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PostPosted: Thu Dec 01, 2011 6:04 am 
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Posts: 27558
Location: Pittsburgh, PA USA
Another series of 2011 swine sequences (Kansas and Illinois) has been released by Kansas State University at Genbank.

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PostPosted: Thu Dec 01, 2011 6:04 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
JN652501 Swine 4 H1N2 USA 2011/04/19 1698 Influenza A virus (A/swine/Illinois/A01049871/2011(H1N2)) yes
JN652534 Swine 6 H1N2 USA 2011/04/19 1410 Influenza A virus (A/swine/Illinois/A01049871/2011(H1N2)) yes
JN652569 Swine 7 H1N2 USA 2011/04/19 982 Influenza A virus (A/swine/Illinois/A01049871/2011(H1N2)) yes
JN652502 Swine 4 H1N2 USA 2011/04/19 1698 Influenza A virus (A/swine/Illinois/A01049872/2011(H1N2)) yes
JN652535 Swine 6 H1N2 USA 2011/04/19 1410 Influenza A virus (A/swine/Illinois/A01049872/2011(H1N2)) yes
JN652570 Swine 7 H1N2 USA 2011/04/19 982 Influenza A virus (A/swine/Illinois/A01049872/2011(H1N2)) yes
JN652506 Swine 4 H1N1 USA 2011/04/27 1701 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) yes
JN652540 Swine 6 H1N1 USA 2011/04/27 1410 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) yes
JN652575 Swine 7 H1N1 USA 2011/04/27 982 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) yes
JN409388 Swine 1 H3N2 USA 2010/12/30 2280 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409389 Swine 2 H3N2 USA 2010/12/30 2274 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409390 Swine 3 H3N2 USA 2010/12/30 2151 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409391 Swine 4 H3N2 USA 2010/12/30 1701 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409392 Swine 5 H3N2 USA 2010/12/30 1497 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409393 Swine 6 H3N2 USA 2010/12/30 1410 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409394 Swine 7 H3N2 USA 2010/12/30 982 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409395 Swine 8 H3N2 USA 2010/12/30 838 Influenza A virus (A/swine/Kansas/10-91088/2010(H3N2)) yes
JN409396 Swine 1 H3N2 USA 2011/01/19 2280 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409397 Swine 2 H3N2 USA 2011/01/19 2274 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409398 Swine 3 H3N2 USA 2011/01/19 2151 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409399 Swine 4 H3N2 USA 2011/01/19 1701 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409400 Swine 5 H3N2 USA 2011/01/19 1497 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409401 Swine 6 H3N2 USA 2011/01/19 1410 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409402 Swine 7 H3N2 USA 2011/01/19 982 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409403 Swine 8 H3N2 USA 2011/01/19 838 Influenza A virus (A/swine/Kansas/11-101926/2011(H3N2)) yes
JN409404 Swine 1 H3N2 USA 2011/02/16 2280 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409405 Swine 2 H3N2 USA 2011/02/16 2274 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409406 Swine 3 H3N2 USA 2011/02/16 2151 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409407 Swine 4 H3N2 USA 2011/02/16 1701 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409408 Swine 5 H3N2 USA 2011/02/16 1497 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409409 Swine 6 H3N2 USA 2011/02/16 1410 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409410 Swine 7 H3N2 USA 2011/02/16 982 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409411 Swine 8 H3N2 USA 2011/02/16 838 Influenza A virus (A/swine/Kansas/11-104465/2011(H3N2)) yes
JN409412 Swine 1 H3N2 USA 2011/02/16 2280 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409413 Swine 2 H3N2 USA 2011/02/16 2274 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409414 Swine 3 H3N2 USA 2011/02/16 2151 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409415 Swine 4 H3N2 USA 2011/02/16 1701 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409416 Swine 5 H3N2 USA 2011/02/16 1497 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409417 Swine 6 H3N2 USA 2011/02/16 1410 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409418 Swine 7 H3N2 USA 2011/02/16 982 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409419 Swine 8 H3N2 USA 2011/02/16 838 Influenza A virus (A/swine/Kansas/11-104467/2011(H3N2)) yes
JN409420 Swine 1 H3N2 USA 2011/03/18 2280 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409421 Swine 2 H3N2 USA 2011/03/18 2274 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409422 Swine 3 H3N2 USA 2011/03/18 2151 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409423 Swine 4 H3N2 USA 2011/03/18 1701 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409424 Swine 5 H3N2 USA 2011/03/18 1497 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409425 Swine 6 H3N2 USA 2011/03/18 1410 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409426 Swine 7 H3N2 USA 2011/03/18 982 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409427 Swine 8 H3N2 USA 2011/03/18 838 Influenza A virus (A/swine/Kansas/11-107824/2011(H3N2)) yes
JN409428 Swine 1 H3N2 USA 2011/04/02 2280 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409429 Swine 2 H3N2 USA 2011/04/02 2274 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409430 Swine 3 H3N2 USA 2011/04/02 2151 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409431 Swine 4 H3N2 USA 2011/04/02 1701 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409432 Swine 5 H3N2 USA 2011/04/02 1497 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409433 Swine 6 H3N2 USA 2011/04/02 1410 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409434 Swine 7 H3N2 USA 2011/04/02 982 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409435 Swine 8 H3N2 USA 2011/04/02 838 Influenza A virus (A/swine/Kansas/11-109700/2011(H3N2)) yes
JN409436 Swine 1 H3N2 USA 2011/04/08 2280 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409437 Swine 2 H3N2 USA 2011/04/08 2274 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409438 Swine 3 H3N2 USA 2011/04/08 2151 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409439 Swine 4 H3N2 USA 2011/04/08 1701 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409440 Swine 5 H3N2 USA 2011/04/08 1497 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409441 Swine 6 H3N2 USA 2011/04/08 1410 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409442 Swine 7 H3N2 USA 2011/04/08 982 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes
JN409443 Swine 8 H3N2 USA 2011/04/08 838 Influenza A virus (A/swine/Kansas/11-110529/2011(H3N2)) yes

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PostPosted: Thu Dec 01, 2011 7:00 am 
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Posts: 27558
Location: Pittsburgh, PA USA
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

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PostPosted: Thu Dec 01, 2011 7:04 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI338532 A/swine/Iowa/A01049750/2011 (A/H3N2) segment 7 (MP) 1391.6 0.000000e+00 758/760 (99%)
EPI338520 A/swine/Texas/A01049914/2011 (A/H3N2) segment 7 (MP) 1386.1 0.000000e+00 757/760 (99%)
EPI338519 A/swine/Texas/A01049915/2011 (A/H3N2) segment 7 (MP) 1386.1 0.000000e+00 757/760 (99%)
EPI338495 A/swine/Texas/A01049555/2011 (A/H3N2) segment 7 (MP) 1386.1 0.000000e+00 757/760 (99%)
EPI245357 A/District of Columbia/INS25/2009 (A/H1N1 pdm09) segment 7 (MP) 1386.1 0.000000e+00 757/760 (99%)
EPI215663 A/PORT MORESBY/2001/2009 (A/H1N1 pdm09) segment 7 (MP) 1386.1 0.000000e+00 757/760 (99%)
EPI342615 A/West Virginia/11/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI341735 A/swine/Iowa/A01049980/2011 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI341734 A/swine/Illinois/A01049981/2011 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI341725 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338782 A/canine/Beijing/cau2/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338780 A/canine/Beijing/cau9/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338524 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338523 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338521 A/swine/Iowa/A01049894/2011 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338494 A/swine/Texas/A01049556/2011 (A/H3N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338484 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI338476 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI336772 A/Philippines/TMC09-197/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI336754 A/swine/Alberta/25/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI333453 A/South Carolina/WRAIR1645P/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332897 A/Pune/NIV10278/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332854 A/Mum/NIV5442/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332716 A/Phiippines/TMC09-193/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332715 A/Phiippines/TMC10-99/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332709 A/Phiippines/TMC09-280/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI332340 A/North Fitzroy/INS476/2010 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI331675 A/SINGAPORE/587/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI331337 A/PERTH/345/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI331310 A/PHILIPPINES/3334/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI330327 A/Guangdong-Xinxing/SWL198/2011 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324956 A/Paris/1156/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324953 A/Paris/7976/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324950 A/Paris/7975/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324947 A/Paris/7974/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324944 A/Paris/7973/2010 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324941 A/Paris/7154/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324839 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324730 A/Sydney/DD3-27/2010 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324369 A/California/VRDL364/2009 (A/H0) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324357 A/California/VRDL353/2009 (A/H0) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324247 A/swine/QC/3974-5/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324191 A/swine/MB/25-3/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI324140 A/SW/SK/59-6/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323718 A/England/H093780034/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323714 A/England/H093780041/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323702 A/England/798/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323686 A/England/1213/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323682 A/England/H094220579/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323678 A/England/H094240645/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323674 A/England/1116/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323670 A/England/950/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323666 A/England/898/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323662 A/England/902/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323650 A/England/854/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323646 A/England/900/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323642 A/England/859/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323634 A/England/1111/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323630 A/England/876/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323626 A/England/865/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323622 A/England/857/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323618 A/England/451/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323428 A/England/450/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323427 A/England/446/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323424 A/England/435/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323422 A/England/429/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323421 A/England/424/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323420 A/England/421/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323419 A/England/416/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323418 A/England/415/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323416 A/Ireland/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323415 A/Ireland/3/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323414 A/Ireland/10/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323413 A/Ireland/7/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323412 A/Ireland/2/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323409 A/England/393/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323406 A/England/380/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323403 A/England/366/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323400 A/Scotland/8/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323393 A/England/346/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323391 A/England/343/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323389 A/England/341/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323385 A/Ireland/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI323384 A/England/303/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI321140 A/Sydney/DD3-37/2010 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI321092 A/Sydney/DD3-29/2010 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320932 A/Sydney/DD3-03/2010 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320819 A/Philippines/TMC09_248/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320818 A/Philippines/TMC09_245/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320817 A/Philippines/TMC09_222/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320816 A/Philippines/TMC09_218/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320814 A/Philippines/TMC09_140/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320813 A/Philippines/TMC09_123/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320708 A/Nanchang/8011/2009 (A/H1N1) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320673 A/Hangzhou/3/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320519 A/Hangzhou/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320510 A/Hangzhou/1733/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320509 A/Hangzhou/1732/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320506 A/Hangzhou/1724/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)
EPI320498 A/Hangzhou/1715/2009 (A/H1N1 pdm09) segment 7 (MP) 1380.6 0.000000e+00 756/760 (99%)

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PostPosted: Thu Dec 01, 2011 7:12 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI338545 A/swine/Texas/A01049915/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI338428 A/swine/Texas/A01049555/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI338560 A/swine/Iowa/A01049750/2011 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI338427 A/swine/Texas/A01049556/2011 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI338546 A/swine/Texas/A01049914/2011 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1688/1701 (99%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1647/1701 (96%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1646/1701 (96%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1646/1701 (96%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1642/1701 (96%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1642/1701 (96%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1641/1701 (96%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1641/1701 (96%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1637/1701 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1636/1701 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2782.2 0.000000e+00 1636/1701 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1636/1701 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1636/1702 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2769.2 0.000000e+00 1626/1689 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1631/1701 (95%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1632/1702 (95%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2752.6 0.000000e+00 1623/1689 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2750.8 0.000000e+00 1622/1688 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2750.8 0.000000e+00 1631/1702 (95%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1626/1694 (95%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1631/1703 (95%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1629/1702 (95%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1629/1702 (95%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1629/1702 (95%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1628/1702 (95%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1627/1702 (95%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1627/1702 (95%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1626/1702 (95%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1625/1701 (95%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1626/1702 (95%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2717.5 0.000000e+00 1625/1701 (95%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1626/1703 (95%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1626/1703 (95%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1625/1702 (95%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2704.6 0.000000e+00 1624/1703 (95%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2704.6 0.000000e+00 1624/1703 (95%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2704.6 0.000000e+00 1624/1703 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2699.1 0.000000e+00 1623/1703 (95%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2693.5 0.000000e+00 1622/1703 (95%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 2693.5 0.000000e+00 1623/1704 (95%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2693.5 0.000000e+00 1623/1704 (95%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2693.5 0.000000e+00 1622/1703 (95%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2688.0 0.000000e+00 1620/1702 (95%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2688.0 0.000000e+00 1621/1703 (95%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 2682.5 0.000000e+00 1621/1704 (95%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 2682.5 0.000000e+00 1621/1704 (95%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2682.5 0.000000e+00 1620/1703 (95%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2682.5 0.000000e+00 1618/1701 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2676.9 0.000000e+00 1614/1695 (95%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 2676.9 0.000000e+00 1620/1704 (95%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 2676.9 0.000000e+00 1620/1704 (95%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2676.9 0.000000e+00 1619/1703 (95%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2676.9 0.000000e+00 1619/1703 (95%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 2673.2 0.000000e+00 1617/1702 (95%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2671.4 0.000000e+00 1617/1702 (95%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2671.4 0.000000e+00 1617/1702 (95%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2671.4 0.000000e+00 1617/1702 (95%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2671.4 0.000000e+00 1618/1703 (95%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 2667.7 0.000000e+00 1618/1704 (94%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2667.7 0.000000e+00 1618/1704 (94%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2667.7 0.000000e+00 1615/1700 (95%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1618/1704 (94%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1618/1704 (94%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1618/1704 (94%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1617/1703 (94%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1617/1703 (94%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1616/1702 (94%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2665.8 0.000000e+00 1618/1704 (94%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 2660.3 0.000000e+00 1617/1704 (94%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 2660.3 0.000000e+00 1617/1704 (94%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 2660.3 0.000000e+00 1615/1702 (94%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2660.3 0.000000e+00 1615/1702 (94%)
EPI98686 A/swine/Minnesota/00395/2004 (A/H3N1) segment 4 (HA) 2660.3 0.000000e+00 1615/1702 (94%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 2656.6 0.000000e+00 1616/1704 (94%)
EPI335253 A/swine/Quebec/1267568/2010 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1607/1692 (94%)
EPI316991 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1615/1703 (94%)
EPI316990 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1615/1703 (94%)
EPI307945 A/swine/Illinois/A01057088/2010 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1615/1703 (94%)
EPI302659 A/swine/Illinois/53612-6/2010 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1614/1702 (94%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2654.8 0.000000e+00 1614/1702 (94%)

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PostPosted: Thu Dec 01, 2011 7:13 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI338595 A/swine/Iowa/A01049750/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338457 A/swine/Texas/A01049555/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338456 A/swine/Texas/A01049556/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338578 A/swine/Texas/A01049914/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338577 A/swine/Texas/A01049915/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI220918 A/swine/Texas/008648/2008 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1390/1410 (98%)
EPI281238 A/swine/Texas/01976/2008 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1387/1410 (98%)
EPI222684 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 6 (NA) 2444.2 0.000000e+00 1381/1410 (97%)
EPI8035 A/Swine/Oklahoma/18089/99 (A/H3N2) segment 6 (NA) 2207.9 0.000000e+00 1327/1393 (95%)
EPI7569 A/Swine/Iowa/533/99 (A/H3N2) segment 6 (NA) 2206.0 0.000000e+00 1338/1410 (94%)
EPI7552 A/Swine/Nebraska/209/98 (A/H3N2) segment 6 (NA) 2206.0 0.000000e+00 1338/1410 (94%)
EPI8027 A/Swine/Oklahoma/18717/99 (A/H3N2) segment 6 (NA) 2204.2 0.000000e+00 1327/1394 (95%)
EPI8025 A/Swine/Illinois/21587/99 (A/H3N2) segment 6 (NA) 2200.5 0.000000e+00 1325/1392 (95%)
EPI327285 A/swine/Texas/4199-2/1998 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1337/1411 (94%)
EPI184473 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1337/1411 (94%)
EPI184467 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1337/1411 (94%)
EPI184461 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1337/1411 (94%)
EPI184455 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1337/1411 (94%)
EPI7603 A/Swine/Minnesota/593/99 (A/H3N2) segment 6 (NA) 2194.9 0.000000e+00 1336/1410 (94%)
EPI33152 A/New York/555/1996 (A/H3N2) segment 6 (NA) 2183.9 0.000000e+00 1335/1411 (94%)
EPI30075 A/New York/573/1996 (A/H3N2) segment 6 (NA) 2183.9 0.000000e+00 1335/1411 (94%)
EPI8029 A/Swine/Wisconsin/14094/99 (A/H3N2) segment 6 (NA) 2183.9 0.000000e+00 1316/1383 (95%)
EPI117742 A/Athens/23/97 (A/H3N2) segment 6 (NA) 2178.3 0.000000e+00 1334/1411 (94%)
EPI14568 A/Turkey/MO/24093/99 (A/H1N2) segment 6 (NA) 2178.3 0.000000e+00 1334/1411 (94%)
EPI7586 A/Swine/Iowa/569/99 (A/H3N2) segment 6 (NA) 2178.3 0.000000e+00 1333/1410 (94%)
EPI333229 A/X-133(X-31B-Shenzhen/227/1995) (A/H3N2) segment 6 (NA) 2172.8 0.000000e+00 1333/1411 (94%)
EPI31328 A/New York/591/1996 (A/H3N2) segment 6 (NA) 2172.8 0.000000e+00 1334/1412 (94%)
EPI31271 A/New York/563/1996 (A/H3N2) segment 6 (NA) 2172.8 0.000000e+00 1333/1411 (94%)
EPI17869 A/duck/NC/91347/01 (A/H1N2) segment 6 (NA) 2172.8 0.000000e+00 1333/1411 (94%)
EPI11239 A/Buenos Aires/4459/96 (A/H3N2) segment 6 (NA) 2172.8 0.000000e+00 1333/1411 (94%)
EPI4270 A/Shiga/25/97 (A/H3N2) segment 6 (NA) 2172.8 0.000000e+00 1333/1411 (94%)
EPI9379 A/Swine/Indiana/P12439/00 (A/H1N2) segment 6 (NA) 2170.9 0.000000e+00 1331/1409 (94%)
EPI171183 A/Siena/1/1997 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1332/1411 (94%)
EPI161233 A/Hong Kong/CUHK10100/1999 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI37928 A/New York/554/1996 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI34166 A/New York/557/1996 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI32715 A/New York/603/1996 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI31290 A/New York/567/1996 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI11245 A/Buenos Aires/32/96 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1332/1411 (94%)
EPI11241 A/Buenos Aires/4559/96 (A/H3N2) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%)
EPI164039 A/swine/Korea/CY09/2007 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI161426 A/Hong Kong/CUHK4245/1997 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI117754 A/Victoria/69/1997 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1333/1413 (94%)
EPI117730 A/Moscow/41/1997 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI117696 A/Bur/23/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI78253 A/New York/277/1999 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI36389 A/New York/556/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI34565 A/New York/577/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI34546 A/New York/571/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI31404 A/New York/596/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI30568 A/New York/586/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI30056 A/New York/570/1996 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1332/1412 (94%)
EPI30037 A/New York/569/1997 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI12683 A/South Africa/1147/96 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI11757 A/human/Montreal/MTL63149/00 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI11243 A/Buenos Aires/4634/96 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1331/1411 (94%)
EPI5819 A/Swine/Minnesota/9088-2/98 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1315/1387 (94%)
EPI5817 A/Swine/Texas/4199-2/98 (A/H3N2) segment 6 (NA) 2161.7 0.000000e+00 1315/1387 (94%)
EPI8033 A/Swine/NorthCarolina/16497/99 (A/H3N2) segment 6 (NA) 2158.0 0.000000e+00 1315/1388 (94%)
EPI336014 A/Thailand/Siriraj-08/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI242116 A/X-119(Puerto Rico/8/1934-Harbin/15/1992) (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI161434 A/Hong Kong/CUHK4622/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI161420 A/Hong Kong/CUHK41222/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI161267 A/Hong Kong/CUHK12626/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI161249 A/Hong Kong/CUHK10960/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI161247 A/Hong Kong/CUHK10954/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI161242 A/Hong Kong/CUHK10554/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI117760 A/Brazil/97/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI117708 A/Turkey/419/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI95445 A/New York/502/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91794 A/New York/547/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91623 A/New York/532/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI91604 A/New York/531/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91566 A/New York/525/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91547 A/New York/524/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91414 A/New York/516/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI91357 A/New York/501/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI90977 A/New York/517/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI90939 A/New York/513/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI90920 A/New York/511/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI90901 A/New York/510/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI90882 A/New York/508/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI90844 A/New York/503/1997 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI79184 A/New York/283/1999 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI44162 A/New York/601/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI36408 A/New York/598/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI34185 A/New York/559/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI32677 A/New York/578/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI31385 A/New York/595/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1329/1409 (94%)
EPI31309 A/New York/582/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1328/1408 (94%)
EPI30625 A/New York/589/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI30606 A/New York/588/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI30454 A/New York/568/1996 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI28840 A/New York/549/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI28726 A/New York/504/1998 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)
EPI12677 A/Sichuan/346/98 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI11753 A/human/Montreal/MTL63816/00 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1332/1413 (94%)
EPI11225 A/Montevideo/2775/98 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI11219 A/Tucuman/V694/98 (A/H3N2) segment 6 (NA) 2156.2 0.000000e+00 1331/1412 (94%)
EPI9377 A/Swine/Iowa/930/01 (A/H1N2) segment 6 (NA) 2156.2 0.000000e+00 1330/1411 (94%)

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PostPosted: Thu Dec 01, 2011 7:15 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI220768 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)
EPI220776 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)
EPI220896 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220888 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220864 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220848 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220840 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220808 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220800 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220792 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI220880 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%)
EPI220872 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%)
EPI220856 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 1 (PB2) 4028.7 0.000000e+00 2247/2280 (98%)
EPI220904 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 1 (PB2) 4023.1 0.000000e+00 2246/2280 (98%)
EPI220921 A/swine/Texas/050593/2008 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2243/2280 (98%)
EPI220929 A/swine/Texas/050625/2008 (A/H1N2) segment 1 (PB2) 4001.0 0.000000e+00 2242/2280 (98%)
EPI337480 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI281308 A/swine/Iowa/02039/2008 (A/H1N2) segment 1 (PB2) 3912.3 0.000000e+00 2224/2277 (97%)
EPI337512 A/swine/Minnesota/02324/2008 (A/H1N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI337369 A/swine/Minnesota/00709/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI281298 A/swine/Texas/01976/2008 (A/H1N2) segment 1 (PB2) 3851.4 0.000000e+00 2213/2277 (97%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3844.0 0.000000e+00 2213/2279 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2212/2279 (97%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3827.4 0.000000e+00 2210/2279 (96%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2206/2274 (97%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2208/2277 (96%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI323205 A/swine/Minnesota/65767/2006 (A/H3N2) segment 1 (PB2) 3821.8 0.000000e+00 2210/2280 (96%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 3821.8 0.000000e+00 2206/2275 (96%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%)
EPI337520 A/swine/Minnesota/001444/2007 (A/H3N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2207/2278 (96%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3810.8 0.000000e+00 2208/2280 (96%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2201/2271 (96%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2201/2271 (96%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3805.2 0.000000e+00 2193/2259 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3803.4 0.000000e+00 2187/2251 (97%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI337382 A/swine/Minnesota/001200/2006 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI281299 A/swine/Iowa/02096/2008 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2204/2277 (96%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%)
EPI337424 A/swine/Minnesota/02053/2008 (A/H1N1) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%)
EPI291833 A/Minnesota/03/2008 (A/H1N1) segment 1 (PB2) 3794.1 0.000000e+00 2203/2277 (96%)
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 3792.3 0.000000e+00 2195/2266 (96%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI281309 A/swine/Minnesota/02053/2008 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2203/2278 (96%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI182830 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI166272 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 1 (PB2) 3790.4 0.000000e+00 2186/2253 (97%)
EPI128360 A/Ontario/1252/2007 (A/H3N2) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%)
EPI337472 A/swine/Minnesota/01358/2006 (A/H1N1) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3784.9 0.000000e+00 2202/2280 (96%)
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 3784.9 0.000000e+00 2185/2253 (96%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3784.9 0.000000e+00 2186/2254 (96%)
EPI291888 A/Texas/14/2008 (A/H1N1) segment 1 (PB2) 3783.1 0.000000e+00 2199/2274 (96%)
EPI219357 A/swine/Kansas/015252/2009 (A/H3N2) segment 1 (PB2) 3779.4 0.000000e+00 2202/2280 (96%)
EPI98722 A/swine/IN/PU542/04 (A/H3N1) segment 1 (PB2) 3779.4 0.000000e+00 2202/2280 (96%)

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PostPosted: Thu Dec 01, 2011 7:16 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI219358 A/swine/Kansas/015252/2009 (A/H3N2) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%)
EPI219366 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3838.5 0.000000e+00 2208/2273 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2209/2275 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3829.2 0.000000e+00 2207/2274 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%)
EPI177843 A/swine/Minnesota/2728/2007 (A/H1N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2274 (96%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3814.5 0.000000e+00 2198/2264 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3812.6 0.000000e+00 2204/2274 (96%)
EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 3812.6 0.000000e+00 2204/2274 (96%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3812.6 0.000000e+00 2205/2275 (96%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3812.6 0.000000e+00 2204/2274 (96%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3801.5 0.000000e+00 2202/2274 (96%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%)
EPI220914 A/swine/Texas/008648/2008 (A/H1N2) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3801.5 0.000000e+00 2202/2274 (96%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3797.8 0.000000e+00 2202/2275 (96%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3796.0 0.000000e+00 2201/2274 (96%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220857 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220833 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220825 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220817 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220809 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220801 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220793 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220777 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI220769 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3796.0 0.000000e+00 2201/2274 (96%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 3790.4 0.000000e+00 2200/2274 (96%)
EPI220881 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%)
EPI220873 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%)
EPI220785 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%)
EPI337479 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2202/2277 (96%)
EPI220930 A/swine/Texas/050625/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI220905 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI220897 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI220865 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2201/2276 (96%)
EPI220849 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI220841 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%)
EPI177840 A/swine/Minnesota/66743/2006 (A/H1N2) segment 2 (PB1) 3784.9 0.000000e+00 2199/2274 (96%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3784.9 0.000000e+00 2199/2274 (96%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%)
EPI281296 A/swine/Iowa/02039/2008 (A/H1N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2274 (96%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI128358 A/Ontario/1252/2007 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 3777.5 0.000000e+00 2197/2273 (96%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3777.5 0.000000e+00 2200/2276 (96%)
EPI337511 A/swine/Minnesota/02324/2008 (A/H1N2) segment 2 (PB1) 3773.8 0.000000e+00 2200/2277 (96%)
EPI291848 A/Minnesota/10/2009 (A/H1N1) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3773.8 0.000000e+00 2196/2272 (96%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3773.8 0.000000e+00 2197/2274 (96%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3768.3 0.000000e+00 2196/2274 (96%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3768.3 0.000000e+00 2195/2272 (96%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 3766.4 0.000000e+00 2187/2262 (96%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 3764.6 0.000000e+00 2186/2260 (96%)
EPI291809 A/Iowa/05/2007 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2195/2274 (96%)
EPI220922 A/swine/Texas/050593/2008 (A/H1N2) segment 2 (PB1) 3762.7 0.000000e+00 2188/2263 (96%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2195/2274 (96%)
EPI337340 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3757.2 0.000000e+00 2194/2274 (96%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2194/2274 (96%)
EPI220889 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 2 (PB1) 3757.2 0.000000e+00 2196/2276 (96%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 3755.4 0.000000e+00 2185/2261 (96%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2196/2277 (96%)
EPI337407 A/swine/Minnesota/02782/2009 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%)
EPI324151 A/SW/SK/11-16/2009 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2191/2271 (96%)
EPI246073 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2185/2262 (96%)
EPI9449 A/Swine/Iowa/930/01 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2193/2274 (96%)

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PostPosted: Thu Dec 01, 2011 7:18 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI291878 A/South Dakota/03/2008 (A/H1N1) segment 3 (PA) 3823.7 0.000000e+00 2096/2109 (99%)
EPI337526 A/swine/Minnesota/001581/2007 (A/H1N1) segment 3 (PA) 3818.1 0.000000e+00 2124/2152 (98%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI166271 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 3 (PA) 3801.5 0.000000e+00 2115/2143 (98%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3790.4 0.000000e+00 2119/2152 (98%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%)
EPI337414 A/swine/Minnesota/01862/2007 (A/H3N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%)
EPI337462 A/swine//Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3764.6 0.000000e+00 2100/2131 (98%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2112/2149 (98%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2099/2130 (98%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3757.2 0.000000e+00 2112/2151 (98%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2112/2151 (98%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2112/2151 (98%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI166274 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2095/2130 (98%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI337598 A/swine/Illinois/01917/2007 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI295331 A/swine/South Dakota/152B/2009 (A/H1N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI291886 A/Texas/14/2008 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI281276 A/swine/Nebraska/02013/2008 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2106/2148 (98%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI337582 A/swine/Illinois/02385/2008 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI337558 A/swine/Illinois/02251/2008 (A/H1N1) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI222651 A/swine/Minnesota/1145/2007 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI337606 A/swine/Illinois/02510/2009 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI337550 A/swine/Minnesota/00484/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2107/2153 (97%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2107/2153 (97%)
EPI302667 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2107/2153 (97%)
EPI291866 A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2107/2153 (97%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI153495 A/swine/Ohio/24366/07 (A/H1N1) segment 3 (PA) 3716.6 0.000000e+00 2090/2129 (98%)
EPI337574 A/swine/Illinois/02695/2009 (A/H1N1) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI323281 A/swine/Minnesota/7931/2007 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI302674 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2106/2153 (97%)
EPI220915 A/swine/Texas/008648/2008 (A/H1N2) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%)
EPI166283 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 3 (PA) 3711.0 0.000000e+00 2085/2123 (98%)
EPI337390 A/swine/Nebraska/00722/2005 (A/H0) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI323199 A/swine/Minnesota/5947/2007 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%)
EPI103169 A/swine/Manitoba/12707/2005 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI323253 A/swine/Minnesota/65767/2006 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%)
EPI291847 A/Minnesota/10/2009 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%)
EPI281283 A/swine/Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2101/2149 (97%)
EPI255753 A/swine/MN/23506/2009 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%)
EPI220931 A/swine/Texas/050625/2008 (A/H1N2) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%)
EPI222673 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2102/2152 (97%)
EPI344401 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2101/2152 (97%)
EPI337406 A/swine/Minnesota/02782/2009 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%)
EPI333149 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2101/2152 (97%)
EPI281274 A/swine/Texas/01976/2008 (A/H1N2) segment 3 (PA) 3690.7 0.000000e+00 2099/2149 (97%)
EPI335617 A/Pennsylvania/11/2011 (A/H3N2) segment 3 (PA) 3683.3 0.000000e+00 2099/2152 (97%)
EPI281280 A/swine/Minnesota/02011/2008 (A/H1N2) segment 3 (PA) 3683.3 0.000000e+00 2096/2146 (97%)
EPI342604 A/swine/NY/A01104005/2011 (A/H3N2) segment 3 (PA) 3679.6 0.000000e+00 2099/2152 (97%)
EPI281275 A/swine/Iowa/02096/2008 (A/H1N1) segment 3 (PA) 3679.6 0.000000e+00 2096/2148 (97%)
EPI337470 A/swine/Minnesota/01358/2006 (A/H1N1) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%)
EPI182828 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%)
EPI344393 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI344386 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI340980 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI339167 A/Maine/06/2011 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI337422 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI337398 A/swine/Illinois/02064/2008 (A/H1N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI337338 A/swine/Kentucky/SG1118/2003 (A/H0) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI222681 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI220850 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%)
EPI342700 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)
EPI342692 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)
EPI342684 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)
EPI281285 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2094/2149 (97%)
EPI220874 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)

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PostPosted: Thu Dec 01, 2011 7:20 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
niman wrote:
A/swine/Kansas/11-109700/2011 has H1N1pdm09 M gene

EPI316636 A/Boston/107/2009 (A/H1N1) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI281938 A/Newark/INS318/2009 (A/H1N1) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI277874 A/Mexico City/WR1668T/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI277730 A/California/WR1319P/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI271276 A/Bochum/INS250/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI270889 A/San Diego/INS203/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI270881 A/San Diego/INS202/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI270578 A/California/VRDL127/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI270570 A/California/VRDL126/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI270458 A/California/VRDL112/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI258887 A/Wisconsin/629-D00692/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI258567 A/California/VRDL91/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI258519 A/California/VRDL13/2010 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI258503 A/California/VRDL11/2010 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI255019 A/New York/7036/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI254755 A/California/VRDL86/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252835 A/Texas/JMS379/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252795 A/Texas/JMS369/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252715 A/Texas/46240925/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252683 A/Texas/46223444/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252063 A/Nevada/01/2010 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252057 A/Louisiana/01/2010 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI252027 A/Colorado/02/2010 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI251894 A/Illinois/15/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249783 A/Wisconsin/629-S1431/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249727 A/Texas/JMS378/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249413 A/Wisconsin/629-S1417/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249349 A/Wisconsin/629-D01904/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249277 A/Wisconsin/629-D01038/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI249269 A/Wisconsin/629-D01015/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI248411 A/Wisconsin/629-S1350/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI248403 A/Wisconsin/629-S1348/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI248219 A/Wisconsin/629-D01570/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI248035 A/Wisconsin/629-D00911/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI247915 A/Wisconsin/629-D00557/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI247867 A/Wisconsin/629-D00401/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI247642 A/New York/5161/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI246789 A/New York/6473/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI246781 A/New York/6346/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI246757 A/New York/6292/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI245581 A/San Diego/INS42/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI245313 A/District of Columbia/INS18/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI245264 A/California/VRDL73/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI245248 A/California/VRDL18/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI237239 A/California/VRDL58/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI237223 A/California/VRDL53/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI237023 A/California/VRDL23/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI223987 A/Texas/45113911/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI223867 A/Texas/45072273/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI223515 A/Texas/45122538/2009 (A/H1N1 pdm09) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI324620 A/Chile/6/2010 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI324371 A/California/VRDL364/2009 (A/H0) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI315574 A/Boston/686/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI315558 A/Boston/683/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI315470 A/Boston/635/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI315414 A/Boston/583/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI312690 A/swine/Minnesota/239105/2009 (A/H3N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI309142 A/New York/6537/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI308796 A/San Diego/INS49/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI288317 A/Boston/698/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI288293 A/Boston/672/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI288213 A/Boston/602/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI288205 A/Boston/595/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI281994 A/Athens/INS331/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI281954 A/Athens/INS320/2009 (A/H1N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI277994 A/Mexico City/WR1765N/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI271364 A/District of Columbia/INS229/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI271348 A/District of Columbia/INS227/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270634 A/California/VRDL1/2010 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270626 A/California/VRDL133/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270618 A/California/VRDL132/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270602 A/California/VRDL130/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270562 A/California/VRDL125/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270554 A/California/VRDL124/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270546 A/California/VRDL123/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270538 A/California/VRDL122/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270490 A/California/VRDL116/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270474 A/California/VRDL114/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270466 A/California/VRDL113/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270450 A/California/VRDL111/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270410 A/California/VRDL106/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI270402 A/California/VRDL105/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI267753 A/New York/4662/2010 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI259416 A/New York/INS151/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258903 A/Wisconsin/629-D00830/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258615 A/California/VRDL99/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258599 A/California/VRDL97/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258479 A/California/VRDL100/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258471 A/California/VRDL10/2010 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI258391 A/Athens/INS163/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI255011 A/New York/7020/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI254747 A/California/VRDL85/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI254707 A/California/VRDL80/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI254102 A/Texas/JMS401/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI253255 A/Hebei/SWL1/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI253067 A/Texas/JMS412/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI253059 A/Texas/JMS411/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI252859 A/Texas/JMS382/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI252851 A/Texas/JMS381/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI252627 A/San Diego/INS104/2009 (A/H1N1 pdm09) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)

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