Rhiza Labs FluTracker Forum

Tandem PB1 T898C and C906T

EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI327552 A/duck/Victoria/24/1981 (A/H8N4) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI327280 A/duck/Victoria/3/1980 (A/H4N6) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI327276 A/duck/Victoria/2b/1980 (A/H1N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI316541 A/herring gull/Mongolia/454/2008 (A/H13N8) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI311573 A/swine/Hong Kong/1791/2006 (A/H1N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI306427 A/swine/Sweden/9706/2010 (A/H1N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI297653 A/duck/Victoria/2a/1980 (A/H1N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI297644 A/Pacific black duck/Western Australia/4045/1980 (A/H6N5) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI281122 A/swine/Italy/58769/2010 (A/H1N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI254285 A/duck/Victoria/1976 (A/H7N7) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI242235 A/chicken/Victoria/1976 (A/H7N7) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI214921 A/swine/Sweden/1021/2009 (A/H1N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI190332 A/mallard/Netherlands/22/2007 (A/H7N1) segment 4 (HA) 27.0 7.127875e+00 14/14 (100%)
EPI190324 A/mallard/Netherlands/29/2006 (A/H7N2) segment 4 (HA) 27.0 7.127875e+00 14/14 (100%)
EPI182113 A/mallard/Netherlands/33/2006 (A/H7N8) segment 4 (HA) 27.0 7.127875e+00 14/14 (100%)
EPI180941 A/chicken/Laos/37/2008 (A/H5N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI180933 A/chicken/Laos/35/2008 (A/H5N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI175382 A/swine/Hungary/13509/2007 (A/H3N2) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI175374 A/swine/Hungary/19774/2006 (A/H1N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI89725 A/duck/New Zealand/164/76 (A/H11N3) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI89609 A/black duck/AUS/4045/1980 (A/H6N5) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)
EPI89590 A/duck/Australia/749/80 (A/H1N1) segment 2 (PB1) 27.0 7.127875e+00 14/14 (100%)

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Sequences at GISAID have been updated with more complete sequences today

segment identifier length accession # INSDC Sequence


PB2 2012700918_206046_v1_1 2264 EPI339168

PB1 2012700918_206046_v1_2 2274 EPI339169

PA 2012700918_206046_v1_3 2151 EPI339167

HA 2012700918_206046_v1_4 1701 EPI339171

NP 2012700918_206046_v1_5 1497 EPI339164

NA 2012700918_206046_v1_6 1388 EPI339170

MP 2012700918_206046_v1_7 966 EPI339166

NS 2012700918_206046_v1_8 844 EPI339165

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Full H3 matches

EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1694/1701 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1689/1701 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 3024.1 0.000000e+00 1663/1676 (99%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2950.2 0.000000e+00 1611/1618 (99%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2909.6 0.000000e+00 1661/1703 (97%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2898.5 0.000000e+00 1658/1702 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1656/1703 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1656/1703 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1656/1703 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1655/1703 (97%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1650/1704 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1650/1704 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1650/1704 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1703 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1647/1704 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2824.6 0.000000e+00 1638/1691 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1646/1704 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2817.3 0.000000e+00 1643/1702 (96%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1645/1704 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2808.0 0.000000e+00 1635/1691 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2806.2 0.000000e+00 1634/1690 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1642/1704 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1634/1694 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2784.0 0.000000e+00 1640/1704 (96%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1636/1701 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1639/1704 (96%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1636/1702 (96%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1636/1702 (96%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1638/1704 (96%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1637/1705 (96%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1636/1704 (96%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1635/1703 (96%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1636/1705 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1636/1705 (95%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1634/1703 (95%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1635/1705 (95%)
EPI316991 A/swine/Iowa/A0109035/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1631/1701 (95%)
EPI316990 A/swine/Iowa/A0109034/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1631/1701 (95%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1632/1702 (95%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2745.2 0.000000e+00 1630/1701 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1626/1695 (95%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1632/1704 (95%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1632/1704 (95%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1631/1704 (95%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1631/1704 (95%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1631/1704 (95%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1632/1705 (95%)
EPI338543 A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1630/1704 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1629/1703 (95%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1630/1704 (95%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1631/1705 (95%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1628/1703 (95%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1627/1703 (95%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1627/1703 (95%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1628/1705 (95%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2712.0 0.000000e+00 1628/1706 (95%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2710.2 0.000000e+00 1627/1705 (95%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 2706.5 0.000000e+00 1627/1706 (95%)
EPI314515 A/quail/QC/FAV-10/2008 (A/H3N2) segment 4 (HA) 2704.6 0.000000e+00 1623/1702 (95%)
EPI307945 A/swine/Illinois/A01057088/2010 (A/H3N2) segment 4 (HA) 2704.6 0.000000e+00 1627/1706 (95%)

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Full NS

EPI339165 A/Maine/06/2011 (A/H3N2) segment 8 (NS) 1559.7 0.000000e+00 844/844 (100%)
EPI335614 A/Pennsylvania/09/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 841/844 (99%)
EPI312978 A/Pennsylvania/40/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 841/844 (99%)
EPI293969 A/Minnesota/11/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 841/844 (99%)
EPI335633 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 840/844 (99%)
EPI333147 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 840/844 (99%)
EPI244304 A/Kansas/13/2009 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 840/844 (99%)
EPI335625 A/Pennsylvania/10/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 839/844 (99%)
EPI335622 A/Pennsylvania/11/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 839/844 (99%)
EPI314794 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI291889 A/Wisconsin/12/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI302684 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI302681 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI302669 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291861 A/Pennsylvania/14/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291834 A/Minnesota/09/2010 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291819 A/Michigan/09/2007 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI302672 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 833/839 (99%)
EPI323271 A/swine/Minnesota/66960/2006 (A/H3N2) segment 8 (NS) 1493.2 0.000000e+00 832/844 (98%)
EPI173662 A/swine/OH/511445/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 829/844 (98%)
EPI337461 A/swine//Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 828/844 (98%)
EPI281223 A/swine/Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 828/844 (98%)
EPI291903 A/Ohio/02/2007 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291854 A/Ohio/01/2007 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 827/844 (97%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 826/844 (97%)
EPI291784 A/Illinois/09/2007 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 825/844 (97%)
EPI15030 A/SW/IN/14810-S/01 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI15028 A/SW/IN/14810-T/01 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI337360 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI335025 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI307933 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%)
EPI291960 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI184475 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI184469 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI184457 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI25405 A/turkey/North Carolina/12344/03 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 824/844 (97%)
EPI327283 A/swine/Texas/4199-2/1998 (A/H3N2) segment 8 (NS) 1447.0 0.000000e+00 823/843 (97%)
EPI222648 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 8 (NS) 1445.2 0.000000e+00 821/840 (97%)
EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI291952 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI222639 A/swine/Kansas/77778/2007 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 818/836 (97%)
EPI184463 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 823/844 (97%)
EPI164075 A/swine/Korea/CAS09/2006 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI98736 A/swine/IN/PU542/04 (A/H3N1) segment 8 (NS) 1443.4 0.000000e+00 824/845 (97%)
EPI5873 A/Swine/Minnesota/9088-2/98 (A/H3N2) segment 8 (NS) 1441.5 0.000000e+00 820/840 (97%)
EPI5870 A/Swine/Texas/4199-2/98 (A/H3N2) segment 8 (NS) 1441.5 0.000000e+00 820/840 (97%)
EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI337345 A/swine/Iowa/01700/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI291963 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI291958 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 823/845 (97%)
EPI222678 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI222655 A/swine/Minnesota/1145/2007 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220928 A/swine/Texas/050593/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220895 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220855 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220839 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220831 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220823 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220815 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220807 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220791 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI220775 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI219372 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI168649 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI164074 A/swine/Korea/CAS07/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI164073 A/swine/Korea/CAN04/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI164062 A/swine/Korea/CAS08/2005 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI158872 A/turkey/MN/366767/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 822/844 (97%)
EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI25408 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 823/845 (97%)
EPI9401 A/Swine/Ohio/891/01 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI5876 A/Swine/Iowa/8548-1/98 (A/H3N2) segment 8 (NS) 1436.0 0.000000e+00 819/840 (97%)
EPI337493 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 8 (NS) 1432.3 0.000000e+00 821/844 (97%)
EPI323266 A/swine/Minnesota/66853/2006 (A/H3N2) segment 8 (NS) 1432.3 0.000000e+00 821/844 (97%)
EPI291961 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 8 (NS) 1432.3 0.000000e+00 821/844 (97%)
EPI281214 A/swine/Texas/01976/2008 (A/H1N2) segment 8 (NS) 1432.3 0.000000e+00 821/844 (97%)

_________________
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Full PB1

EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3978.8 0.000000e+00 2226/2262 (98%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2230/2272 (98%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI295333 A/swine/South Dakota/152B/2009 (A/H1N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3945.6 0.000000e+00 2226/2271 (98%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI293963 A/Minnesota/11/2010 (A/H3N2) segment 2 (PB1) 3919.7 0.000000e+00 2222/2274 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI312979 A/Pennsylvania/40/2010 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI291895 A/Wisconsin/12/2010 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI291867 A/Pennsylvania/14/2010 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2223/2275 (97%)
EPI337559 A/swine/Illinois/02251/2008 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3903.1 0.000000e+00 2221/2275 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3899.4 0.000000e+00 2219/2273 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI302680 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI337607 A/swine/Illinois/02510/2009 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%)
EPI337583 A/swine/Illinois/02385/2008 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%)
EPI337575 A/swine/Illinois/02695/2009 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%)
EPI188120 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 2 (PB1) 3882.8 0.000000e+00 2201/2251 (97%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI302668 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3875.4 0.000000e+00 2216/2275 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3875.4 0.000000e+00 2209/2264 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2217/2276 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI281295 A/swine/Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3866.2 0.000000e+00 2215/2274 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2215/2276 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2214/2275 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3862.5 0.000000e+00 2215/2276 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3845.8 0.000000e+00 2210/2273 (97%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3845.8 0.000000e+00 2212/2276 (97%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 3844.0 0.000000e+00 2209/2273 (97%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 3840.3 0.000000e+00 2210/2275 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2210/2276 (97%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3834.8 0.000000e+00 2210/2276 (97%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 3831.1 0.000000e+00 2198/2260 (97%)
EPI337423 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2207/2274 (97%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3829.2 0.000000e+00 2209/2276 (97%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3827.4 0.000000e+00 2209/2276 (97%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 3827.4 0.000000e+00 2198/2261 (97%)
EPI324151 A/SW/SK/11-16/2009 (A/H1N1) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3823.7 0.000000e+00 2206/2273 (97%)
EPI246073 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%)
EPI177843 A/swine/Minnesota/2728/2007 (A/H1N2) segment 2 (PB1) 3823.7 0.000000e+00 2206/2274 (97%)
EPI177840 A/swine/Minnesota/66743/2006 (A/H1N2) segment 2 (PB1) 3823.7 0.000000e+00 2206/2274 (97%)
EPI302673 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2274 (96%)
EPI246065 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 2 (PB1) 3818.1 0.000000e+00 2206/2275 (96%)
EPI177839 A/swine/Minnesota/64585/2006 (A/H1N2) segment 2 (PB1) 3818.1 0.000000e+00 2206/2275 (96%)
EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2274 (96%)
EPI177835 A/swine/Minnesota/761/2007 (A/H3N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2274 (96%)
EPI246057 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 2 (PB1) 3814.5 0.000000e+00 2205/2275 (96%)
EPI337340 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3812.6 0.000000e+00 2206/2276 (96%)

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Full sequences facillitate phylogenentic analysis, which clearly shows that A/Maine/06/2010 is the same general lineage as the 2011 sequences, but is a VERY clear drift variant and may be typable. Moreover, this lineage is forming multiple branches linked to rapid evolution.

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Although the collection date for A/Maine/06/2011 was October 10, 2011, its evolution was earlier than the 2011 sequences from Indiana and Pennsylvania, signaling more trH3N2 in humans.

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Week 41 MMWR does not contain Maine trH3N2

http://wonder.cdc.gov/mmwr/mmwr_reps.as ... wr_table=1

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Novel influenza A infection virus *** - 6 0 4 43,774 2 4 NN

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Although the CDC is to be commended for the rapid release (7 days) of the full sequences from the October 10, isolate from Maine, the absence of this cases from tomorrow's week 41 report raises concerns that the number of case is significantly higher than the one case (8M) represented by the CDC's deposit at GISAID.

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