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PostPosted: Wed Nov 16, 2011 2:45 pm 
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The newly approved influenza PCR detection kit can indirectly detect trH3N2 - infleunza A positives that are pdm NP positive / pdm H1 negative.

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PostPosted: Wed Nov 16, 2011 2:51 pm 
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New CDC-Developed Diagnostic Lab Test for Flu Approved

CDC′s new laboratory test kit for influenza
A laboratory diagnostic kit to diagnose human infections with seasonal influenza viruses and novel influenza A viruses with pandemic potential has been authorized for use by Food and Drug Administration. The in–vitro, or IVD, kit was developed by the Centers for Disease Control and Prevention.

“As the spread of the H1N1 pandemic slowed last year, we conducted an end–to–end review of our nation’s medical countermeasure enterprise, which showed a clear need for better diagnostic tests,” said Dr. Nicole Lurie, assistant secretary for preparedness and response in the U.S. Department of Health and Human Services. “In helping public health officials quickly identify seasonal flu as well as the flu viruses that could become pandemic, this kit can make a real difference in protecting health and saving lives in the United States and around the world.”

The CDC test kit will be given at no cost to qualified international public health laboratories to improve global laboratory capacity for detecting influenza virus infections in human respiratory tract specimens.

The CDC Human Influenza Virus Real–Time RT–PCR Diagnostic Panel utilizes a three–module design. The modules incorporate and streamline previous versions of CDC′s two separate FDA–cleared diagnostic test kits.

The first module is used to identify and distinguish between infection with influenza A and B viruses. The second module can further classify influenza A viruses by subtype, such as H1N1, H3N2 or 2009 H1N1. And the last module specifically detects highly pathogenic avian influenza A (H5N1) virus infection in human respiratory tract specimens, in support of ongoing global preparedness efforts against a possible H5N1 bird flu pandemic.

The modular design makes the kit more efficient for use by diagnostic laboratories, and eliminates waste by allowing users the flexibility to order components separately, according to the laboratory′s needs. “This will lead to more efficient testing, with cost savings for the federal government and for state and local public health agencies,” stated Nancy Cox, P.H.D., director of CDC Influenza Division and director of the World Health Organization Collaborating Center for Surveillance, Epidemiology and Control of Influenza.

The test kit is used with specimens collected from a patient’s upper or lower respiratory tract. Upper respiratory specimens are easily obtainable in an outpatient or inpatient setting, and lower respiratory specimens are typically obtained from severely ill patients with lower respiratory disease (e.g., severe pneumonia) in a hospital setting. The test kit is the only IVD for influenza that is FDA cleared for use with lower respiratory tract specimens. Several studies have shown that among hospitalized patients with severe lower respiratory disease, including critically ill patients requiring mechanical ventilation in the intensive care unit, testing lower–respiratory tract specimens can help detect influenza virus infections that can be missed by only testing upper respiratory tract samples.


http://www.cdc.gov/media/releases/2011/ ... g_lab.html

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PostPosted: Wed Nov 16, 2011 2:52 pm 
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Location: Pittsburgh, PA USA
Detailed description of kit

http://www.dhh.state.la.us/offices/page ... etail=9161

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PostPosted: Wed Nov 16, 2011 3:11 pm 
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Location: Pittsburgh, PA USA
Testing performed at Maine’s Health and Environmental Testing Laboratory on October 14, 2011 indicated a likely swine origin influenza A (H3N2) virus and this result was confirmed at CDC on October 16, 2011.
http://www.cdc.gov/flu/weekly/pdf/External_F1141.pdf

On October 14, 2011, CDC received a report from the state of Maine that an influenza virus specimen had tested positive for a likely swine influenza A (H3N2).

http://www.cdc.gov/media/haveyouheard/s ... virus.html

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PostPosted: Wed Nov 16, 2011 3:29 pm 
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Posts: 27450
Location: Pittsburgh, PA USA
EPI340974 A/Maine/07/2011 (A/H3N2) segment 5 (NP) 486.8 2.155707e-136 263/263 (100%)
EPI340977 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI339164 A/Maine/06/2011 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI335619 A/Pennsylvania/11/2011 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI312981 A/Pennsylvania/40/2010 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI302671 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI302670 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI291892 A/Wisconsin/12/2010 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI291864 A/Pennsylvania/14/2010 (A/H3N2) segment 5 (NP) 481.2 1.002953e-134 262/263 (99%)
EPI335630 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 475.7 4.666285e-133 261/263 (99%)
EPI333146 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 475.7 4.666285e-133 261/263 (99%)
EPI314792 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 5 (NP) 475.7 4.666285e-133 261/263 (99%)
EPI302683 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 5 (NP) 475.7 4.666285e-133 262/264 (99%)
EPI302682 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 5 (NP) 475.7 4.666285e-133 261/263 (99%)
EPI244301 A/Kansas/13/2009 (A/H3N2) segment 5 (NP) 475.7 4.666285e-133 261/263 (99%)
EPI293966 A/Minnesota/11/2010 (A/H3N2) segment 5 (NP) 472.0 6.036221e-132 260/263 (98%)
EPI337039 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 5 (NP) 470.2 2.171011e-131 260/263 (98%)
EPI337034 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 5 (NP) 470.2 2.171011e-131 260/263 (98%)
EPI335611 A/Pennsylvania/09/2011 (A/H3N2) segment 5 (NP) 470.2 2.171011e-131 260/263 (98%)
EPI291837 A/Minnesota/09/2010 (A/H3N2) segment 5 (NP) 470.2 2.171011e-131 260/263 (98%)
EPI312650 A/swine/Indiana/240218/2010 (A/H1N2) segment 5 (NP) 464.6 1.010073e-129 259/263 (98%)
EPI291822 A/Michigan/09/2007 (A/H1N2) segment 5 (NP) 464.6 1.010073e-129 259/263 (98%)
EPI337954 A/swine/Illinois/02450/2008 (A/H0) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337532 A/swine/Minnesota/001332/2006 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337524 A/swine/Minnesota/001581/2007 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337500 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337428 A/swine/Indiana/00427/2004 (A/H1N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337404 A/swine/Minnesota/02782/2009 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337396 A/swine/Illinois/02064/2008 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI314634 A/swine/QC/2108-2/2009 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI295328 A/swine/South Dakota/152B/2009 (A/H1N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI281254 A/swine/North Carolina/02023/2008 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI280413 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI226731 A/Iowa/CEID23/2005 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI164055 A/swine/Korea/CAS09/2006 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI164054 A/swine/Korea/CAS07/2005 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI164053 A/swine/Korea/CAN04/2005 (A/H3N2) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 453.5 2.186425e-126 257/263 (97%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 451.7 7.863782e-126 256/262 (97%)
EPI337604 A/swine/Illinois/02510/2009 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337596 A/swine/Illinois/01917/2007 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337588 A/swine/Illinois/01918/2007 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337580 A/swine/Illinois/02385/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337572 A/swine/Illinois/02695/2009 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337556 A/swine/Illinois/02251/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337444 A/swine/Minnesota/00611/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337412 A/swine/Minnesota/01862/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337388 A/swine/Nebraska/00722/2005 (A/H0) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI337372 A/swine/Illinois/02238/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI335060 A/swine/North Carolina/47834/2000 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI327286 A/swine/Texas/4199-2/1998 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI324097 A/swine/QC/3399-6/2009 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI324036 A/swine/QC/1695-3/2009 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI324019 A/swine/QC/1531-3/2009 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI323282 A/swine/Minnesota/7931/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI314334 A/turkey/BC/1529-3/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI291829 A/Minnesota/03/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI291806 A/Iowa/05/2007 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI281256 A/swine/Minnesota/02011/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI281255 A/swine/Missouri/02060/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI281252 A/swine/Nebraska/02013/2008 (A/H1N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220908 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220900 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220892 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220884 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220876 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220868 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220860 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220852 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220844 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220836 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220828 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220820 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220812 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220804 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220796 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220788 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220780 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI220772 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI184472 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI184466 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI184460 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI184454 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI182826 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI182819 A/swine/Quebec/4001/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103210 A/turkey/Ontario/31232/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103192 A/swine/Ontario/33853/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103174 A/swine/Manitoba/12707/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103156 A/swine/British Columbia/28103/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103138 A/swine/Alberta/14722/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI103120 A/Ontario/RV1273/2005 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI101395 A/turkey/Ohio/313053/04 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI98714 A/swine/MI/PU243/04 (A/H3N1) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI15002 A/SW/MN/23124-S/01 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI15000 A/SW/MN/23124-T/01 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI9395 A/Swine/Indiana/P12439/00 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI9385 A/Swine/Ohio/891/01 (A/H1N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI5853 A/Swine/Iowa/8548-1/98 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI5849 A/Swine/Texas/4199-2/98 (A/H3N2) segment 5 (NP) 448.0 1.017244e-124 256/263 (97%)
EPI219369 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 5 (NP) 446.2 3.658662e-124 255/262 (97%)
EPI219361 A/swine/Kansas/015252/2009 (A/H3N2) segment 5 (NP) 446.2 3.658662e-124 255/262 (97%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 446.2 3.658662e-124 255/262 (97%)
EPI324044 A/swine/QC/1697-1/2009 (A/H1N1) segment 5 (NP) 444.3 1.315889e-123 255/263 (96%)
EPI337548 A/swine/Minnesota/00484/2005 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337540 A/swine/Minnesota/02475/2008 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337468 A/swine/Minnesota/01358/2006 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337452 A/swine/North Carolina/00839/2005 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337420 A/swine/Minnesota/02053/2008 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337365 A/swine/Minnesota/00709/2005 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI337352 A/swine/Minnesota/01146/2006 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 253/260 (97%)
EPI337336 A/swine/Kentucky/SG1118/2003 (A/H0) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI335068 A/swine/Minnesota/1192/2001 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI314642 A/swine/QC/382/2009 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI312706 A/swine/North Carolina/239108/2010 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI307930 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI291999 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI291845 A/Minnesota/10/2009 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI281261 A/swine/Minnesota/02053/2008 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI281257 A/swine/Minnesota/02093/2008 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI255755 A/swine/MN/23506/2009 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI222652 A/swine/Minnesota/1145/2007 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI220933 A/swine/Texas/050625/2008 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI220925 A/swine/Texas/050593/2008 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI179347 A/swine/NC/00573/2005 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI179339 A/swine/IL/00685/2005 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI164059 A/swine/Korea/CY09/2007 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI164057 A/swine/Korea/CY05/2007 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI164056 A/swine/Korea/CY04/2007 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI164052 A/swine/Korea/CAS05/2004 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI126568 A/swine/Missouri/2124514/2006 (A/H2N3) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI15274 A/Swine/Korea/CY02/02 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI15008 A/SW/MN/34893/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI15004 A/SW/MN/13130/00 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14994 A/SW/NE/18339/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14990 A/SW/MN/16419/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14988 A/SW/MN/16356/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14978 A/SW/CO/17871/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14976 A/SW/NC/17366/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14970 A/SW/MN/3227/00 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14968 A/SW/KS/13481-S/00 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14966 A/SW/KS/13481-T/00 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI14962 A/SW/NC/45319/99 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI9397 A/Swine/Illinois/100085A/01 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI9391 A/Swine/Minnesota/55551/00 (A/H1N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI8417 A/Wisconsin/10/98 (A/H1N1) segment 5 (NP) 442.5 4.732778e-123 256/264 (96%)
EPI7575 A/Swine/Iowa/533/99 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI5851 A/Swine/Minnesota/9088-2/98 (A/H3N2) segment 5 (NP) 442.5 4.732778e-123 255/263 (96%)
EPI177598 A/swine/Hong Kong/78/2003 (A/H1N2) segment 5 (NP) 440.6 1.702210e-122 254/262 (96%)
EPI98730 A/swine/IN/PU542/04 (A/H3N1) segment 5 (NP) 438.8 6.122235e-122 254/263 (96%)
EPI337516 A/swine/Minnesota/001444/2007 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI337436 A/swine/Minnesota/02905/2009 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI324159 A/SW/SK/11-35/2009 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI324154 A/SW/SK/11-16/2009 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI323996 A/swine/QC/1488-2/2009 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI323979 A/swine/QC/398/2009 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI323269 A/swine/Minnesota/66960/2006 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI323206 A/swine/Minnesota/65767/2006 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI314780 A/swine/QC/1685-1/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI314686 A/swine/QC/1840-2/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI314678 A/swine/QC/414/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI314662 A/swine/QC/1698-1/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI314661 A/swine/QC/1685-5/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI291996 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI291884 A/Texas/14/2008 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI291816 A/Iowa/16/2009 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI281258 A/swine/Kentucky/02086/2008 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI246076 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI246068 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI246060 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI235272 A/swine/North Carolina/2003 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI228923 A/turkey/Illinois/2004 (A/H3N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI222645 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI164051 A/swine/Korea/CY08/2007 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI164050 A/swine/Korea/PZ14/2006 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI164049 A/swine/Korea/PZ7/2006 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI164048 A/swine/Korea/PZ4/2006 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI164045 A/swine/Korea/JL02/2005 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 255/264 (96%)
EPI126590 A/swine/Missouri/4296424/2006 (A/H2N3) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI98694 A/swine/Minnesota/00395/2004 (A/H3N1) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI14992 A/SW/MN/17138/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI14980 A/SW/MO/1877/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI14974 A/SW/IN/14810-S/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI14972 A/SW/IN/14810-T/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI14576 A/Turkey/MO/24093/99 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI9399 A/Swine/Illinois/100084/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI9389 A/Swine/North Carolina/93523/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI9387 A/Swine/North Carolina/98225/01 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 253/263 (96%)
EPI7401 A/Swine/Indiana/9K035/99 (A/H1N2) segment 5 (NP) 436.9 2.201947e-121 254/263 (96%)
EPI222675 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 5 (NP) 433.2 2.848399e-120 253/263 (96%)
EPI337508 A/swine/Minnesota/02324/2008 (A/H1N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI337492 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI337476 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI337344 A/swine/Iowa/01700/2007 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI335027 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI335020 A/swine/North Carolina/18161/2002 (A/H1N1) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI323971 A/swine/QC/370/2009 (A/H1N1) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI323275 A/swine/Minnesota/761/2007 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 254/264 (96%)
EPI323200 A/swine/Minnesota/5947/2007 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI292003 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI292000 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI291997 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI281260 A/swine/Iowa/02039/2008 (A/H1N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI281251 A/swine/Iowa/02096/2008 (A/H1N1) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI227577 A/turkey/NC/353568/2005 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI173578 A/swine/Korea/C13/2008 (A/H5N2) segment 5 (NP) 431.4 1.024466e-119 254/264 (96%)
EPI168651 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI106770 A/swine/Korea/CN22/2006 (A/H3N1) segment 5 (NP) 431.4 1.024466e-119 254/264 (96%)
EPI106768 A/swine/Korea/PZ72-1/2006 (A/H3N1) segment 5 (NP) 431.4 1.024466e-119 254/264 (96%)
EPI17875 A/duck/NC/91347/01 (A/H1N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI14984 A/SW/MN/12883/00 (A/H1N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI7592 A/Swine/Iowa/569/99 (A/H3N2) segment 5 (NP) 431.4 1.024466e-119 253/263 (96%)
EPI324165 A/SW/MB/5-5/2009 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI291905 A/Ohio/02/2007 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI291857 A/Ohio/01/2007 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI228773 A/swine/Ontario/11112/04 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI184449 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI173660 A/swine/OH/511445/2007 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI164047 A/swine/Korea/Asan04/2006 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI164046 A/swine/Korea/JL04/2005 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI164044 A/swine/Korea/JL01/2005 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI164043 A/swine/Korea/Hongsong2/2004 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI158918 A/turkey/IA/21089-3/1992 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI153516 A/swine/Ohio/24366/07 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI128351 A/Ontario/1252/2007 (A/H3N2) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI105694 A/swine/Korea/S15/2006 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI105670 A/swine/Korea/S11/2005 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI105653 A/swine/Korea/S5/2005 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 253/264 (95%)
EPI100064 A/swine/Ontario/53518/03 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI100010 A/swine/Ontario/57561/03 (A/H1N1) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI14998 A/SW/MN/22860-S/01 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 250/260 (96%)
EPI14996 A/SW/MN/22860-T/01 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 250/260 (96%)
EPI14982 A/SW/NE/21147/01 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 250/260 (96%)
EPI9393 A/Swine/Iowa/930/01 (A/H1N2) segment 5 (NP) 425.8 4.766379e-118 252/263 (95%)
EPI6931 A/Swine/Wisconsin/168/97 (A/H1N1) segment 5 (NP) 424.0 1.714295e-117 251/262 (95%)
EPI6929 A/Swine/Wisconsin/166/97 (A/H1N1) segment 5 (NP) 424.0 1.714295e-117 251/262 (95%)
EPI6925 A/Swine/Wisconsin/163/97 (A/H1N1) segment 5 (NP) 424.0 1.714295e-117 251/262 (95%)
EPI335044 A/swine/Minnesota/5763/2003 (A/H1N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI314694 A/swine/QC/440-A/2009 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI314514 A/quail/QC/FAV-10/2008 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 252/264 (95%)
EPI292002 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI291787 A/Illinois/09/2007 (A/H1N1) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI222637 A/swine/Kansas/77778/2007 (A/H1N1) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI177630 A/swine/Hong Kong/915/2004 (A/H1N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI177590 A/swine/Hong Kong/NS623/2002 (A/H1N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI165700 A/swine/Memphis/1/1990 (A/H1N1) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI164404 A/swine/Korea/JNS06/2004 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI164060 A/swine/Korea/CY10/2007 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI164058 A/swine/Korea/CY07/2007 (A/H3N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI77680 A/swine/California/T9001707/1991 (A/H1N1) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI14964 A/SW/AR/12491/00 (A/H1N2) segment 5 (NP) 420.3 2.217580e-116 251/263 (95%)
EPI163612 A/swine/Guangxi/17/2005 (A/H1N2) segment 5 (NP) 418.5 7.975838e-116 250/262 (95%)
EPI6927 A/Swine/Wisconsin/164/97 (A/H1N1) segment 5 (NP) 418.5 7.975838e-116 250/262 (95%)
EPI337460 A/swine//Ohio/02026/2008 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI332938 A/swine/Iowa/3421/1990 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 251/264 (95%)
EPI311504 A/swine/Hong Kong/729/2005 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI311432 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI311392 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI311376 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI311168 A/swine/Hong Kong/8690/2001 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI310318 A/swine/Korea/4779/2010 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 240/248 (96%)
EPI310314 A/swine/Korea/4381/2009 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 240/248 (96%)
EPI309971 A/Maryland/05/2011 (A/H1N1 swl) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI291876 A/South Dakota/03/2008 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI281253 A/swine/North Carolina/02084/2008 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI259232 A/swine/Guangdong/1/2010 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI178955 A/Maryland/12/1991 (A/H1N1 seasonal) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI166063 A/swine/Shanghai/1/2007 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI130809 A/swine/Beijing/94/1991 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI129194 A/MD/12/1991 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI73841 A/swine/Iowa/24297/1991 (A/H1N1) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI15006 A/SW/OH/7802/00 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI14986 A/SW/MN/3128/00 (A/H1N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI7609 A/Swine/Minnesota/593/99 (A/H3N2) segment 5 (NP) 414.8 1.031740e-114 250/263 (95%)
EPI6933 A/Swine/Wisconsin/235/97 (A/H1N1) segment 5 (NP) 412.9 3.710796e-114 249/262 (95%)
EPI336807 A/swine/Quebec/1257774/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI334595 A/Dakar/WRAIR0020T/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI334587 A/Dakar/WRAIR0020T/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI333534 A/District of Columbia/WRAIR0304/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI333526 A/District of Columbia/WRAIR0306/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI333502 A/District of Columbia/WRAIR0309/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI333494 A/District of Columbia/WRAIR0310/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI332592 A/California/21/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI330317 A/Gansu-Chengguan/SWL579/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI330165 A/Chongqing-Wanzhou/SWL53/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324320 A/swine/Binh Duong/03_14/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324319 A/swine/Binh Duong/03_13/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324318 A/swine/Binh Duong/03_10/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324317 A/swine/Binh Duong/03_09/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324316 A/swine/Binh Duong/03_08/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324315 A/swine/Binh Duong/03_06/2010 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324227 A/swine/MB/36/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI324146 A/SW/SK/12-71/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI323601 A/England/435/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI321803 A/swine/Hubei/04/2009 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI316494 A/Wisconsin/18/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI316403 A/North Carolina/08/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313081 A/swine/Hong Kong/2603/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313073 A/swine/Hong Kong/2592/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313065 A/swine/Hong Kong/2518/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313057 A/swine/Hong Kong/2507/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313049 A/swine/Hong Kong/2503/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313041 A/swine/Hong Kong/2461/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313033 A/swine/Hong Kong/2445/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313025 A/swine/Hong Kong/2428/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313017 A/swine/Hong Kong/2422/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313009 A/swine/Hong Kong/2161/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI313001 A/swine/Hong Kong/1937/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311768 A/swine/Hong Kong/NS252/2009 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311224 A/swine/Hong Kong/NS1344/2001 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311160 A/swine/Hong Kong/8631/2001 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311152 A/swine/Hong Kong/8376/2001 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311136 A/swine/Hong Kong/7945/2000 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311128 A/swine/Hong Kong/NS241/2000 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI311014 A/swine/Hong Kong/835/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310990 A/swine/Hong Kong/829/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310982 A/swine/Hong Kong/813/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310950 A/swine/Hong Kong/574/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310942 A/swine/Hong Kong/347/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310934 A/swine/Hong Kong/299/1993 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI310152 A/Virginia/04/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI309955 A/Maryland/03/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI309796 A/Arizona/01/2011 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI309134 A/New York/6418/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI304592 A/swine/QLD/09-02865-07/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI303790 A/Canada-NB/RV2457/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI302693 A/swine/Taiwan/CH-1204/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI302591 A/Thailand/CU-H1786/2010 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI292863 A/Brisbane/2015/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI291798 A/Iowa/02/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 241/251 (96%)
EPI287458 A/swine/Guangdong/1222/2006 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI285550 A/Thailand/CU-H847/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI283626 A/Copenhagen/INS434/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI283618 A/Copenhagen/INS433/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI283569 A/Managua/5953.01/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI283545 A/Managua/4209.04/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI283237 A/Managua/5595.03/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282386 A/Managua/5235.03/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282354 A/Managua/2958.01/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282282 A/Managua/1054.02/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282226 A/Managua/2604.02/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282210 A/Managua/1077.04/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282194 A/Managua/4186.02/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI282026 A/Athens/INS335/2009 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI281259 A/swine/Ohio/02026/2008 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI281250 A/swine/Texas/01976/2008 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI277722 A/California/WR1318P/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI277706 A/California/WR1316P/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI277698 A/California/WR1315P/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI277690 A/California/WR1314P/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI277197 A/Athens/INS414/2010 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI275050 A/Managua/3467.01/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI273639 A/California/06/2010 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI271388 A/District of Columbia/INS232/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI271372 A/District of Columbia/INS230/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI270674 A/California/VRDL7/2010 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI270434 A/California/VRDL109/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI254078 A/Texas/JMS366/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI254051 A/Wisconsin/67/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI254011 A/Utah/03/2010 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252515 A/Ontario/315637/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252507 A/Ontario/315613/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252499 A/Ontario/315187/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252475 A/Ontario/315047/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252467 A/Ontario/315015/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252435 A/Ontario/314095/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252427 A/Ontario/313762/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252411 A/Ontario/308054/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252403 A/Ontario/305598/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252395 A/Ontario/305139/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252387 A/Ontario/304434/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI252022 A/California/02/2010 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI249397 A/Wisconsin/629-S1414/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI249189 A/Managua/791.03/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI249141 A/Managua/5363.02/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI249093 A/Managua/3275.01/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI249077 A/Managua/3189.01/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI246973 A/San Diego/INS61/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI246853 A/New York/6775/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI245637 A/Wisconsin/629-D00809/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI237031 A/California/VRDL25/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI237015 A/California/VRDL22/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI232417 A/swine/Hainan/1/2005 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI230498 A/swine/4/Mexico/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI227948 A/swine/Taiwan/TD-4119B2/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI225945 A/HIROSHIMA/287/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI224371 A/Brownsville/37OS/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI224323 A/Brownsville/37H/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI223979 A/Texas/45032708/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI223859 A/Texas/45043852/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI223835 A/Texas/45101422/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI223795 A/Texas/45091402/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI222980 A/Prague/196-81511/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI222683 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI220917 A/swine/Texas/008648/2008 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI218314 A/New York/4866/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI218034 A/New York/4402/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI214866 A/Zhejiang-Yiwu/11/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI213084 A/New York/4100/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI213044 A/New York/4052/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI213004 A/New York/3960/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI212996 A/New York/3959/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI191953 A/Honduras/2039/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI186650 A/Brawley/40082/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI184306 A/Mexico/4635/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI181842 A/California/13/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI181014 A/New York/3176/2009 (A/H1N1 swl) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI179355 A/swine/IL/07003243/2007 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI177638 A/swine/Hong Kong/1562/2005 (A/H1N2) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI130811 A/swine/Hong Kong/273/1994 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI130241 A/swine/Iowa/17672/88 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI130215 A/Wisconsin/3523/1988 (A/H1N1 seasonal) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI100118 A/swine/Ontario/23866/04 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI62867 A/swine/Maryland/23239/1991 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI62528 A/swine/Iowa/17672/1988 (A/H1N1) segment 5 (NP) 409.2 4.800218e-113 249/263 (94%)
EPI254819 A/New York/1999/2010 (A/H1N1 swl) segment 5 (NP) 405.5 6.209475e-112 248/263 (94%)
EPI341571 A/California/04/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI339329 A/Joshkar-Ola/CRIE-BLP/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI339321 A/Nizhnii Novgorod/CRIE-BLM/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI339313 A/Nizhnii Novgorod/CRIE-NGV/2010 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI339148 A/Cheboksary/IIV-92/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI338775 A/canine/Beijing/cau2/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI338769 A/canine/Beijing/cau9/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI338299 A/Bangkok/INS520/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337764 A/swine/Guangdong/297/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337763 A/swine/Guangdong/294/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337762 A/swine/Guangdong/286/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337761 A/swine/Guangdong/278/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337760 A/swine/Guangdong/275/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337755 A/swine/Guangdong/114/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337754 A/swine/Guangdong/94/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI337753 A/swine/Guangdong/106/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI336784 A/Orenburg/01/2009 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI336749 A/swine/Alberta/25/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI336743 A/Shanghai/3242T/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI336000 A/Shanghai/3141T/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335595 A/Khon Kaen/INS461/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335587 A/Bangkok/INS484/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335571 A/Bangkok/INS487/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335563 A/Bangkok/INS488/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335539 A/Bangkok/INS508/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335531 A/Bangkok/INS509/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI335413 A/Khon Kaen/INS444/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI334563 A/Mexico City/WRAIR3569N/2010(H1N1) (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333550 A/swine/Alberta/25/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333510 A/District of Columbia/WRAIR0308/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333463 A/Mexico/47N/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333455 A/South Carolina/WRAIR1645P/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333423 A/Moscow/WRAIR1965P/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333415 A/Moscow/WRAIR1966P/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333359 A/Budapest/WRAIR3789T/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333351 A/Budapest/WRAIR3794N/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333343 A/Budapest/WRAIR3794T/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333287 A/Moscow/WRAIR4316N/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333279 A/Moscow/WRAIR4316T/2011 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI333245 A/Lima/WRAIR1687P/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332961 A/Delhi/NIV3610/2009 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332885 A/Rtng/NIV11650/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332878 A/Ngp/NIV14725/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332870 A/Ngp/NIV22704/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332863 A/Mum/NIV398/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332856 A/Mum/NIV5442/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332835 A/Mum/NIV9945/2009 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332827 A/India/NIV29386/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332816 A/India/NIV30784/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332804 A/India/NIV34760/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332650 A/Brunei/1/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332600 A/Michigan/03/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332586 A/California/20/2011 (A/H1N1 swl) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332554 A/Khon Kaen/INS441/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332546 A/Khon Kaen/INS443/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332538 A/Khon Kaen/INS445/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332530 A/Khon Kaen/INS446/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332522 A/Khon Kaen/INS447/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332514 A/Khon Kaen/INS449/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332506 A/Khon Kaen/INS450/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332498 A/Khon Kaen/INS451/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332490 A/Khon Kaen/INS452/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332482 A/Khon Kaen/INS453/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332474 A/Khon Kaen/INS454/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)
EPI332466 A/Khon Kaen/INS455/2010 (A/H1N1) segment 5 (NP) 403.7 2.233324e-111 248/263 (94%)

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PostPosted: Wed Nov 16, 2011 4:34 pm 
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Commentary

http://www.recombinomics.com/News/11161 ... E_PCR.html

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PostPosted: Wed Nov 16, 2011 6:08 pm 
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Detail on Indiana case (59M - Veterinarian)

• An adult male developed fever, cough, shortness of breath, nausea, vomiting and body aches on October 20, 2011. The patient was hospitalized, but has been discharged and is recovered from his illness.
• The patient did not receive influenza antiviral medications.
• On October 22, 2011, a respiratory specimen was collected during hospital admission and after conflicting results were obtained at the hospital laboratory, the specimen was forwarded to the Indiana state public health laboratory.
• On October 28, 2011, testing at the Indiana public health laboratory indicated a likely swine-origin influenza A (H3) virus.
• The specimen was forwarded to CDC on October 29, 2011. On October 31, partial genome sequencing confirmed the virus as a swine-origin triple reassortant influenza A (H3N2) virus with the M gene from pH1N1.
• The patient reported exposure to pigs in the week prior to illness onset.
• No additional ill persons have been identified, but investigation is ongoing.
• There are no epidemiologic links between this case and the previous case identified in Indiana.

https://linksweb.oph.dhh.louisiana.gov/ ... 202011.doc

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PostPosted: Wed Nov 16, 2011 6:12 pm 
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niman wrote:
Detail on Indiana case (59M - Veterinarian)

• An adult male developed fever, cough, shortness of breath, nausea, vomiting and body aches on October 20, 2011. The patient was hospitalized, but has been discharged and is recovered from his illness.
• On October 22, 2011, a respiratory specimen was collected during hospital admission and after conflicting results were obtained at the hospital laboratory, the specimen was forwarded to the Indiana state public health laboratory.
• On October 28, 2011, testing at the Indiana public health laboratory indicated a likely swine-origin influenza A (H3) virus.
• The specimen was forwarded to CDC on October 29, 2011. On October 31, partial genome sequencing confirmed the virus as a swine-origin triple reassortant influenza A (H3N2) virus with the M gene from pH1N1.

https://linksweb.oph.dhh.louisiana.gov/ ... 202011.doc

The above comment on "likely swine-origin influenza A (3) virus" strongly suggest Indiana State is also using the new PCR test.

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PostPosted: Thu Nov 17, 2011 5:14 am 
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Commentary

http://www.recombinomics.com/News/11171 ... N_PCR.html

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