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PostPosted: Sun Dec 04, 2011 7:22 am 
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In addition to recent trH3N2 swine sequences with the H1N1pdm09 M gene, and earlier trH3N2 isolates from Minnesota, collected in 2009 also has H1N1pdm09 M gene, A/swine/Minnesota/239105/2009, as noted in a recent publication describing the high frequency of reassortament in swine infected with H1N1pdm09 and the common appearance of the M gene in these isolates.

http://www.cdc.gov/eid/content/17/9/110338.htm

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PostPosted: Sun Dec 04, 2011 7:26 am 
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niman wrote:
In addition to recent trH3N2 swine sequences with the H1N1pdm09 M gene, and earlier trH3N2 isolates from Minnesota, collected in 2009 also has H1N1pdm09 M gene, A/swine/Minnesota/239105/2009, as noted in a recent publication describing the high frequency of reassortament in swine infected with H1N1pdm09 and the common appearance of the M gene in these isolates.

http://www.cdc.gov/eid/content/17/9/110338.htm

earlier comments on this publication in thread linked below

viewtopic.php?f=5&t=7460

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PostPosted: Sun Dec 04, 2011 7:30 am 
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Volume 17, Number 9—September 2011
Research
Multiple Reassortment between Pandemic (H1N1) 2009 and Endemic Influenza Viruses in Pigs, United States

Mariette F. Ducatez, Ben Hause, Evelyn Stigger-Rosser, Daniel Darnell, Cesar Corzo, Kevin Juleen, Randy Simonson, Christy Brockwell-Staats, Adam Rubrum, David Wang, Ashley Webb, Jeri-Carol Crumpton, James Lowe, Marie Gramer, and Richard J. Webby
Author affiliations: Author affiliations: St. Jude Children’s Research Hospital, Memphis, Tennessee, USA (M.F. Ducatez, E. Stigger-Rosser, D. Darnell, C. Brockwell-Staats, A. Rubrum, D. Wang, A. Webb, J.-C. Crumpton, R.J. Webby); Newport Laboratories, Worthington, Minnesota, USA (B. Hause, R. Simonson); University of Minnesota College of Veterinary Medicine, Saint Paul, Minnesota, USA (C. Corzo, K. Juleen, M. Gramer); and Carthage Veterinary Services, Carthage, Illinois, USA (J. Lowe)
Suggested citation for this article

Abstract
As a result of human-to-pig transmission, pandemic influenza A (H1N1) 2009 virus was detected in pigs soon after it emerged in humans. In the United States, this transmission was quickly followed by multiple reassortment between the pandemic virus and endemic swine viruses. Nine reassortant viruses representing 7 genotypes were detected in commercial pig farms in the United States. Field observations suggested that the newly described reassortant viruses did not differ substantially from pandemic (H1N1) 2009 or endemic strains in their ability to cause disease. Comparable growth properties of reassortant and endemic viruses in vitro supported these observations; similarly, a representative reassortant virus replicated in ferrets to the same extent as did pandemic (H1N1) 2009 and endemic swine virus. These novel reassortant viruses highlight the increasing complexity of influenza viruses within pig populations and the frequency at which viral diversification occurs in this ecologically important viral reservoir.

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PostPosted: Sun Dec 04, 2011 7:32 am 
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PB2 matches at GISAID

EPI312686 A/swine/Minnesota/239105/2009 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI337036 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI337031 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2230/2282 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3904.9 0.000000e+00 2224/2279 (97%)
EPI337369 A/swine/Minnesota/00709/2005 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI182830 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI128360 A/Ontario/1252/2007 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3871.7 0.000000e+00 2219/2280 (97%)
EPI291833 A/Minnesota/03/2008 (A/H1N1) segment 1 (PB2) 3871.7 0.000000e+00 2217/2277 (97%)
EPI337520 A/swine/Minnesota/001444/2007 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI281299 A/swine/Iowa/02096/2008 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2216/2277 (97%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%)
EPI323205 A/swine/Minnesota/65767/2006 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2218/2280 (97%)
EPI337472 A/swine/Minnesota/01358/2006 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2198/2253 (97%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI337382 A/swine/Minnesota/001200/2006 (A/H1N1) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%)
EPI324161 A/SW/MB/5-5/2009 (A/H1N1) segment 1 (PB2) 3849.5 0.000000e+00 2214/2279 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3849.5 0.000000e+00 2214/2279 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3849.5 0.000000e+00 2200/2258 (97%)
EPI314698 A/swine/QC/440-A/2009 (A/H3N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%)
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 3845.8 0.000000e+00 2197/2254 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3842.2 0.000000e+00 2194/2251 (97%)
EPI337424 A/swine/Minnesota/02053/2008 (A/H1N1) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI314646 A/swine/QC/382/2009 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI166256 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 1 (PB2) 3836.6 0.000000e+00 2193/2251 (97%)
EPI166272 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2194/2253 (97%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2194/2253 (97%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3832.9 0.000000e+00 2212/2280 (97%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI323975 A/swine/QC/398/2009 (A/H1N1) segment 1 (PB2) 3827.4 0.000000e+00 2211/2280 (96%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 3827.4 0.000000e+00 2207/2275 (97%)
EPI153512 A/swine/Ohio/75004/04 (A/H1N1) segment 1 (PB2) 3827.4 0.000000e+00 2210/2279 (96%)
EPI324093 A/swine/QC/3399-6/2009 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI324040 A/swine/QC/1697-1/2009 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%)
EPI281298 A/swine/Texas/01976/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2208/2277 (96%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3818.1 0.000000e+00 2207/2277 (96%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI166259 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 1 (PB2) 3818.1 0.000000e+00 2191/2253 (97%)
EPI98722 A/swine/IN/PU542/04 (A/H3N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI292059 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2202/2271 (96%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2202/2271 (96%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2204/2274 (96%)
EPI281305 A/swine/Minnesota/02093/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2207/2278 (96%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2207/2280 (96%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%)
EPI291888 A/Texas/14/2008 (A/H1N1) segment 1 (PB2) 3810.8 0.000000e+00 2204/2274 (96%)
EPI337480 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI9469 A/Swine/Illinois/100085A/01 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI246072 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI246064 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI246056 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%)
EPI220864 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI220848 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI220840 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)

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PostPosted: Sun Dec 04, 2011 7:40 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
PB1 matches at GISAID

EPI312687 A/swine/Minnesota/239105/2009 (A/H3N2) segment 2 (PB1) 4205.9 0.000000e+00 2277/2277 (100%)
EPI337032 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 2 (PB1) 4106.2 0.000000e+00 2259/2277 (99%)
EPI337037 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 2 (PB1) 4100.7 0.000000e+00 2259/2278 (99%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2239/2272 (98%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 4001.0 0.000000e+00 2241/2278 (98%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 4001.0 0.000000e+00 2237/2272 (98%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2236/2272 (98%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2236/2272 (98%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3991.7 0.000000e+00 2235/2272 (98%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3989.9 0.000000e+00 2239/2278 (98%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3978.8 0.000000e+00 2237/2278 (98%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3973.3 0.000000e+00 2236/2278 (98%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3973.3 0.000000e+00 2236/2278 (98%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3973.3 0.000000e+00 2232/2272 (98%)
EPI166273 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 2 (PB1) 3969.6 0.000000e+00 2222/2258 (98%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3967.7 0.000000e+00 2235/2278 (98%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3967.7 0.000000e+00 2232/2273 (98%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3967.7 0.000000e+00 2235/2278 (98%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2234/2278 (98%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2234/2278 (98%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2230/2272 (98%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3956.6 0.000000e+00 2229/2272 (98%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 3945.6 0.000000e+00 2232/2279 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3945.6 0.000000e+00 2231/2278 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2231/2278 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2231/2278 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2227/2272 (98%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3941.9 0.000000e+00 2230/2278 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3941.9 0.000000e+00 2223/2267 (98%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2226/2272 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2230/2278 (97%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2226/2272 (97%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3940.0 0.000000e+00 2230/2278 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2225/2272 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2229/2278 (97%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3934.5 0.000000e+00 2229/2278 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3934.5 0.000000e+00 2229/2278 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2228/2278 (97%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2227/2276 (97%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3928.9 0.000000e+00 2224/2272 (97%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3928.9 0.000000e+00 2229/2279 (97%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3928.9 0.000000e+00 2229/2279 (97%)
EPI291848 A/Minnesota/10/2009 (A/H1N1) segment 2 (PB1) 3923.4 0.000000e+00 2227/2278 (97%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2273 (97%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 3921.6 0.000000e+00 2219/2266 (97%)
EPI314689 A/swine/QC/1840-2/2009 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2223/2273 (97%)
EPI246073 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 2 (PB1) 3917.9 0.000000e+00 2226/2278 (97%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3917.9 0.000000e+00 2227/2279 (97%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2226/2278 (97%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 3916.0 0.000000e+00 2217/2266 (97%)
EPI337423 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2225/2278 (97%)
EPI324151 A/SW/SK/11-16/2009 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2221/2272 (97%)
EPI291809 A/Iowa/05/2007 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2221/2272 (97%)
EPI246065 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 2 (PB1) 3912.3 0.000000e+00 2225/2278 (97%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2225/2278 (97%)
EPI246057 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 2 (PB1) 3908.6 0.000000e+00 2224/2278 (97%)
EPI255752 A/swine/MN/23506/2009 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2221/2273 (97%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2224/2278 (97%)
EPI337340 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3901.2 0.000000e+00 2223/2278 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2223/2278 (97%)
EPI128358 A/Ontario/1252/2007 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2219/2272 (97%)
EPI337407 A/swine/Minnesota/02782/2009 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2222/2278 (97%)
EPI281297 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2217/2272 (97%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2222/2279 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2221/2278 (97%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2222/2279 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2217/2272 (97%)
EPI314645 A/swine/QC/382/2009 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2217/2273 (97%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2273 (97%)
EPI291879 A/South Dakota/03/2008 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2220/2278 (97%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2273 (97%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2273 (97%)
EPI281289 A/swine/North Carolina/02084/2008 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2216/2272 (97%)
EPI292039 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 2 (PB1) 3880.9 0.000000e+00 2216/2273 (97%)
EPI324162 A/SW/MB/5-5/2009 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2215/2272 (97%)
EPI314672 A/swine/QC/1698-1/2009 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2216/2273 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2215/2272 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3879.1 0.000000e+00 2219/2278 (97%)
EPI324094 A/swine/QC/3399-6/2009 (A/H1N1) segment 2 (PB1) 3875.4 0.000000e+00 2219/2279 (97%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2214/2272 (97%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3873.5 0.000000e+00 2215/2273 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2218/2278 (97%)
EPI323993 A/swine/QC/1488-2/2009 (A/H1N1) segment 2 (PB1) 3871.7 0.000000e+00 2211/2272 (97%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2219/2280 (97%)
EPI314681 A/swine/QC/414/2009 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2213/2272 (97%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2273 (97%)
EPI220857 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220849 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220841 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220833 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220825 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220817 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220809 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220801 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI220793 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI177839 A/swine/Minnesota/64585/2006 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2219/2280 (97%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2218/2280 (97%)
EPI337543 A/swine/Minnesota/02475/2008 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2216/2278 (97%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2213/2273 (97%)
EPI220881 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 2 (PB1) 3862.5 0.000000e+00 2217/2279 (97%)

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PostPosted: Sun Dec 04, 2011 7:46 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
PA matches H1N1pdm09

EPI312688 A/swine/Minnesota/239105/2009 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI324171 A/swine/MB/46/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323887 A/England/H094220579/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323806 A/England/415/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323803 A/Ireland/5/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323797 A/Ireland/3/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323561 A/Ireland/2/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323505 A/England/351/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323477 A/England/343/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI323449 A/England/303/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI321273 A/cheetah/California/D0912239/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI320665 A/Mexico City/016/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI317054 A/Managua/4877.02/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316733 A/Wisconsin/629-S0235/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316723 A/Wisconsin/629-D02294/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316718 A/Wisconsin/629-D01039/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316707 A/Wisconsin/629-D00744/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316696 A/Wisconsin/629-D01717/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316691 A/Wisconsin/629-D01115/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316638 A/Boston/107/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316625 A/Wisconsin/629-D00112/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316614 A/Wisconsin/629-D00881/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI316602 A/Wisconsin/629-D02275/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI315584 A/Boston/690/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI313113 A/Beijing/16/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI312986 A/New York/3256/2009 (A/H0N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI312751 A/New York/3251/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI312738 A/New York/3198/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308814 A/San Diego/INS72/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308641 A/Madrid/INS112/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308436 A/Mexico City/WRAIR1691N/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308380 A/San Diego/WRAIR1667P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308324 A/South Carolina/WRAIR1660P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308316 A/San Diego/WRAIR1658P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308308 A/San Diego/WRAIR1657P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308268 A/San Diego/WRAIR1649P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI308204 A/Virginia/WRAIR1511P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI300614 A/Argentina/HNRG32/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288359 A/Boston/628/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288303 A/Boston/681/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288287 A/Boston/666/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288231 A/Boston/612/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288166 A/Chile/4438/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288158 A/Chile/4406/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288142 A/Chile/4182/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288134 A/Chile/4181/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288110 A/Chile/3905/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288086 A/Chile/3760/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288062 A/Chile/3467/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI288038 A/Chile/3361/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287990 A/Chile/3123/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287982 A/Chile/3056/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287966 A/Chile/2994/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287958 A/Chile/2911/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287934 A/Chile/2851/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287926 A/Chile/2239/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287918 A/Chile/2009/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287910 A/Chile/1624/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287902 A/Chile/1603/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287894 A/Chile/1600/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287878 A/Chile/1598/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287862 A/Chile/180/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287854 A/Chile/158/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287846 A/Chile/95/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287838 A/Chile/88/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287830 A/Chile/56/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI287782 A/Chile/28/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI285556 A/Thailand/CU-H910/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI285516 A/Thailand/CU-C161/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI283026 A/San Diego/WR1640P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI283018 A/San Diego/WR1639P/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI282862 A/Athens/WRAIR2962N/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI282396 A/Managua/5401.01/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI282340 A/Managua/4407.02/2009 (A/H1N1) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI277680 A/California/WR1313P/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI277468 A/New York/NHRC0004/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI277460 A/New York/NHRC0003/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI274992 A/Japan/NHRC0003/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI274984 A/Guam/NHRC0028/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI274960 A/Guam/NHRC0025/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI273591 A/West Virginia/01/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI272813 A/Kurume/K0910/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI271266 A/Bochum/INS249/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI271154 A/Antwerp/INS221/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI269362 A/Japan/NHRC0002/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267948 A/British Columbia/GFA0401/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267519 A/ENG/430/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267367 A/ENG/634/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267359 A/ENG/92860032/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267343 A/ENG/223/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267271 A/ENG/259/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267263 A/ENG/XFL00418/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267223 A/SC/10/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI267171 A/Boston/136/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266981 A/Mexico City/023/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266973 A/Mexico City/022/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266965 A/Mexico City/021/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266957 A/Mexico City/020/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266949 A/Mexico City/019/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI266703 A/Boston/137/2009 (A/H1N1 pdm09) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)

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PostPosted: Sun Dec 04, 2011 7:51 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
HA matches at GISAID

EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI316991 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1688/1701 (99%)
EPI316990 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1688/1701 (99%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2959.5 0.000000e+00 1668/1701 (98%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2953.9 0.000000e+00 1667/1701 (98%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2953.9 0.000000e+00 1667/1701 (98%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2942.8 0.000000e+00 1665/1701 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2920.7 0.000000e+00 1661/1701 (97%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2915.1 0.000000e+00 1660/1701 (97%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2915.1 0.000000e+00 1661/1702 (97%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2902.2 0.000000e+00 1649/1688 (97%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1655/1701 (97%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1655/1701 (97%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2885.6 0.000000e+00 1646/1688 (97%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1644/1686 (97%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1653/1701 (97%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1653/1701 (97%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1653/1701 (97%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1652/1701 (97%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1652/1701 (97%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2867.1 0.000000e+00 1652/1702 (97%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1651/1702 (97%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1644/1692 (97%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1651/1702 (97%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1649/1701 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1650/1702 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1647/1701 (96%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1648/1702 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1646/1701 (96%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1647/1702 (96%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1647/1702 (96%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1644/1701 (96%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1644/1702 (96%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1643/1702 (96%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1643/1702 (96%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1641/1701 (96%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2806.2 0.000000e+00 1640/1700 (96%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1639/1701 (96%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1639/1701 (96%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1639/1701 (96%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1639/1701 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2795.1 0.000000e+00 1639/1701 (96%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1638/1701 (96%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1638/1701 (96%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1639/1702 (96%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1637/1701 (96%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1631/1692 (96%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1637/1701 (96%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1637/1701 (96%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1638/1702 (96%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1638/1702 (96%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1636/1701 (96%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1639/1704 (96%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 2778.5 0.000000e+00 1635/1701 (96%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2778.5 0.000000e+00 1637/1703 (96%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1636/1702 (96%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1636/1702 (96%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 2772.9 0.000000e+00 1635/1702 (96%)
EPI318101 A/swine/Iowa/A01049160/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI317007 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1701 (96%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1701 (96%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 2769.2 0.000000e+00 1617/1676 (96%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 2767.4 0.000000e+00 1635/1703 (96%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI307945 A/swine/Illinois/A01057088/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI219368 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1636/1704 (96%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)

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PostPosted: Sun Dec 04, 2011 8:05 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
NP matches at GISAID

EPI312690 A/swine/Minnesota/239105/2009 (A/H3N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI324360 A/California/VRDL353/2009 (A/H0) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323712 A/England/H093780041/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323668 A/England/950/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323640 A/England/859/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323616 A/England/451/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323613 A/England/450/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323610 A/England/446/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323595 A/England/429/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323592 A/England/424/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323586 A/England/416/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323577 A/Ireland/4/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323571 A/Ireland/10/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323567 A/Ireland/7/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323527 A/England/366/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323515 A/Scotland/8/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323487 A/England/346/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323471 A/England/341/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI323455 A/Ireland/1/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI318427 A/Netherlands/2631c/2010 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI315606 A/Managua/3246.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI315598 A/Managua/5708.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI315550 A/Boston/680/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI315446 A/Boston/630/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI315438 A/Boston/618/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI312989 A/New York/3565/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI312749 A/New York/3251/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI312747 A/New York/3250/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI312742 A/New York/3217/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI312736 A/New York/3198/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI309338 A/Cambodia/NHRCC00001/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI309325 A/Cambodia/NHRCC00002/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI309311 A/Cambodia/NHRCC00006/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI309303 A/Cambodia/NHRCC00003/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI309126 A/New York/6902/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308639 A/Madrid/INS112/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308587 A/San Diego/INS41/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308573 A/District of Columbia/INS22/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308510 A/Lima/WRAIR8511F/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308462 A/Piura/WRAIR1694P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308374 A/San Diego/WRAIR1666P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308350 A/San Diego/WRAIR1663P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308342 A/San Diego/WRAIR1662P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308318 A/San Diego/WRAIR1658P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308222 A/San Diego/WRAIR1642P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308198 A/Guam/WRAIR1510P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308190 A/California/WRAIR1507P/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308086 A/Quito/WRAIR0617T/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308078 A/Piura/WRAIR0603F/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308070 A/Lima/WRAIR0519F/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308054 A/Bogota/WRAIR0440T/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI308022 A/Lima/WRAIR0285F/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI307790 A/Cambodia/NHRCC00008/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI307782 A/Cambodia/NHRCC00007/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI307766 A/Cambodia/NHRCC00005/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI307758 A/Cambodia/NHRCC00004/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300671 A/Argentina/HNRG84/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300664 A/Argentina/HNRG83/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300643 A/Argentina/HNRG5/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300635 A/Argentina/HNRG45/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300625 A/Argentina/HNRG36/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300615 A/Argentina/HNRG32/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300605 A/Argentina/HNRG21/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300595 A/Argentina/HNRG14/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300588 A/Argentina/HNRG107/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300574 A/Argentina/HNRG105/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI300567 A/Argentina/HNRG104/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI296157 A/Hamburg/NY1580/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288349 A/Boston/617/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288333 A/Boston/703/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288309 A/Boston/682/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288253 A/Boston/653/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288245 A/Boston/648/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288237 A/Boston/634/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288076 A/Chile/3586/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288052 A/Chile/3375/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI288044 A/Chile/3369/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI287996 A/Chile/3220/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI285534 A/Thailand/CU-H567/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI285518 A/Thailand/CU-C161/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI284429 A/Singapore/591/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282864 A/Athens/WRAIR2962N/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282736 A/Mexico City/WRAIR1773T/2010 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282635 A/Hong Kong/WRAIR0114T/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282627 A/Hong Kong/WRAIR0113N/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282538 A/Managua/4063.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282498 A/Managua/12.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282330 A/Managua/3359.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282274 A/Managua/2339.03/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI282266 A/Managua/4570.01/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI281946 A/Newark/INS319/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI281898 A/Warsaw/INS313/2009 (A/H1N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI280970 A/Korea/CJ112/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI280966 A/Korea/CJ40/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI280963 A/Korea/CJ15/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI280962 A/Korea/CJ09/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI280961 A/Korea/CJ04/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI277946 A/Mexico City/WR1701T/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI277794 A/Amman/WR1335T/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI277786 A/South Carolina/WR1326P/2009 (A/H1N1 pdm09) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)

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PostPosted: Sun Dec 04, 2011 8:11 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
NA matches at GISAID

EPI312691 A/swine/Minnesota/239105/2009 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI317014 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI317013 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI103158 A/swine/British Columbia/28103/2005 (A/H3N2) segment 6 (NA) 2453.5 0.000000e+00 1382/1409 (98%)
EPI337547 A/swine/Minnesota/00484/2005 (A/H3N2) segment 6 (NA) 2449.8 0.000000e+00 1382/1410 (98%)
EPI337443 A/swine/Minnesota/00611/2005 (A/H3N2) segment 6 (NA) 2449.8 0.000000e+00 1382/1410 (98%)
EPI182818 A/swine/Quebec/4001/2005 (A/H3N2) segment 6 (NA) 2444.2 0.000000e+00 1381/1410 (97%)
EPI337386 A/swine/Nebraska/00722/2005 (A/H0) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI314333 A/turkey/BC/1529-3/2005 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1381/1411 (97%)
EPI229374 A/turkey/OH/313053/2004 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI103194 A/swine/Ontario/33853/2005 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI103122 A/Ontario/RV1273/2005 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI101393 A/turkey/Ohio/313053/04 (A/H3N2) segment 6 (NA) 2438.7 0.000000e+00 1380/1410 (97%)
EPI337351 A/swine/Minnesota/01146/2006 (A/H3N2) segment 6 (NA) 2433.2 0.000000e+00 1379/1410 (97%)
EPI103212 A/turkey/Ontario/31232/2005 (A/H3N2) segment 6 (NA) 2431.3 0.000000e+00 1378/1409 (97%)
EPI337952 A/swine/Illinois/02450/2008 (A/H0) segment 6 (NA) 2422.1 0.000000e+00 1377/1410 (97%)
EPI235273 A/swine/North Carolina/2003 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI228924 A/turkey/Illinois/2004 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI227576 A/turkey/NC/353568/2005 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI103176 A/swine/Manitoba/12707/2005 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI337343 A/swine/Iowa/01700/2007 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI158878 A/turkey/MN/366767/2005 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI103140 A/swine/Alberta/14722/2005 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI337364 A/swine/Minnesota/00709/2005 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI222653 A/swine/Minnesota/1145/2007 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI182825 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1375/1412 (97%)
EPI168647 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI168652 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 6 (NA) 2394.4 0.000000e+00 1372/1410 (97%)
EPI225755 A/swine/Minnesota/66853/2006 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI222956 A/swine/Minnesota/1300/2007 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI128349 A/Ontario/1252/2007 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1371/1410 (97%)
EPI225752 A/swine/Minnesota/65767/2006 (A/H3N2) segment 6 (NA) 2383.3 0.000000e+00 1370/1410 (97%)
EPI320551 A/Illinois/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234920 A/Texas/78/2003 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234912 A/Texas/152/2003 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234908 A/Texas/133/2003 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234907 A/Texas/132/2003 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234836 A/New York/1/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234813 A/Nebraska/18/2003 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI228953 A/Illinois/03/2004 (A/H0N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI225757 A/swine/Minnesota/66960/2006 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1370/1411 (97%)
EPI222962 A/swine/Minnesota/761/2007 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI222676 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI139366 A/Denmark/04/2004 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI139315 A/Denmark/4/2002 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI139304 A/Denmark/01/2002 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI94511 A/Canterbury/102/2002 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI94378 A/Canterbury/56/2002 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI93257 A/Canterbury/443/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI93200 A/Canterbury/440/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI93048 A/Canterbury/431/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI92497 A/Canterbury/386/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI81672 A/Oklahoma/323/03 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI79659 A/New York/272/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI53579 A/New York/37/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI52648 A/New York/13/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI28707 A/New York/479/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI27287 A/New York/43/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI27230 A/New York/40/2003 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI26964 A/New York/33/2004 (A/H3N2) segment 6 (NA) 2377.8 0.000000e+00 1369/1410 (97%)
EPI234914 A/Texas/29/2003 (A/H0N2) segment 6 (NA) 2374.1 0.000000e+00 1368/1410 (97%)
EPI337531 A/swine/Minnesota/001332/2006 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI320559 A/Illinois/NHRC0001/2004 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI320311 A/Australia/NHRC0005/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI320283 A/Missouri/NHRC0002/2004 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI319018 A/California/NHRC0006/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318858 A/Australia/NHRC0002/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318850 A/Australia/NHRC0003/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318842 A/Australia/NHRC0006/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318834 A/Australia/NHRC0008/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318826 A/Australia/NHRC0009/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318762 A/Australia/NHRC0010/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318746 A/Australia/NHRC0004/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318738 A/Australia/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318658 A/Missouri/NHRC0001/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318522 A/Texas/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318498 A/Missouri/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI318490 A/South Carolina/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI242140 A/X-141(Puerto Rico/8/1934-Panama/2007/1999) (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234918 A/Texas/41/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234917 A/Texas/40e/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234910 A/Texas/141e/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234909 A/Texas/140e/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234896 A/South Dakota/19/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234869 A/Oklahoma/8/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI234868 A/Oklahoma/7/2003 (A/H0N2) segment 6 (NA) 2372.2 0.000000e+00 1369/1411 (97%)
EPI96281 A/Canterbury/425/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95749 A/Canterbury/64/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95673 A/Canterbury/15/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95635 A/Canterbury/09/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95081 A/Canterbury/46/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95043 A/Canterbury/13/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI95024 A/Canterbury/04/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94853 A/Canterbury/66/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94834 A/Canterbury/58/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94815 A/Canterbury/44/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94796 A/South Canterbury/37/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94682 A/Canterbury/20/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94644 A/Canterbury/14/2002 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI94587 A/Canterbury/409/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)

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PostPosted: Sun Dec 04, 2011 8:16 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27294
Location: Pittsburgh, PA USA
MP matches at GISAID

EPI312692 A/swine/Minnesota/239105/2009 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI342615 A/West Virginia/11/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338782 A/canine/Beijing/cau2/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338780 A/canine/Beijing/cau9/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI336772 A/Philippines/TMC09-197/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI336754 A/swine/Alberta/25/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI333453 A/South Carolina/WRAIR1645P/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332854 A/Mum/NIV5442/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332716 A/Phiippines/TMC09-193/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332715 A/Phiippines/TMC10-99/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332709 A/Phiippines/TMC09-280/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332340 A/North Fitzroy/INS476/2010 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI331310 A/PHILIPPINES/3334/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI330327 A/Guangdong-Xinxing/SWL198/2011 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324956 A/Paris/1156/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324953 A/Paris/7976/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324950 A/Paris/7975/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324947 A/Paris/7974/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324944 A/Paris/7973/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324941 A/Paris/7154/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324730 A/Sydney/DD3-27/2010 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324369 A/California/VRDL364/2009 (A/H0) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324357 A/California/VRDL353/2009 (A/H0) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324191 A/swine/MB/25-3/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324140 A/SW/SK/59-6/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323718 A/England/H093780034/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323714 A/England/H093780041/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323686 A/England/1213/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323682 A/England/H094220579/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323678 A/England/H094240645/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323674 A/England/1116/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323670 A/England/950/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323666 A/England/898/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323662 A/England/902/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323650 A/England/854/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323646 A/England/900/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323642 A/England/859/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323630 A/England/876/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323626 A/England/865/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI323622 A/England/857/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320819 A/Philippines/TMC09_248/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320818 A/Philippines/TMC09_245/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320817 A/Philippines/TMC09_222/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320816 A/Philippines/TMC09_218/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320814 A/Philippines/TMC09_140/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320813 A/Philippines/TMC09_123/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320519 A/Hangzhou/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320510 A/Hangzhou/1733/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320509 A/Hangzhou/1732/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320506 A/Hangzhou/1724/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320494 A/Hangzhou/1708/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320493 A/Hangzhou/1693/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320491 A/Hangzhou/157/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320488 A/Hangzhou/156/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320487 A/Hangzhou/15/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320483 A/Hangzhou/129/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320479 A/Hangzhou/124/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320476 A/Hangzhou/117/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320475 A/Hangzhou/115/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320296 A/Australia/17/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320215 A/Lille/7367/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320211 A/Rouen/7208/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320207 A/Metz/7105/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320203 A/Tours/7097/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320201 A/Rouen/6934/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320199 A/Rouen/6928/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320195 A/Paris/6074/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI320187 A/Paris/5501/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317176 A/Morocco/93/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317167 A/Morocco/22/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317159 A/Morocco/889/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317150 A/Morocco/671/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317131 A/Morocco/1598/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317125 A/Morocco/606/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI317050 A/Managua/4877.02/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI316934 A/Morocco/11/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI316634 A/Boston/107/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315682 A/Korea/NAP-1/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315572 A/Boston/686/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315556 A/Boston/683/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315540 A/Boston/678/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315532 A/Boston/673/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315524 A/Boston/671/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315516 A/Boston/670/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315508 A/Boston/667/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315484 A/Boston/650/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315476 A/Boston/637/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315468 A/Boston/635/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315460 A/Boston/633/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315420 A/Boston/593/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313335 A/Texas/JMS368/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313299 A/Odense/INS176/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313188 A/Frankfurt/INS93/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313144 A/Boston/705/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313136 A/Boston/702/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI313108 A/Athens/INS152/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312985 A/New York/3256/2009 (A/H0N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312748 A/New York/3251/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312741 A/New York/3217/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312734 A/New York/3198/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)

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