcata cccaacaata aagaaaggct
541 acaataatac caaccaagaa gatctcttgg tactgtgggg gattcaccat cctaatgatg
601 aggcagagca gacaaggctc tatcaaaacc caaccaccta tatttccatt gggacatcaa
661 cactaaacca gagattggta ccaaaaatag ccactaggtc caaaataaac gggcaaagtg
721 gcaggataga tttcttctgg acaattttaa aaccgaatga tgcaatccac ttcgagagta
781 atggaaattt cattgctcca gaatatgcat acaaaattgt caagaaagga gactcaacaa
841 ttatgaaaag tgaagtggaa tatggtaact gcaacaccag gtgtcagact ccaatagggg
901 cgataaactc cagtatgcca ttccacaaca tacaccctct caccatcgga gaatgtccca
961 aatatgtgaa atcaaacaaa ctagtccttg cgactgggct cagaaatagt cctcaaagag
1021 agagaaggag aaaaagagga ttgtttggag ctatagcagg ttttatagag ggaggatggc
1081 agggaatggt agatggttgg tatgggtacc accacagcaa tgagcagggg agtgggtacg
1141 ctgcagacaa agaatctact caaaaggcaa tagacggggt caccaataag gtcaactcga
1201 tcattgacaa aatgaacact cagtttgagg ccgtaggaag ggaatttaat aacttagaga
1261 ggagaataga gaatttgaac aagaagatgg aagacggatt cctagatgtc tggacttata
1321 atgctgaact tctggttctc atggaaaatg agagaactct agacttccat gactcaaatg
1381 tcaggaacct ttacgacaag gtcagactac agcttaagga taatgcaaaa gagctgggta
1441 acggttgttt cgagttctat cacaaatgtg ataatgaatg tatggaaagt gtaagaaacg
1501 gaacgtatga ctacccgcag tattcagaag aagcaagatt aaaaagagag gaaataagtg
1561 gagtaaaatt ggaatcaata ggaatctacc aaatactgtc aatttattca acagtggcga
1621 gttccctagt actggcaatc atgatggctg gtctatcttt atggatgtgt tccaacgggt
1681 cgttacagtg cagaatttgc atttaagttt gtgag

_________________
www.twitter.com/hniman

Top 100 matches at Genbank (wild bird)

CY098758.1 Influenza A virus (A/Hubei/1/2010(H5N1)) hemagglutinin (HA) gene, complete cds 3094 3094 100% 0.0 100%
CY103897.1 Influenza A virus (A/reassortant/USCDC_RG30(Hubei/1/2010 x Puerto Rico/8/1934)(H5N1)) hemagglutinin (HA) gene, complete cds 3005 3005 99% 0.0 99%
JN543378.1 Influenza A virus (A/environment/Chang Sha/25/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2994 2994 100% 0.0 99%
CY063318.2 Influenza A virus (A/great crested-grebe/Qinghai/1/2009(H5N1)) segment 4 sequence 2985 2985 100% 0.0 99%
AB523767.1 Influenza A virus (A/bar-headed goose/Mongolia/X53/2009(H5N1)) HA gene for haemagglutinin, complete cds 2985 2985 100% 0.0 99%
AB523759.1 Influenza A virus (A/ruddy shelduck/Mongolia/X42/2009(H5N1)) HA gene for haemagglutinin, complete cds 2985 2985 100% 0.0 99%
AB523366.1 Influenza A virus (A/bar-headed goose/Mongolia/X54/2009(H5N1)) HA gene for haemagglutinin, complete cds 2985 2985 100% 0.0 99%
AB521999.1 Influenza A virus (A/bar-headed goose/Mongolia/X25/2009(H5N1)) HA gene for haemagglutinin, complete cds
CY098293.1| Influenza A virus (A/ruddy shelduck/Mongolia/911T/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2985 2985 100% 0.0 99%
HQ020375.1 Influenza A virus (A/great cormorant/Qinghai/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2980 2980 100% 0.0 99%
HQ020367.1 Influenza A virus (A/brown-headed gull/Qinghai/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2980 2980 100% 0.0 99%
AB523368.1 Influenza A virus (A/ruddy shelduck/Mongolia/X63/2009(H5N1)) HA gene for haemagglutinin, complete cds 2980 2980 100% 0.0 99%
AB522001.1 Influenza A virus (A/common goldeneye/Mongolia/X59/2009(H5N1)) HA gene for haemagglutinin, complete cds 2980 2980 100% 0.0 99%
GQ386150.1 Influenza A virus (A/bean goose/Tyva/10/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2980 2980 100% 0.0 99%
HQ020371.1 Influenza A virus (A/great black-headed gull/Qinghai/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2976 2976 100% 0.0 98%
HQ020369.1 Influenza A virus (A/great black-headed gull/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2976 2976 100% 0.0 98%
CY098291.1 Influenza A virus (A/herring gull/Mongolia/833T/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2976 2976 100% 0.0 98%
AB523775.1 Influenza A virus (A/common goldeneye/Mongolia/X60/2009(H5N1)) HA gene for haemagglutinin, complete cds 2976 2976 100% 0.0 98%
HQ020374.1 Influenza A virus (A/great black-headed gull/Qinghai/6/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2971 2971 100% 0.0 98%
HQ020370.1 Influenza A virus (A/great black-headed gull/Qinghai/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2971 2971 100% 0.0 98%
AB517667.1 Influenza A virus (A/whooper swan/Mongolia/8/2009(H5N1)) HA gene for haemagglutinin, complete cds 2971 2971 100% 0.0 98%
AB517665.1 Influenza A virus (A/whooper swan/Mongolia/2/2009(H5N1)) HA gene for haemagglutinin, complete cds 2971 2971 100% 0.0 98%
JN543373.1 Influenza A virus (A/environment/Chang Sha/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2967 2967 100% 0.0 98%
HM006730.1 Influenza A virus (A/bar-headed goose/Mongolia/X53/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2967 2967 99% 0.0 99%
AB520708.1 Influenza A virus (A/whooper swan/Mongolia/6/2009(H5N1)) HA gene for haemagglutinin, complete cds 2967 2967 99% 0.0 98%
GQ386142.1 Influenza A virus (A/grebe/Tyva/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2967 2967 100% 0.0 98%
GQ338087.1 Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2967 2967 100% 0.0 98%
GQ338084.1 Influenza A virus (A/black-headed gull/Tyva/115/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2967 2967 100% 0.0 98%
HQ020372.1 Influenza A virus (A/great black-headed gull/Qinghai/4/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2962 2962 100% 0.0 98%
HQ020368.1 Influenza A virus (A/brown-headed gull/Qinghai/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2962 2962 100% 0.0 98%
JN613389.1 Influenza A virus (A/chicken/Nepal/5-1cl/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2960 2960 99% 0.0 99%
HM006733.1 Influenza A virus (A/common goldeneye/Mongolia/X60/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2960 2960 99% 0.0 98%
JN613385.1 Influenza A virus (A/chicken/Nepal/81/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2958 2958 99% 0.0 99%
AB569607.1 Influenza A virus (A/whooper swan/Mongolia/11/2010(H5N1)) viral cRNA, segment 4, complete sequence 2958 2958 100% 0.0 98%
JN986881.1 Influenza A virus (A/duck/Vietnam/QT801/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2957 2957 99% 0.0 98%
JN613386.1 Influenza A virus (A/chicken/Nepal/115/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2957 2957 99% 0.0 99%
JN543374.1 Influenza A virus (A/environment/Chang Sha/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2953 2953 100% 0.0 98%
HQ131674.1 Influenza A virus (A/great crested grebe/Tyva/22/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2953 2953 100% 0.0 98%
AB569609.1 Influenza A virus (A/whooper swan/Mongolia/21/2010(H5N1)) viral cRNA, segment 4, complete sequence 2953 2953 100% 0.0 98%
HQ020364.1 Influenza A virus (A/bar-headed goose/Qinghai/1/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2949 2949 100% 0.0 98%
AB676810.1 Influenza A virus (A/goshawk/Tochigi/64/2011(H5N1)) HA gene for haemagglutinin, complete cds 2944 2944 100% 0.0 98%
JN543375.1 Influenza A virus (A/environment/Chang Sha/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2944 2944 100% 0.0 98%
AB612901.1 Influenza A virus (A/duck/Hokkaido/WZ83/2010(H5N1)) viral cRNA, segment 4, complete sequence
AB612909.1| Influenza A virus (A/duck/Hokkaido/WZ101/2010(H5N1)) viral cRNA, segment 4, complete sequence 2944 2944 100% 0.0 98%
JN613390.1 Influenza A virus (A/chicken/Nepal/2-53/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2942 2942 99% 0.0 98%
CY036205.1 Influenza A virus (A/little egret/Hong Kong/8863/2007(H5N1)) segment 4 sequence 2942 2942 99% 0.0 98%
AB677923.1 Influenza A virus (A/tundra swan/Tottori/12-002/2010(H5N1)) viral cRNA, segment 4, complete sequence 2940 2940 100% 0.0 98%
AB677891.1 Influenza A virus (A/mandarin duck/Kochi/3901C005/2011(H5N1)) viral cRNA, segment 4, complete sequence 2940 2940 100% 0.0 98%
AB677883.1 Influenza A virus (A/owl/Tokushima/3602A023/2011(H5N1)) viral cRNA, segment 4, complete sequence 2940 2940 100% 0.0 98%
AB677859.1 Influenza A virus (A/mandarin duck/Oita/4402B056/2011(H5N1)) viral cRNA, segment 4, complete sequence 2940 2940 100% 0.0 98%
CY098853.1 Influenza A virus (A/water/Hunan/7/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2940 2940 100% 0.0 98%
AB617579.1 Influenza A virus (A/peregrine falcon/Tochigi/15/2011(H5N1)) viral cRNA, segment 4, complete sequence 2940 2940 100% 0.0 98%
JN613384.1 Influenza A virus (A/chicken/Nepal/A136/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2938 2938 99% 0.0 98%
CY098352.1 Influenza A virus (A/duck/Lao/471/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2938 2938 99% 0.0 98%
CY098344.1 Influenza A virus (A/duck/Lao/469/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2938 2938 99% 0.0 98%
CY098337.1 Influenza A virus (A/duck/Lao/463/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2938 2938 99% 0.0 98%
HM006735.1 Influenza A virus (A/common goldeneye/Mongolia/X59/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2938 2938 98% 0.0 99%
JN613383.1 Influenza A virus (A/chicken/Nepal/A135/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2937 2937 99% 0.0 98%
HQ020376.1 Influenza A virus (A/great crested grebe/Qinghai/1/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2935 2935 100% 0.0 98%
AB677915.1 Influenza A virus (A/peregrine falcon/Aichi/2302O017/2011(H5N1)) viral cRNA, segment 4, complete sequence 2935 2935 100% 0.0 98%
AB677875.1 Influenza A virus (A/mandarin duck/Miyazaki/22M807-1/2011(H5N1)) viral cRNA, segment 4, complete sequence 2935 2935 100% 0.0 98%
JN613388.1 Influenza A virus (A/chicken/Nepal/105/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2935 2935 99% 0.0 98%
JN613380.1 Influenza A virus (A/duck/Nepal/DTS24/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2935 2935 99% 0.0 98%
CY098292.1 Influenza A virus (A/tundra swan/Mongolia/1T/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2935 2935 100% 0.0 98%
HQ630838.1 Influenza A virus (A/grebe/Tyva/2/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2935 2935 100% 0.0 98%
AB569353.1 Influenza A virus (A/whooper swan/Mongolia/7/2010(H5N1)) HA gene for haemagglutinin, complete cds 2935 2935 100% 0.0 98%
JN986882.1 Influenza A virus (A/duck/Vietnam/QT802/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2933 2933 99% 0.0 98%
JN613387.1 Influenza A virus (A/chicken/Nepal/111/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2933 2933 99% 0.0 98%
JN613379.1 Influenza A virus (A/duck/Nepal/DTS22/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2933 2933 99% 0.0 98%
AB677931.1 Influenza A virus (A/hooded crane/Kagoshima/4612J008/2010(H5N1)) viral cRNA, segment 4, complete sequence 2931 2931 100% 0.0 98%
AB677867.1 Influenza A virus (A/mandarin duck/Nagasaki/4202A023/2011(H5N1)) viral cRNA, segment 4, complete sequence 2931 2931 100% 0.0 98%
AB675536.1 Influenza A virus (A/tufted duck/Fukushima/5/2011(H5N1)) viral cRNA, segment 4, complete sequence 2931 2931 100% 0.0 98%
AB675544.1 Influenza A virus (A/tufted duck/Fukushima/7/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675503.1| Influenza A virus (A/tufted duck/Fukushima/4/2011(H5N1)) viral cRNA, segment 4, complete sequence 2931 2931 100% 0.0 98%
AB569348.1 Influenza A virus (A/whooper swan/Mongolia/1/2010(H5N1)) HA gene for haemagglutinin, complete cds 2931 2931 100% 0.0 98%
HM006745.1 Influenza A virus (A/whooper swan/Mongolia/7/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2929 2929 98% 0.0 98%
HM006742.1 Influenza A virus (A/whooper swan/Mongolia/5/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2929 2929 98% 0.0 98%
HM006736.1 Influenza A virus (A/ruddy shelduck/Mongolia/X42/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2929 2929 98% 0.0 99%
AB677843.1 Influenza A virus (A/common pochard/Shimane/5502B024/2011(H5N1)) viral cRNA, segment 4, complete sequence 2926 2926 100% 0.0 98%
AB629713.1 Influenza A virus (A/peregrine falcon/Aomori/7/2011(H5N1)) viral cRNA, segment 4, complete sequence 2926 2926 100% 0.0 98%
AB677907.1 Influenza A virus (A/peregrine falcon/Kyoto/2602A009/2011(H5N1)) viral cRNA, segment 4, complete sequence 2922 2922 100% 0.0 98%
AB677899.1 Influenza A virus (A/great drested grebe/Hyogo/2802E082/2011(H5N1)) viral cRNA, segment 4, complete sequence 2922 2922 100% 0.0 98%
AB629700.1 Influenza A virus (A/tundra swan/Fukushima/207/2011(H5N1)) viral cRNA, segment 4, complete sequence 2922 2922 100% 0.0 98%
AB629698.1 Influenza A virus (A/tufted duck/Fukushima/16/2011(H5N1)) viral cRNA, segment 4, complete sequence 2922 2922 100% 0.0 98%
AB615237.1 Influenza A virus (A/tufted duck/Fukushima/2/2011(H5N1)) viral cRNA, segment 4, complete sequence 2922 2922 100% 0.0 98%
JF699675.1 Influenza A virus (A/mandarin duck/Korea/K10-515/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2920 2920 99% 0.0 98%
JF699674.1 Influenza A virus (A/mandarin duck/Korea/K10-485/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2920 2920 99% 0.0 98%
JF699673.1 Influenza A virus (A/mandarin duck/Korea/K10-483/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds
JN202559.1| Influenza A virus (A/Mallard duck/Korea/W404/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2920 2920 99% 0.0 98%
HM006728.1 Influenza A virus (A/bar-headed goose/Mongolia/X25/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2919 2919 97% 0.0 99%
AB677851.1 Influenza A virus (A/tufted duck/Yamaguchi/3502B007/2011(H5N1)) viral cRNA, segment 4, complete sequence 2917 2917 100% 0.0 98%
CY095689.1 Influenza A virus (A/chicken/Viet Nam/TMU009/2008(H5N1)) hemagglutinin (HA) gene, complete cds 2917 2917 100% 0.0 98%
AB620022.1 Influenza A virus (A/whooper swan/Hokkaido/3/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB621345.1| Influenza A virus (A/pintail/Hokkaido/1/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB621347.1| Influenza A virus (A/whooper swan/Hokkaido/6/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB621349.1| Influenza A virus (A/greater scaup/Hokkaido/2/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB610972.2| Influenza A virus (A/whooper swan/Hokkaido/4/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629702.1| Influenza A virus (A/greater scaup/Hokkaido/28/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629704.1| Influenza A virus (A/whooper swan/Hokkaido/13-27/2011(H5N1)) viral cRNA, segment 4, complete
AB629706.1| Influenza A virus (A/whooper swan/Hokkaido/A13/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629708.1| Influenza A virus (A/whooper swan/Hokkaido/13-21/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675568.1| Influenza A virus (A/whooper swan/Hokkaido/3/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675576.1| Influenza A virus (A/whooper swan/Hokkaido/6/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675558.1| Influenza A virus (A/pintail/Hokkaido/1/2011(H5N1)) viral cRNA, segment 4, complete sequence 2917 2917 100% 0.0 98%
HQ695910.1 Influenza A virus (A/mallard/Korea/1195/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2915 2915 99% 0.0 98%
JN202558.1 Influenza A virus (A/Mallard duck/Korea/W401/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2915 2915 99% 0.0 98%
CY036221.1 Influenza A virus (A/common buzzard/Hong Kong/9213/2007(H5N1)) segment 4 sequence 2915 2915 99% 0.0 98%
JF699672.1 Influenza A virus (A/mandarin duck/Korea/K10-480/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2911 2911 99% 0.0 98%
HM006747.1 Influenza A virus (A/whooper swan/Mongolia/9/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2910 2910 97% 0.0 98%
HM006740.1 Influenza A virus (A/whooper swan/Mongolia/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2910 2910 97% 0.0 98%
GU182150.1 Influenza A virus (A/duck/Hunan/3/2007(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2908 2908 100% 0.0 98%
FJ654295.1 Influenza A virus (A/chicken/Primorsky/85/2008(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2908 2908 100% 0.0 98%
EU676174.1 Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) hemagglutinin (HA) gene, complete cds 2908 2908 100% 0.0 98%
CY036229.1 Influenza A virus (A/black-crowned night heron/Hong Kong/659/2008(H5N1)) segment 4 sequence 2904 2904 99% 0.0 98%
AB458247.1 Influenza A virus (A/whooper swan/Aomori/2/2008(H5N1)) HA gene for haemagglutinin, complete cds 2904 2904 100% 0.0 98%

_________________
www.twitter.com/hniman

Top 100 matches at GISAID

EPI337231 A/Hubei/1/2010 (A/H5N1) segment 4 (HA) 3164.4 0.000000e+00 1713/1713 (100%)
EPI267032 A/Hubei/1/2010 (A/H5N1) segment 4 (HA) 3164.4 0.000000e+00 1713/1713 (100%)
EPI284470 A/chicken/Vietnam/NCVD-421/2010 (A/H5N1) segment 4 (HA) 3077.6 0.000000e+00 1691/1704 (99%)
EPI284548 A/duck/Vietnam/NCVD-423/2010 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI332698 A/chicken/Vietnam/NCVD-700/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI284439 A/chicken/Vietnam/NCVD-389/2009 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI330998 A/chicken/Vietnam/NCVD-668/2010 (A/H5N1) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)
EPI330999 A/duck/Vietnam/NCVD-458/2010 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI335439 A/environment/Chang Sha/25/2009 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1691/1713 (98%)
EPI330996 A/duck/Vietnam/NCVD-431/2010 (A/H5N1) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%)
EPI335245 A/ruddy shelduck/Mongolia/911T/2009 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1689/1713 (98%)
EPI219350 A/rubby shelduck/Mongolia/X42/2009 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1689/1713 (98%)
EPI219313 A/bar-headed goose/Mongolia/X54/2009 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1689/1713 (98%)
EPI219308 A/bar-headed goose/Mongolia/X53/2009 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1689/1713 (98%)
EPI219303 A/bar-headed goose/Mongolia/X25/2009 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1689/1713 (98%)
EPI284469 A/chicken/Vietnam/NCVD-399/2010 (A/H5N1) segment 4 (HA) 3025.9 0.000000e+00 1683/1705 (98%)
EPI284468 A/chicken/Vietnam/NCVD-398/2010 (A/H5N1) segment 4 (HA) 3025.9 0.000000e+00 1683/1705 (98%)
EPI219355 A/rubby shelduck/Mongolia/X63/2009 (A/H5N1) segment 4 (HA) 3025.9 0.000000e+00 1688/1713 (98%)
EPI219321 A/common goldeneye/Mongolia/X59/2009 (A/H5N1) segment 4 (HA) 3025.9 0.000000e+00 1688/1713 (98%)
EPI186947 A/bean goose/Tyva/10/2009 (A/H5N1) segment 4 (HA) 3025.9 0.000000e+00 1688/1713 (98%)
EPI335247 A/herring gull/Mongolia/833T/2009 (A/H5N1) segment 4 (HA) 3020.4 0.000000e+00 1687/1713 (98%)
EPI219326 A/common goldeneye/Mongolia/X60/2009 (A/H5N1) segment 4 (HA) 3020.4 0.000000e+00 1687/1713 (98%)
EPI330997 A/chicken/Vietnam/NCVD-686/2011 (A/H5N1) segment 4 (HA) 3016.7 0.000000e+00 1680/1704 (98%)
EPI300761 A/bar-headed goose/Mongolia/X53/2009 (A/H5N1) segment 4 (HA) 3016.7 0.000000e+00 1681/1705 (98%)
EPI219391 A/whooper swan/Mongolia/8/2009 (A/H5N1) segment 4 (HA) 3014.9 0.000000e+00 1686/1713 (98%)
EPI219386 A/whooper swan/Mongolia/6/2009 (A/H5N1) segment 4 (HA) 3014.9 0.000000e+00 1686/1713 (98%)
EPI219381 A/whooper swan/Mongolia/2/2009 (A/H5N1) segment 4 (HA) 3014.9 0.000000e+00 1686/1713 (98%)
EPI336758 A/chicken/Nepal/5-1cl/2010 (A/H5N1) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%)
EPI335442 A/environment/Chang Sha/1/2009 (A/H5N1) segment 4 (HA) 3009.3 0.000000e+00 1685/1713 (98%)
EPI186939 A/grebe/Tyva/3/2009 (A/H5N1) segment 4 (HA) 3009.3 0.000000e+00 1685/1713 (98%)
EPI185240 A/great crested grebe/Tyva/120/2009 (A/H5N1) segment 4 (HA) 3009.3 0.000000e+00 1685/1713 (98%)
EPI185237 A/black-headed gull/Tyva/115/2009 (A/H5N1) segment 4 (HA) 3009.3 0.000000e+00 1685/1713 (98%)
EPI336762 A/chicken/Nepal/81/2010 (A/H5N1) segment 4 (HA) 3007.5 0.000000e+00 1678/1703 (98%)
EPI300763 A/common goldeneye/Mongolia/X60/2009 (A/H5N1) segment 4 (HA) 3007.5 0.000000e+00 1680/1706 (98%)
EPI336761 A/chicken/Nepal/115/2010 (A/H5N1) segment 4 (HA) 3005.6 0.000000e+00 1677/1702 (98%)
EPI345955 A/duck/Vietnam/QT801/2011 (A/H5N1) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%)
EPI269982 A/whooper swan/Mongolia/11/2010 (A/H5N1) segment 4 (HA) 2998.2 0.000000e+00 1684/1714 (98%)
EPI335441 A/environment/Chang Sha/2/2009 (A/H5N1) segment 4 (HA) 2992.7 0.000000e+00 1683/1714 (98%)
EPI283257 A/great crested grebe/Tyva/22/2010 (A/H5N1) segment 4 (HA) 2992.7 0.000000e+00 1682/1713 (98%)
EPI269984 A/whooper swan/Mongolia/21/2010 (A/H5N1) segment 4 (HA) 2992.7 0.000000e+00 1682/1713 (98%)
EPI336757 A/chicken/Nepal/2-53/2010 (A/H5N1) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%)
EPI300764 A/common goldeneye/Mongolia/X59/2009 (A/H5N1) segment 4 (HA) 2987.2 0.000000e+00 1667/1692 (98%)
EPI168000 A/little egret/Hong Kong/8863/2007 (A/H5N1) segment 4 (HA) 2987.2 0.000000e+00 1676/1705 (98%)
EPI336763 A/chicken/Nepal/A136/2010 (A/H5N1) segment 4 (HA) 2983.5 0.000000e+00 1673/1702 (98%)
EPI341001 A/goshawk/Tochigi/64/2011 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1681/1714 (98%)
EPI336764 A/chicken/Nepal/A135/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%)
EPI335440 A/environment/Chang Sha/3/2009 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1680/1713 (98%)
EPI335200 A/duck/Lao/463/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%)
EPI335193 A/duck/Lao/469/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%)
EPI335185 A/duck/Lao/471/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%)
EPI326390 A/duck/Hokkaido/WZ83/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1680/1713 (98%)
EPI326382 A/duck/Hokkaido/WZ101/2010 (A/H5N1) segment 4 (HA) 2981.6 0.000000e+00 1680/1713 (98%)
EPI336767 A/duck/Nepal/DTS24/2010 (A/H5N1) segment 4 (HA) 2977.9 0.000000e+00 1672/1702 (98%)
EPI336759 A/chicken/Nepal/105/2010 (A/H5N1) segment 4 (HA) 2977.9 0.000000e+00 1672/1702 (98%)
EPI289695 A/ruddy shelduck/Mongolia/X42/2009 (A/H5N1) segment 4 (HA) 2977.9 0.000000e+00 1660/1684 (98%)
EPI345954 A/duck/Vietnam/QT802/2011 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1673/1704 (98%)
EPI341914 A/mandarin duck/Oita/4402B056/2011 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI341911 A/mandarin duck/Kochi/3901C005/2011 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI341909 A/tundra swan/Tottori/12-002/2010 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI341842 A/owl/Tokushima/3602A023/2011 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI337326 A/water/Hunan/7/2009 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI336768 A/duck/Nepal/DTS22/2010 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%)
EPI336760 A/chicken/Nepal/111/2010 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%)
EPI308986 A/peregrine falcon/Tochigi/15/2011 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1680/1714 (98%)
EPI289699 A/whooper swan/Mongolia/7/2009 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1665/1692 (98%)
EPI280280 A/water/Hunan/7/2009 (A/H5N1) segment 4 (HA) 2976.1 0.000000e+00 1679/1713 (98%)
EPI289698 A/whooper swan/Mongolia/5/2009 (A/H5N1) segment 4 (HA) 2974.2 0.000000e+00 1668/1697 (98%)
EPI341912 A/mandarin duck/Miyazaki/22M807-1/2011 (A/H5N1) segment 4 (HA) 2970.5 0.000000e+00 1678/1713 (97%)
EPI341910 A/peregrine falcon/Aichi/2302O017/2011 (A/H5N1) segment 4 (HA) 2970.5 0.000000e+00 1678/1713 (97%)
EPI335246 A/tundra swan/Mongolia/1T/2010 (A/H5N1) segment 4 (HA) 2970.5 0.000000e+00 1678/1713 (97%)
EPI296699 A/grebe/Tyva/2/2010 (A/H5N1) segment 4 (HA) 2970.5 0.000000e+00 1678/1713 (97%)
EPI267938 A/whooper swan/Mongolia/7/2010 (A/H5N1) segment 4 (HA) 2970.5 0.000000e+00 1678/1713 (97%)
EPI300760 A/bar-headed goose/Mongolia/X25/2009 (A/H5N1) segment 4 (HA) 2966.8 0.000000e+00 1654/1678 (98%)
EPI341913 A/mandarin duck/Nagasaki/4202A023/2011 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI341908 A/hooded crane/Kagoshima/4612J008/2010 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI340854 A/tufted duck/Fukushima/4/2011 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI340387 A/tufted duck/Fukushima/5/2011 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI340379 A/tufted duck/Fukushima/7/2011 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI267930 A/whooper swan/Mongolia/1/2010 (A/H5N1) segment 4 (HA) 2965.0 0.000000e+00 1677/1713 (97%)
EPI341879 A/common pochard/Shimane/5502B024/2011 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1676/1713 (97%)
EPI325623 A/Mallard duck/Korea/W404/2011 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%)
EPI318122 A/peregrine falcon/Aomori/7/2011 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1676/1713 (97%)
EPI314813 A/mandarin duck/Korea/K10-515/2011 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%)
EPI314812 A/mandarin duck/Korea/K10-485/2010 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%)
EPI314811 A/mandarin duck/Korea/K10-483/2010 (A/H5N1) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%)
EPI300765 A/whooper swan/Mongolia/2/2009 (A/H5N1) segment 4 (HA) 2955.8 0.000000e+00 1652/1678 (98%)
EPI289700 A/whooper swan/Mongolia/9/2009 (A/H5N1) segment 4 (HA) 2955.8 0.000000e+00 1652/1678 (98%)
EPI341827 A/great drested grebe/Hyogo/2802E082/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1675/1713 (97%)
EPI341819 A/peregrine falcon/Kyoto/2602A009/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1675/1713 (97%)
EPI328864 A/mallard/Korea/1195/2010 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1669/1704 (97%)
EPI325622 A/Mallard duck/Korea/W401/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1669/1704 (97%)
EPI318109 A/whistling swan/Fukushima/207/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1675/1713 (97%)
EPI318107 A/duck/Fukushima/16/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1675/1713 (97%)
EPI307960 A/duck/Fukushima/2/2011 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1675/1713 (97%)
EPI168016 A/common buzzard/Hong Kong/9213/2007 (A/H5N1) segment 4 (HA) 2953.9 0.000000e+00 1670/1705 (97%)
EPI341871 A/tufted duck/Yamaguchi/3502B007/2011 (A/H5N1) segment 4 (HA) 2948.4 0.000000e+00 1674/1713 (97%)
EPI340761 A/whooper swan/Hokkaido/6/2011 (A/H5N1) segment 4 (HA) 2948.4 0.000000e+00 1674/1713 (97%)
EPI340395 A/whooper swan/Hokkaido/3/2011 (A/H5N1) segment 4 (HA) 2948.4 0.000000e+00 1674/1713 (97%)
EPI340365 A/pintail/Hokkaido/1/2011 (A/H5N1) segment 4 (HA) 2948.4 0.000000e+00 1674/1713 (97%)
EPI327220 A/chicken/Viet Nam/TMU009/2008 (A/H5N1) segment 4 (HA) 2948.4 0.000000e+00 1675/1714 (97%)

_________________
www.twitter.com/hniman

Last Hong Kong case was A/Hong Kong/6841/2010 from Nov 16, 2010

_________________
www.twitter.com/hniman

Hong Kong case also had V223I, D225G, M230I,

_________________
www.twitter.com/hniman

LOCUS HQ636461 1586 bp cRNA linear VRL 29-NOV-2010
DEFINITION Influenza A virus (A/Hong Kong/6841/2010(H5N1)) segment 4
hemagglutinin (HA) gene, partial cds.
ACCESSION HQ636461
VERSION HQ636461.1 GI:312601694
KEYWORDS .
SOURCE Influenza A virus (A/Hong Kong/6841/2010(H5N1))
ORGANISM Influenza A virus (A/Hong Kong/6841/2010(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1586)
AUTHORS Cheng,P.K.C., Leung,P.C.K. and Lim,W.W.L.
TITLE H5N1 detected in human in Hong Kong in 2010
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1586)
AUTHORS Cheng,P.K.C., Leung,P.C.K. and Lim,W.W.L.
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2010) Virology Division, Public Health Lab
Centre, 382, Nam Cheong Street, Shek Kip Mei, Kowloon, Hong Kong,
China
FEATURES Location/Qualifiers
source 1..1586
/organism="Influenza A virus (A/Hong
Kong/6841/2010(H5N1))"
/mol_type="viral cRNA"
/strain="A/Hong Kong/6841/2010"
/serotype="H5N1"
/isolation_source="sputum"
/host="Homo sapiens"
/db_xref="taxon:929449"
/segment="4"
/country="China: Hong Kong"
/collection_date="16-Nov-2010"
gene <1..>1586
/gene="HA"
CDS <1..>1586
/gene="HA"
/codon_start=2
/product="hemagglutinin"
/protein_id="ADQ92372.1"
/db_xref="GI:312601695"
/translation="QVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILKDCSVA
GWLLGNPLCDEFINVPEWSYIVEKANPANDLCYPGNFNDYEELKHLLSRINHFEKIQI
IPKDSWSDHEASLGVSAACSYQGNSSFFRNVVWLIKKDNAYPTIKKGYNNTNREDLLV
LWGIHHPNDEAEQTRLYQNPITYISIGTSTLNQRLVPKIATRSKINGQSGRIDFFWTI
LKPNDAIHFESNGNFIAPEYAYKIVKKGDSTIMRSEVEYGNCNTRCQTPIGAINSSMP
FHNIHPLTIGECPKYVKSNKLVLATGLRNSPQRERRRKRGLFGAIAGFIEGGWQGMVD
GWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRI
ENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLKDNAKELGN
GCFEFYHKCNNECMESVRNGTYDYPHYSEEARLKREEISGVKLESIGIYQILSIYSTV
TSSLVLAIMMAGLSLWMCSN"
ORIGIN
1 gcaggttgac acaataatgg aaaagaacgt tactgttaca catgcccaag acatactgga
61 aaagacacac aacgggaagc tctgcgatct aaatggagtg aagcctctga ttttaaaaga
121 ttgtagtgta gcaggatggc tcctcggaaa cccattgtgt gacgaattca tcaatgtgcc
181 agaatggtct tacatagtag agaaggccaa tccagccaac gacctctgtt acccagggaa
241 tttcaacgat tatgaagaat tgaaacacct attgagcagg ataaaccatt ttgagaaaat
301 acagatcatc cccaaagatt cttggtcaga tcatgaagcc tcattggggg tgagcgcagc
361 atgctcatac cagggaaatt cctccttctt cagaaatgtg gtatggctta tcaaaaagga
421 caatgcatac ccaacaataa agaaaggcta caataatacc aaccgagaag atctcttggt
481 attgtggggg atccaccatc ctaatgatga ggcagagcag acaaggctct atcaaaaccc
541 aatcacctat atttccattg ggacatcaac actaaaccag agattggtac caaaaatagc
601 cactagatcc aaaataaacg ggcaaagtgg caggatagat ttcttctgga caattttaaa
661 accgaatgat gcaattcact tcgagagtaa tggaaatttc attgctccag aatatgcata
721 caaaattgtc aagaaaggag actccacaat tatgaggagt gaagtggaat atggtaactg
781 caacaccagg tgtcagactc caataggggc gataaactct agtatgccat tccacaacat
841 acaccctctc accatcggag aatgtcccaa atatgtgaaa tcaaacaaat tagtccttgc
901 gactgggctc agaaatagtc ctcaaagaga gagaagaaga aaaagaggac tgtttggagc
961 tatagcaggt tttatagagg gaggatggca aggaatggta gatggttggt atgggtacca
1021 ccacagcaat gagcagggga gtggttacgc tgcagacaaa gaatctactc aaaaggcaat
1081 agacggagtc accaataagg tcaactcgat cattgacaaa atgaacactc agtttgaggc
1141 cgtaggaagg gaatttaata acttagagag gagaatagag aatttaaaca agaagatgga
1201 agacggattc ctagatgtct ggacttataa tgctgaactt ctggttctca tggaaaatga
1261 gagaactcta gacttccatg actcaaatgt caaaaacctt tacgataagg tcagactaca
1321 gcttaaggat aatgcaaaag agctgggtaa cggttgtttc gagttctatc acaaatgtaa
1381 taatgaatgt atggaaagtg taagaaacgg aacgtatgac tacccgcatt attcagaaga
1441 agcaagatta aaaagagagg aaataagtgg agtaaaattg gaatcaatag gaatctacca
1501 aatactgtca atttattcaa cagtgacgag ttccctagtg ctggcaatca tgatggctgg
1561 tctatcttta tggatgtgtt ccaacg

_________________
www.twitter.com/hniman

Top 100 sequences at Genbank
HQ636461.1 Influenza A virus (A/Hong Kong/6841/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2929 2929 100% 0.0 100%
JN543373.1 Influenza A virus (A/environment/Chang Sha/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2874 2874 100% 0.0 99%
HM006736.1 Influenza A virus (A/ruddy shelduck/Mongolia/X42/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2835 2835 100% 0.0 99%
HM006730.1 Influenza A virus (A/bar-headed goose/Mongolia/X53/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2835 2835 100% 0.0 99%
HM006728.1 Influenza A virus (A/bar-headed goose/Mongolia/X25/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2835 2835 100% 0.0 99%
AB523767.1 Influenza A virus (A/bar-headed goose/Mongolia/X53/2009(H5N1)) HA gene for haemagglutinin, complete cds 2835 2835 100% 0.0 99%
AB523759.1 Influenza A virus (A/ruddy shelduck/Mongolia/X42/2009(H5N1)) HA gene for haemagglutinin, complete cds 2835 2835 100% 0.0 99%
AB523366.1 Influenza A virus (A/bar-headed goose/Mongolia/X54/2009(H5N1)) HA gene for haemagglutinin, complete cds 2835 2835 100% 0.0 99%
AB521999.1 Influenza A virus (A/bar-headed goose/Mongolia/X25/2009(H5N1)) HA gene for haemagglutinin, complete cds
CY098293.1| Influenza A virus (A/ruddy shelduck/Mongolia/911T/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2835 2835 100% 0.0 99%
JN613389.1 Influenza A virus (A/chicken/Nepal/5-1cl/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2830 2830 100% 0.0 99%
JN613386.1 Influenza A virus (A/chicken/Nepal/115/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2830 2830 100% 0.0 99%
JN613385.1 Influenza A virus (A/chicken/Nepal/81/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2830 2830 100% 0.0 99%
CY098352.1 Influenza A virus (A/duck/Lao/471/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2830 2830 100% 0.0 99%
CY098344.1 Influenza A virus (A/duck/Lao/469/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2830 2830 100% 0.0 99%
CY098337.1 Influenza A virus (A/duck/Lao/463/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2830 2830 100% 0.0 99%
HM006735.1 Influenza A virus (A/common goldeneye/Mongolia/X59/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2830 2830 100% 0.0 99%
HM006732.1 Influenza A virus (A/bar-headed goose/Mongolia/X54/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2830 2830 100% 0.0 99%
AB523368.1 Influenza A virus (A/ruddy shelduck/Mongolia/X63/2009(H5N1)) HA gene for haemagglutinin, complete cds 2830 2830 100% 0.0 99%
AB522001.1 Influenza A virus (A/common goldeneye/Mongolia/X59/2009(H5N1)) HA gene for haemagglutinin, complete cds 2830 2830 100% 0.0 99%
GQ386150.1 Influenza A virus (A/bean goose/Tyva/10/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2830 2830 100% 0.0 99%
HQ020371.1 Influenza A virus (A/great black-headed gull/Qinghai/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2824 2824 100% 0.0 99%
HQ020367.1 Influenza A virus (A/brown-headed gull/Qinghai/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2824 2824 100% 0.0 99%
HM006747.1 Influenza A virus (A/whooper swan/Mongolia/9/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006746.1 Influenza A virus (A/whooper swan/Mongolia/8/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006745.1 Influenza A virus (A/whooper swan/Mongolia/7/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006743.1 Influenza A virus (A/whooper swan/Mongolia/6/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006741.1 Influenza A virus (A/whooper swan/Mongolia/4/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006740.1 Influenza A virus (A/whooper swan/Mongolia/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
HM006733.1 Influenza A virus (A/common goldeneye/Mongolia/X60/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2824 2824 100% 0.0 99%
CY063318.2 Influenza A virus (A/great crested-grebe/Qinghai/1/2009(H5N1)) segment 4 sequence 2824 2824 100% 0.0 99%
AB523775.1 Influenza A virus (A/common goldeneye/Mongolia/X60/2009(H5N1)) HA gene for haemagglutinin, complete cds 2824 2824 100% 0.0 99%
AB520708.1 Influenza A virus (A/whooper swan/Mongolia/6/2009(H5N1)) HA gene for haemagglutinin, complete cds 2824 2824 100% 0.0 99%
AB517667.1 Influenza A virus (A/whooper swan/Mongolia/8/2009(H5N1)) HA gene for haemagglutinin, complete cds 2824 2824 100% 0.0 99%
AB517665.1 Influenza A virus (A/whooper swan/Mongolia/2/2009(H5N1)) HA gene for haemagglutinin, complete cds 2824 2824 100% 0.0 99%
HQ020375.1 Influenza A virus (A/great cormorant/Qinghai/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2819 2819 100% 0.0 99%
CY098291.1 Influenza A virus (A/herring gull/Mongolia/833T/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2819 2819 100% 0.0 99%
GQ386142.1 Influenza A virus (A/grebe/Tyva/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2819 2819 100% 0.0 99%
HQ020369.1 Influenza A virus (A/great black-headed gull/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2813 2813 100% 0.0 99%
JN613390.1 Influenza A virus (A/chicken/Nepal/2-53/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2813 2813 100% 0.0 99%
JN543374.1 Influenza A virus (A/environment/Chang Sha/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2813 2813 100% 0.0 99%
HM006742.1 Influenza A virus (A/whooper swan/Mongolia/5/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2813 2813 100% 0.0 99%
HQ020370.1 Influenza A virus (A/great black-headed gull/Qinghai/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2811 2811 99% 0.0 99%
JN613387.1 Influenza A virus (A/chicken/Nepal/111/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2809 2809 99% 0.0 99%
HQ020374.1 Influenza A virus (A/great black-headed gull/Qinghai/6/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2808 2808 100% 0.0 99%
HQ020372.1 Influenza A virus (A/great black-headed gull/Qinghai/4/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2808 2808 100% 0.0 99%
JN613384.1 Influenza A virus (A/chicken/Nepal/A136/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2808 2808 100% 0.0 99%
JN613383.1 Influenza A virus (A/chicken/Nepal/A135/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2808 2808 100% 0.0 99%
AB569609.1 Influenza A virus (A/whooper swan/Mongolia/21/2010(H5N1)) viral cRNA, segment 4, complete sequence 2808 2808 100% 0.0 99%
AB676810.1 Influenza A virus (A/goshawk/Tochigi/64/2011(H5N1)) HA gene for haemagglutinin, complete cds 2802 2802 100% 0.0 99%
JN613388.1 Influenza A virus (A/chicken/Nepal/105/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2802 2802 100% 0.0 99%
JN613380.1 Influenza A virus (A/duck/Nepal/DTS24/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2802 2802 100% 0.0 99%
JN613379.1 Influenza A virus (A/duck/Nepal/DTS22/2010(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2802 2802 100% 0.0 99%
JN543375.1 Influenza A virus (A/environment/Chang Sha/3/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2802 2802 100% 0.0 99%
AB612901.1 Influenza A virus (A/duck/Hokkaido/WZ83/2010(H5N1)) viral cRNA, segment 4, complete sequence
AB612909.1| Influenza A virus (A/duck/Hokkaido/WZ101/2010(H5N1)) viral cRNA, segment 4, complete sequence 2802 2802 100% 0.0 99%
HQ131674.1 Influenza A virus (A/great crested grebe/Tyva/22/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2802 2802 100% 0.0 99%
GQ338087.1 Influenza A virus (A/great crested grebe/Tyva/120/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2802 2802 100% 0.0 99%
HQ020368.1 Influenza A virus (A/brown-headed gull/Qinghai/2/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2796 2796 100% 0.0 98%
AB677923.1 Influenza A virus (A/tundra swan/Tottori/12-002/2010(H5N1)) viral cRNA, segment 4, complete sequence 2796 2796 100% 0.0 98%
AB677891.1 Influenza A virus (A/mandarin duck/Kochi/3901C005/2011(H5N1)) viral cRNA, segment 4, complete sequence 2796 2796 100% 0.0 98%
AB677859.1 Influenza A virus (A/mandarin duck/Oita/4402B056/2011(H5N1)) viral cRNA, segment 4, complete sequence 2796 2796 100% 0.0 98%
HQ695910.1 Influenza A virus (A/mallard/Korea/1195/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2796 2796 100% 0.0 98%
JF699675.1 Influenza A virus (A/mandarin duck/Korea/K10-515/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2796 2796 100% 0.0 98%
JF699674.1 Influenza A virus (A/mandarin duck/Korea/K10-485/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2796 2796 100% 0.0 98%
JF699673.1 Influenza A virus (A/mandarin duck/Korea/K10-483/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds
JN202559.1| Influenza A virus (A/Mallard duck/Korea/W404/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2796 2796 100% 0.0 98%
AB617579.1 Influenza A virus (A/peregrine falcon/Tochigi/15/2011(H5N1)) viral cRNA, segment 4, complete sequence 2796 2796 100% 0.0 98%
AB569607.1 Influenza A virus (A/whooper swan/Mongolia/11/2010(H5N1)) viral cRNA, segment 4, complete sequence 2796 2796 100% 0.0 98%
AB677915.1 Influenza A virus (A/peregrine falcon/Aichi/2302O017/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
AB677883.1 Influenza A virus (A/owl/Tokushima/3602A023/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
AB677875.1 Influenza A virus (A/mandarin duck/Miyazaki/22M807-1/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
AB675536.1 Influenza A virus (A/tufted duck/Fukushima/5/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
AB675544.1 Influenza A virus (A/tufted duck/Fukushima/7/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675503.1| Influenza A virus (A/tufted duck/Fukushima/4/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
JN202558.1 Influenza A virus (A/Mallard duck/Korea/W401/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2791 2791 100% 0.0 98%
AB629713.1 Influenza A virus (A/peregrine falcon/Aomori/7/2011(H5N1)) viral cRNA, segment 4, complete sequence 2791 2791 100% 0.0 98%
GQ338084.1 Influenza A virus (A/black-headed gull/Tyva/115/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2791 2791 100% 0.0 98%
HQ020364.1 Influenza A virus (A/bar-headed goose/Qinghai/1/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2785 2785 100% 0.0 98%
AB677931.1 Influenza A virus (A/hooded crane/Kagoshima/4612J008/2010(H5N1)) viral cRNA, segment 4, complete sequence 2785 2785 100% 0.0 98%
AB677867.1 Influenza A virus (A/mandarin duck/Nagasaki/4202A023/2011(H5N1)) viral cRNA, segment 4, complete sequence 2785 2785 100% 0.0 98%
CY098292.1 Influenza A virus (A/tundra swan/Mongolia/1T/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2785 2785 100% 0.0 98%
AB629700.1 Influenza A virus (A/tundra swan/Fukushima/207/2011(H5N1)) viral cRNA, segment 4, complete sequence 2785 2785 100% 0.0 98%
AB629698.1 Influenza A virus (A/tufted duck/Fukushima/16/2011(H5N1)) viral cRNA, segment 4, complete sequence 2785 2785 100% 0.0 98%
JF699672.1 Influenza A virus (A/mandarin duck/Korea/K10-480/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2785 2785 100% 0.0 98%
HQ630838.1 Influenza A virus (A/grebe/Tyva/2/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2785 2785 100% 0.0 98%
AB569353.1 Influenza A virus (A/whooper swan/Mongolia/7/2010(H5N1)) HA gene for haemagglutinin, complete cds 2785 2785 100% 0.0 98%
HQ020376.1 Influenza A virus (A/great crested grebe/Qinghai/1/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2780 2780 100% 0.0 98%
AB615237.1 Influenza A virus (A/tufted duck/Fukushima/2/2011(H5N1)) viral cRNA, segment 4, complete sequence 2780 2780 100% 0.0 98%
AB569348.1 Influenza A virus (A/whooper swan/Mongolia/1/2010(H5N1)) HA gene for haemagglutinin, complete cds 2780 2780 100% 0.0 98%
AB677899.1 Influenza A virus (A/great drested grebe/Hyogo/2802E082/2011(H5N1)) viral cRNA, segment 4, complete sequence 2774 2774 100% 0.0 98%
AB677851.1 Influenza A virus (A/tufted duck/Yamaguchi/3502B007/2011(H5N1)) viral cRNA, segment 4, complete sequence 2774 2774 100% 0.0 98%
AB677843.1 Influenza A virus (A/common pochard/Shimane/5502B024/2011(H5N1)) viral cRNA, segment 4, complete sequence 2774 2774 100% 0.0 98%
AB620022.1 Influenza A virus (A/whooper swan/Hokkaido/3/2011(H5N1)) viral cRNA, segment 4, complete sequence >dbj|AB621345.1| Influenza A virus (A/pintail/Hokkaido/1/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB621347.1| Influenza A virus (A/whooper swan/Hokkaido/6/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB621349.1| Influenza A virus (A/greater scaup/Hokkaido/2/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB610972.2| Influenza A virus (A/whooper swan/Hokkaido/4/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629702.1| Influenza A virus (A/greater scaup/Hokkaido/28/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629704.1| Influenza A virus (A/whooper swan/Hokkaido/13-27/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629706.1| Influenza A virus (A/whooper swan/Hokkaido/A13/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB629708.1| Influenza A virus (A/whooper swan/Hokkaido/13-21/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675568.1| Influenza A virus (A/whooper swan/Hokkaido/3/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675576.1| Influenza A virus (A/whooper swan/Hokkaido/6/2011(H5N1)) viral cRNA, segment 4, complete sequence
AB675558.1| Influenza A virus (A/pintail/Hokkaido/1/2011(H5N1)) viral cRNA, segment 4, complete sequence 2774 2774 100% 0.0 98%
AB677907.1 Influenza A virus (A/peregrine falcon/Kyoto/2602A009/2011(H5N1)) viral cRNA, segment 4, complete sequence 2769 2769 100% 0.0 98%
CY036205.1 Influenza A virus (A/little egret/Hong Kong/8863/2007(H5N1)) segment 4 sequence 2769 2769 100% 0.0 98%
CY098853.1 Influenza A virus (A/water/Hunan/7/2009(H5N1)) hemagglutinin (HA) gene, complete cds 2747 2747 100% 0.0 98%
HM006738.1 Influenza A virus (A/whooper swan/Mongolia/1/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 2737 2737 97% 0.0 99%
CY098758.1 Influenza A virus (A/Hubei/1/2010(H5N1)) hemagglutinin (HA) gene, complete cds 2736 2736 100% 0.0 98%
JN543378.1 Influenza A virus (A/environment/Chang Sha/25/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2736 2736 100% 0.0 98%
CY036221.1 Influenza A virus (A/common buzzard/Hong Kong/9213/2007(H5N1)) segment 4 sequence 2736 2736 100% 0.0 98%
HQ020373.1 Influenza A virus (A/great black-headed gull/Qinghai/5/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 2724 2724 100% 0.0 98%
CY036229.1 Influenza A virus (A/black-crowned night heron/Hong Kong/659/2008(H5N1)) segment 4 sequence 2719 2719 100% 0.0 98%
CY095689.1 Influenza A virus (A/chicken/Viet Nam/TMU009/2008(H5N1)) hemagglutinin (HA) gene, complete cds 2713 2713 100% 0.0 98%

_________________
www.twitter.com/hniman