Rhiza Labs FluTracker Forum

EPI291873 A/South Dakota/03/2008 (A/H1N1) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%)
EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%)
EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%)
EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%)
EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%)
EPI281221 A/swine/Minnesota/02093/2008 (A/H1N1) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%)
EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%)
EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%)
EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)
EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI222678 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI222655 A/swine/Minnesota/1145/2007 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI168649 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI158872 A/turkey/MN/366767/2005 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI323280 A/swine/Minnesota/7931/2007 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI323266 A/swine/Minnesota/66853/2006 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI323257 A/swine/Minnesota/1300/2007 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI291803 A/Iowa/05/2007 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 817/824 (99%)
EPI291792 A/Iowa/01/2006 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI281225 A/swine/Minnesota/02053/2008 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI225765 A/swine/Minnesota/SG242/2006 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI225763 A/swine/Minnesota/D06-28374.35/2006 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI291826 A/Minnesota/03/2008 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI291795 A/Iowa/02/2009 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%)
EPI281220 A/swine/Minnesota/02011/2008 (A/H1N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI323999 A/swine/QC/1488-2/2009 (A/H1N1) segment 8 (NS) 1474.7 0.000000e+00 823/838 (98%)
EPI324047 A/swine/QC/1697-1/2009 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI324039 A/swine/QC/1695-3/2009 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI314675 A/swine/QC/414/2009 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 825/839 (98%)
EPI291881 A/Texas/14/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI281216 A/swine/Nebraska/02013/2008 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI222659 A/swine/Minnesota/D07-022114/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 808/814 (99%)
EPI222648 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 825/839 (98%)
EPI15030 A/SW/IN/14810-S/01 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI15028 A/SW/IN/14810-T/01 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI323982 A/swine/QC/398/2009 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI314639 A/swine/QC/382/2009 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI314631 A/swine/QC/2108-2/2009 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291960 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI225761 A/swine/Minnesota/D06-058068/2006 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI184452 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI182827 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI128353 A/Ontario/1252/2007 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI225762 A/swine/Minnesota/D06-2817/2006 (A/H1N1) segment 8 (NS) 1461.8 0.000000e+00 807/815 (99%)
EPI335025 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI291952 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI222660 A/swine/Minnesota/D07-031231.3/2007 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI164075 A/swine/Korea/CAS09/2006 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI312709 A/swine/North Carolina/239108/2010 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI291963 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI227558 A/swine/North Carolina/D05-25464/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 805/814 (98%)
EPI227556 A/swine/Minnesota/D05-042978/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 805/814 (98%)
EPI222686 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI220936 A/swine/Texas/050625/2008 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164074 A/swine/Korea/CAS07/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164073 A/swine/Korea/CAN04/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164062 A/swine/Korea/CAS08/2005 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI25405 A/turkey/North Carolina/12344/03 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI9401 A/Swine/Ohio/891/01 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI323974 A/swine/QC/370/2009 (A/H1N1) segment 8 (NS) 1452.6 0.000000e+00 821/839 (97%)
EPI225764 A/swine/Minnesota/SG238/2006 (A/H1N1) segment 8 (NS) 1450.7 0.000000e+00 805/815 (98%)
EPI314683 A/swine/QC/1840-2/2009 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI281219 A/swine/Missouri/02060/2008 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI246079 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI246071 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI225759 A/swine/Minnesota/D06-043631/2006 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 804/814 (98%)
EPI222665 A/swine/Minnesota/SG237/2007 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 804/814 (98%)
EPI222658 A/swine/Minnesota/D07-003336/2007 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 804/814 (98%)
EPI220928 A/swine/Texas/050593/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220895 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220871 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220855 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220839 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220831 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220823 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220815 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220807 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220799 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220791 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI220775 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI219372 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164061 A/swine/Korea/CAN01/2004 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI15276 A/Swine/Korea/CY02/02 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI255765 A/swine/MN/48683/2002 (A/H1N1) segment 8 (NS) 1447.0 0.000000e+00 819/837 (97%)
EPI225760 A/swine/Minnesota/D06-054782/2006 (A/H3N2) segment 8 (NS) 1445.2 0.000000e+00 804/815 (98%)
EPI220743 A/swine/Illinois/D08-039220/2008 (A/H1N1) segment 8 (NS) 1445.2 0.000000e+00 819/838 (97%)
EPI327283 A/swine/Texas/4199-2/1998 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)

_________________
www.twitter.com/hniman

Isolate name: A/Iowa/05/2007
Isolate ID: EPI_ISL_83269
Passage details/history: X2
Type: A / H1N1
Lineage: unknown
Sample information
Collection date: 2007-11-29
Host Human
Additional host information:
Zip code:
Patient status:
Last vaccinated:
In-vivo pathogenicity test:
Location: United States / Iowa
Additional location information: USA
Patient age: 2 Year(s)
Gender: Male

Human case of H1N1 triple reassortant Swine-origin influenza virus

_________________
www.twitter.com/hniman

EPI291807 A/Iowa/05/2007 (A/H1N1) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI291877 A/South Dakota/03/2008 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI124042 A/swine/Iowa/00239/2004 (A/H1N1) segment 4 (HA) 3048.1 0.000000e+00 1684/1701 (99%)
EPI280410 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 4 (HA) 3031.5 0.000000e+00 1681/1701 (98%)
EPI178946 A/Iowa/01/2006 (A/H1N1) segment 4 (HA) 3009.3 0.000000e+00 1671/1692 (98%)
EPI255761 A/swine/MN/48683/2002 (A/H1N1) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%)
EPI226734 A/Iowa/CEID23/2005 (A/H1N1) segment 4 (HA) 2974.2 0.000000e+00 1670/1700 (98%)
EPI220545 A/ferret/Iowa/15828B/2008 (A/H1N1) segment 4 (HA) 2970.5 0.000000e+00 1670/1701 (98%)
EPI163982 A/swine/Korea/CAS08/2005 (A/H1N1) segment 4 (HA) 2970.5 0.000000e+00 1670/1701 (98%)
EPI292019 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 4 (HA) 2963.1 0.000000e+00 1668/1701 (98%)
EPI292014 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 4 (HA) 2959.5 0.000000e+00 1668/1701 (98%)
EPI292007 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 4 (HA) 2959.5 0.000000e+00 1668/1701 (98%)
EPI291885 A/Texas/14/2008 (A/H1N1) segment 4 (HA) 2948.4 0.000000e+00 1666/1701 (97%)
EPI292018 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 4 (HA) 2946.5 0.000000e+00 1665/1701 (97%)
EPI292009 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 4 (HA) 2942.8 0.000000e+00 1665/1701 (97%)
EPI289653 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 4 (HA) 2942.8 0.000000e+00 1665/1701 (97%)
EPI163981 A/swine/Korea/CAN01/2004 (A/H1N1) segment 4 (HA) 2942.8 0.000000e+00 1665/1701 (97%)
EPI291846 A/Minnesota/10/2009 (A/H1N1) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI255754 A/swine/MN/23506/2009 (A/H1N1) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI335053 A/swine/Minnesota/6998/2003 (A/H1N1) segment 4 (HA) 2933.6 0.000000e+00 1663/1701 (97%)
EPI292008 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 4 (HA) 2926.2 0.000000e+00 1662/1701 (97%)
EPI281263 A/swine/Iowa/02096/2008 (A/H1N1) segment 4 (HA) 2918.8 0.000000e+00 1659/1698 (97%)
EPI289656 A/swine/Iowa/46519-4/2008 (A/H1N1) segment 4 (HA) 2911.4 0.000000e+00 1662/1704 (97%)
EPI291830 A/Minnesota/03/2008 (A/H1N1) segment 4 (HA) 2902.2 0.000000e+00 1627/1655 (98%)
EPI289650 A/swine/Iowa/46519-2/2008 (A/H1N1) segment 4 (HA) 2893.0 0.000000e+00 1657/1702 (97%)
EPI9345 A/Swine/Iowa/930/01 (A/H1N2) segment 4 (HA) 2887.4 0.000000e+00 1655/1701 (97%)
EPI14856 A/SW/MO/1877/01 (A/H1N2) segment 4 (HA) 2881.9 0.000000e+00 1654/1701 (97%)
EPI230034 A/swine/Wisconsin/R33f/2001 (A/H1N2) segment 4 (HA) 2876.4 0.000000e+00 1653/1701 (97%)
EPI324859 A/swine/Minnesota/A01049462/2011 (A/H1N1) segment 4 (HA) 2870.8 0.000000e+00 1652/1701 (97%)
EPI270057 A/swine/Iowa/03031/2010 (A/H1N1) segment 4 (HA) 2870.8 0.000000e+00 1653/1702 (97%)
EPI292017 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 4 (HA) 2835.7 0.000000e+00 1646/1701 (96%)
EPI15268 A/Swine/Korea/CY02/02 (A/H1N2) segment 4 (HA) 2832.0 0.000000e+00 1645/1701 (96%)
EPI292015 A/swine/Iowa/H02HE4/2002 (A/H1N1) segment 4 (HA) 2813.6 0.000000e+00 1642/1701 (96%)
EPI312649 A/swine/Indiana/240218/2010 (A/H1N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI281264 A/swine/Nebraska/02013/2008 (A/H1N1) segment 4 (HA) 2795.1 0.000000e+00 1636/1696 (96%)
EPI292012 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 4 (HA) 2782.2 0.000000e+00 1637/1702 (96%)
EPI14850 A/SW/CO/17871/01 (A/H1N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI124036 A/swine/North Carolina/36883/2002 (A/H1N1) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI17873 A/duck/NC/91347/01 (A/H1N2) segment 4 (HA) 2737.9 0.000000e+00 1630/1703 (95%)
EPI9343 A/Swine/Minnesota/55551/00 (A/H1N2) segment 4 (HA) 2726.8 0.000000e+00 1628/1703 (95%)
EPI180207 A/swine/North Carolina/29698/2003 (A/H1) segment 4 (HA) 2699.1 0.000000e+00 1623/1703 (95%)
EPI335061 A/swine/North Carolina/47834/2000 (A/H1N1) segment 4 (HA) 2693.5 0.000000e+00 1623/1704 (95%)
EPI281265 A/swine/North Carolina/02084/2008 (A/H1N1) segment 4 (HA) 2688.0 0.000000e+00 1507/1533 (98%)
EPI180197 A/swine/North Carolina/29482/2003 (A/H1) segment 4 (HA) 2675.1 0.000000e+00 1617/1702 (95%)
EPI180214 A/swine/North Carolina/9675/2003 (A/H1) segment 4 (HA) 2671.4 0.000000e+00 1617/1702 (95%)
EPI180199 A/swine/North Carolina/37895/2003 (A/H1) segment 4 (HA) 2662.1 0.000000e+00 1616/1703 (94%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 2654.8 0.000000e+00 1616/1704 (94%)
EPI292010 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 4 (HA) 2649.2 0.000000e+00 1616/1705 (94%)
EPI165697 A/swine/Memphis/1/1990 (A/H1N1) segment 4 (HA) 2632.6 0.000000e+00 1614/1706 (94%)
EPI180208 A/swine/North Carolina/36681/2003 (A/H1) segment 4 (HA) 2627.1 0.000000e+00 1602/1693 (94%)
EPI180200 A/swine/North Carolina/41621/2003 (A/H1) segment 4 (HA) 2617.8 0.000000e+00 1607/1702 (94%)
EPI77673 A/swine/California/T9001707/1991 (A/H1N1) segment 4 (HA) 2610.4 0.000000e+00 1610/1706 (94%)
EPI62860 A/swine/Maryland/23239/1991 (A/H1N1) segment 4 (HA) 2610.4 0.000000e+00 1610/1706 (94%)
EPI180198 A/swine/North Carolina/35279/2003 (A/H1) segment 4 (HA) 2608.6 0.000000e+00 1604/1698 (94%)
EPI73834 A/swine/Iowa/24297/1991 (A/H1N1) segment 4 (HA) 2599.4 0.000000e+00 1608/1706 (94%)
EPI311021 A/swine/Hong Kong/1286/1993 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1607/1706 (94%)
EPI158914 A/turkey/IA/21089-3/1992 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1608/1707 (94%)
EPI311053 A/swine/Hong Kong/1795/1994 (A/H1N1) segment 4 (HA) 2582.7 0.000000e+00 1605/1706 (94%)
EPI311005 A/swine/Hong Kong/1223/1993 (A/H1N1) segment 4 (HA) 2582.7 0.000000e+00 1606/1707 (94%)
EPI310909 A/swine/Hong Kong/128/1993 (A/H1N1) segment 4 (HA) 2582.7 0.000000e+00 1606/1707 (94%)
EPI313040 A/swine/Hong Kong/2461/1994 (A/H1N1) segment 4 (HA) 2579.0 0.000000e+00 1606/1708 (94%)
EPI313032 A/swine/Hong Kong/2445/1994 (A/H1N1) segment 4 (HA) 2579.0 0.000000e+00 1606/1708 (94%)
EPI311045 A/swine/Hong Kong/1767/1994 (A/H1N1) segment 4 (HA) 2577.2 0.000000e+00 1605/1707 (94%)
EPI311029 A/swine/Hong Kong/1290/1993 (A/H1N1) segment 4 (HA) 2577.2 0.000000e+00 1605/1707 (94%)
EPI311061 A/swine/Hong Kong/1845/1994 (A/H1N1) segment 4 (HA) 2575.3 0.000000e+00 1602/1703 (94%)
EPI313016 A/swine/Hong Kong/2422/1994 (A/H1N1) segment 4 (HA) 2573.5 0.000000e+00 1605/1708 (93%)
EPI311069 A/swine/Hong Kong/1937/1994 (A/H1N1) segment 4 (HA) 2573.5 0.000000e+00 1605/1708 (93%)
EPI310997 A/swine/Hong Kong/1219/1993 (A/H1N1) segment 4 (HA) 2573.5 0.000000e+00 1604/1707 (93%)
EPI310925 A/swine/Hong Kong/249/1993 (A/H1N1) segment 4 (HA) 2571.7 0.000000e+00 1604/1707 (93%)
EPI313080 A/swine/Hong Kong/2603/1994 (A/H1N1) segment 4 (HA) 2569.8 0.000000e+00 1602/1704 (94%)
EPI313064 A/swine/Hong Kong/2518/1994 (A/H1N1) segment 4 (HA) 2568.0 0.000000e+00 1604/1708 (93%)
EPI313056 A/swine/Hong Kong/2507/1994 (A/H1N1) segment 4 (HA) 2568.0 0.000000e+00 1604/1708 (93%)
EPI313024 A/swine/Hong Kong/2428/1994 (A/H1N1) segment 4 (HA) 2568.0 0.000000e+00 1604/1708 (93%)
EPI313008 A/swine/Hong Kong/2161/1994 (A/H1N1) segment 4 (HA) 2568.0 0.000000e+00 1604/1708 (93%)
EPI310917 A/swine/Hong Kong/158/1993 (A/H1N1) segment 4 (HA) 2568.0 0.000000e+00 1603/1707 (93%)
EPI313072 A/swine/Hong Kong/2592/1994 (A/H1N1) segment 4 (HA) 2564.3 0.000000e+00 1601/1704 (93%)
EPI313048 A/swine/Hong Kong/2503/1994 (A/H1N1) segment 4 (HA) 2564.3 0.000000e+00 1601/1704 (93%)
EPI311037 A/swine/Hong Kong/1374/1993 (A/H1N1) segment 4 (HA) 2547.7 0.000000e+00 1599/1705 (93%)
EPI180206 A/swine/North Carolina/26762/2003 (A/H1) segment 4 (HA) 2547.7 0.000000e+00 1596/1704 (93%)
EPI311013 A/swine/Hong Kong/835/1993 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1601/1709 (93%)
EPI310981 A/swine/Hong Kong/813/1993 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1601/1709 (93%)
EPI310949 A/swine/Hong Kong/574/1993 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1601/1709 (93%)
EPI310941 A/swine/Hong Kong/347/1993 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1601/1709 (93%)
EPI310933 A/swine/Hong Kong/299/1993 (A/H1N1) segment 4 (HA) 2544.0 0.000000e+00 1601/1709 (93%)
EPI310989 A/swine/Hong Kong/829/1993 (A/H1N1) segment 4 (HA) 2540.3 0.000000e+00 1600/1709 (93%)
EPI291704 A/Oklahoma/11/1990 (A/H1N1) segment 4 (HA) 2538.4 0.000000e+00 1597/1706 (93%)
EPI9339 A/Swine/North Carolina/98225/01 (A/H1N2) segment 4 (HA) 2538.4 0.000000e+00 1596/1705 (93%)
EPI177542 A/swine/Hong Kong/103/1993 (A/H1N1) segment 4 (HA) 2532.9 0.000000e+00 1566/1661 (94%)
EPI62521 A/swine/Iowa/17672/1988 (A/H1N1) segment 4 (HA) 2527.3 0.000000e+00 1596/1707 (93%)
EPI310965 A/swine/Hong Kong/172/1993 (A/H1N1) segment 4 (HA) 2523.6 0.000000e+00 1564/1661 (94%)
EPI240273 A/turkey/NC/19762/1988 (A/H1N1) segment 4 (HA) 2516.3 0.000000e+00 1594/1707 (93%)
EPI239970 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2516.3 0.000000e+00 1593/1706 (93%)
EPI178968 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2516.3 0.000000e+00 1593/1706 (93%)
EPI130937 A/WI/4755/1994 (A/H1N1 seasonal) segment 4 (HA) 2516.3 0.000000e+00 1593/1706 (93%)
EPI130935 A/WI/4754/1994 (A/H1N1 seasonal) segment 4 (HA) 2516.3 0.000000e+00 1593/1706 (93%)
EPI178960 A/swine/Wisconsin/1915/1988 (A/H1N1) segment 4 (HA) 2510.7 0.000000e+00 1592/1706 (93%)
EPI165951 A/turkey/NC/17026/1988 (A/H1N1) segment 4 (HA) 2510.7 0.000000e+00 1593/1707 (93%)
EPI62748 A/swine/Wisconsin/1915/1988 (A/H1N1) segment 4 (HA) 2510.7 0.000000e+00 1592/1706 (93%)
EPI130503 A/swine/IN/1726/1988 (A/H1N1) segment 4 (HA) 2505.2 0.000000e+00 1591/1706 (93%)
EPI63955 A/swine/Iowa/31483/1988 (A/H1N1) segment 4 (HA) 2499.6 0.000000e+00 1591/1707 (93%)

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LOCUS FJ986618 1692 bp cRNA linear VRL 08-MAY-2009
DEFINITION Influenza A virus (A/Iowa/01/2006(H1N1)) segment 4 hemagglutinin
(HA) gene, partial cds.
ACCESSION FJ986618
VERSION FJ986618.1 GI:229473297
KEYWORDS .
SOURCE Influenza A virus (A/Iowa/01/2006(H1N1))
ORGANISM Influenza A virus (A/Iowa/01/2006(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1692)
AUTHORS Shinde,V., Bridges,C.B., Uyeki,T.M., Shu,B., Balish,A., Xu,X.,
Lindstrom,S., Gubareva,L.V., Deyde,V., Garten,R.J., Harris,M.,
Gerber,S., Vagasky,S., Smith,F., Pascoe,N., Martin,K., Dufficy,D.,
Ritger,K., Conover,C., Quinlisk,P., Klimov,A., Bresee,J.S. and
Finelli,L.
TITLE Triple-reassortant swine influenza A (H1) in humans in the United
States, 2005-2009
JOURNAL N. Engl. J. Med. 360 (25), 2616-2625 (2009)
PUBMED 19423871
REMARK Erratum:[N Engl J Med. 2009 Jul 2;361(1):102]
REFERENCE 2 (bases 1 to 1692)
AUTHORS Shinde,V., Bridges,C.B., Uyeki,T., Shu,B., Balish,A., Xu,X.,
Lindstrom,S., Gubareva,L., Garten,R.J., Deyde,D., Harris,M.,
Gerber,S., Vagoski,S., Smith,F., Pascoe,N., Martin,K., Dufficy,D.,
Ritger,K., Conover,C., Quinlisk,P., Klimov,A., Bresee,J. and
Finelli,L.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2009) WHO Collaborating Center for Surveillance,
Epidemiology and Control of Influenza, Influenza Division, Centers
for Disease Control and Prevention, Atlanta, 1600 Clifton Road,
N.E., Atlanta, GA 30333, USA
COMMENT ##FluData-START##
Organism Name :: Influenza A virus (A/Iowa/01/2006 (H1N1))
Country :: USA
District :: Iowa
Collection Date :: 8-Nov-2006
Host :: Human
Subtype :: H1N1
Passage History :: C1
Age :: 5
Gender :: F
special_notes :: Human infection with swine triple reassortant
H1N1
##FluData-END##
FEATURES Location/Qualifiers
source 1..1692
/organism="Influenza A virus (A/Iowa/01/2006(H1N1))"
/mol_type="viral cRNA"
/strain="A/Iowa/01/2006"
/serotype="H1N1"
/host="Homo sapiens; age 5; gender F"
/db_xref="taxon:643702"
/segment="4"
/country="USA: Iowa"
/collection_date="08-Nov-2006"
gene <1..1692
/gene="HA"
CDS <1..1692
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACQ73201.1"
/db_xref="GI:229473298"
/translation="IIVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSV
NLLENKHDGKLCKLRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNG
TCYPGDFINYEELREHLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGANSFYR
NLIWLVKKGNSYPKLSKSYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSS
KYSKRFKPEIAARPKVRNQAGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSG
SGIIVSDAPVHDCNTTCQTPKGAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRN
IPSIQSRGLFGAIAGFLEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNK
VNSIIEKMNTQFTAVGKEFNQLEKRIESLNNKVDDGFLDIWTYNAEMLVLLENERTLD
YHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAK
LNREEIDGVKLESARIYQILAIYSTVASSLVLLVSLGAVSFWMCSNGSLQCRICI"
ORIGIN
1 ataatagtag tcttgctata tacatttgca actgcagatg ctgacacatt atgtataggc
61 tatcatgcaa ataattcaac tgacactgtt gacacagtac tagaaaagaa tgtaacagta
121 acacactctg ttaaccttct agaaaacaag catgacggga aactatgtaa actaagaggg
181 gtagccccat tgcatttggg taaatgtaac attgctggat ggctcttggg aaacccagag
241 tgtgaatcac tattcacagc aagctcatgg tcctacatag tggaaacgcc taattcagac
301 aatgggacat gttacccagg agatttcatc aattatgagg agctaagaga gcatttgagc
361 tctgtgtcat catttgaaag gtttgagata ttccccaagg ctaattcatg gcccaaccat
421 gatacgaata agggggtaac ggcagcatgt ccttatgctg gagcaaacag cttttacaga
481 aatttaatat ggctagtaaa aaaaggaaat tcatacccaa agctcagcaa atcctacatt
541 aacaataaga agaaggaagt ccttgtgata tggggcatcc accatccacc taccagtact
601 gaccaacaaa ctctctacca gaatgcagat gcctatgttt ttgtgggatc atcaaaatac
661 agcaaaagat tcaagccaga aatagcagca agacccaagg tgaggaatca agcaggaaga
721 atgaactatt actggacact aatagaacct ggagacacaa taacattcga agcaactgga
781 aatctagtgg taccaagata tgccttcgca atgaaaagag gctctggatc tggtattatc
841 gtttcagatg caccagtcca cgattgtaat acgacttgtc aaacacccaa aggtgctata
901 aacaccagcc ttccatttca gaatatacat ccagtcacaa ttggagaatg tccaaaatat
961 gtcaaaagca caaaattgag gatggctaca ggactaagaa atatcccgtc tattcaatca
1021 agaggcctat ttggggccat tgctggcttc cttgaagggg ggtggacagg aatgatagat
1081 ggatggtacg gttaccacca tcaaaatgag cagggatcag gatatgcagc cgaccaaaag
1141 agcacacaga atgccattga cgggatcact aacaaagtaa attctattat tgaaaagatg
1201 aacacacaat tcacagcagt gggtaaagaa ttcaaccaat tggaaaaaag aatagagagt
1261 ttaaacaata aggtcgatga tgggttccta gatatttgga cttacaatgc cgaaatgctg
1321 gttctattgg aaaatgaaag aactctggat tatcacgatt caaatgtgaa gaacctatat
1381 gaaaaagtaa gaagccagct aaaaaacaat gccaaagaaa ttggaaatgg ctgctttgaa
1441 ttttaccaca aatgcgataa cacgtgcatg gagagtgtca aaaatgggac ttatgattac
1501 ccaaaatact cagaagaagc aaagctaaat agagaggaga tagatggggt aaagctggaa
1561 tcagcaagga tttaccagat tttggcgatc tattcaactg tcgccagctc attggtactg
1621 ttagtctctc tgggggcagt cagtttctgg atgtgctcca atgggtcttt acagtgcaga
1681 atatgtatct aa

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Table 1. Demographic and Exposure Characteristics of 11 Patients Infected with Triple-Reassortant Swine Influenza A (H1) Viruses.
Patient
No. Age Sex
State of
Residence
Date of
Illness Onset
Estimated
Incubation Period Exposure*
Ill Swine
Present
1 17 yr M WI Dec. 2005 3 days Butchered a pig (direct contact) Not known
2 7 yr M MO Jan. 2006 Not known Reported no contact with a pig
(unknown contact)
Not known
3 4 yr F IA Nov. 2006 7–10 days Had contact with patient with suspected
case of swine influenza
(epidemiologically linked contact)
Yes
4 10 yr F OH Aug. 2007 3–4 days Exhibited swine at fair, handled pigs
(direct contact)
Yes
5 36 yr M OH Aug. 2007 3–4 days Exhibited swine at fair, handled pigs
(direct contact)
Yes
6 48 yr F IL Aug. 2007 7 days Visited fair, did not stop at pigpen
(near vicinity)
Yes
7 16 mo M MI Aug. 2007 7 days Visited fair, came within 1 m of pigs
(close proximity)
Yes
8 2 yr M IA Nov. 2007 1–10 days Lived on swine farm, came within
1 m of pigs (close proximity)
Yes
9 26 yr F MN Jan. 2008 9 days Visited live-animal market, came within
1 m of pigpen (close proximity)
Not known
10 14 yr M TX Oct. 2008 3 days Visited a swine farm, brought home
and handled a pig (direct contact)
Yes
11 3 yr M IA Feb. 2009 1–10 days Visited swine farm owned by his family,
touched pigs (direct contact)
Yes
* Direct contact refers to touching or handling a pig; close proximity refers to standing within 1.83 m (6 ft) of a pig, without known direct contact;
near vicinity refers to presence of pigs on the premises but not in close proximity; epidemiologically linked refers to a person who is
epidemiologically linked to another person with a confirmed or suspected infection; and unknown refers to unknown contact or unavailable
contact information.
http://www.nejm.org/doi/pdf/10.1056/NEJMoa0903812

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Note that M gene in South Dakota isolate is close to other trH1N1 as well as trH3N2 prior to acquistion of pandemic H1N1 M.

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LOCUS DQ889689 1701 bp cRNA linear VRL 12-DEC-2007
DEFINITION Influenza A virus (A/Iowa/CEID23/2005(H1N1)) hemagglutinin (HA)
gene, complete cds.
ACCESSION DQ889689
VERSION DQ889689.1 GI:112456301
KEYWORDS .
SOURCE Influenza A virus (A/Iowa/CEID23/2005(H1N1))
ORGANISM Influenza A virus (A/Iowa/CEID23/2005(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Gray,G.C., McCarthy,T., Capuano,A.W., Setterquist,S.F., Olsen,C.W.
and Alavanja,M.C.
TITLE Swine workers and swine influenza virus infections
JOURNAL Emerging Infect. Dis. 13 (12), 1871-1878 (2007)
PUBMED 18258038
REFERENCE 2 (bases 1 to 1701)
AUTHORS Gray,G.C., McCarthy,T., Capuano,A.W., Setterquist,S.F., Olsen,C.W.,
Alavanja,M.C. and Lynch,C.F.
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2006) Center for Emerging Infectious Diseases
Epidemiology Department, University of Iowa College of Public
Health, Coralville, IA 52241, USA
FEATURES Location/Qualifiers
source 1..1701
/organism="Influenza A virus (A/Iowa/CEID23/2005(H1N1))"
/mol_type="viral cRNA"
/strain="A/Iowa/CEID23/2005"
/serotype="H1N1"
/db_xref="taxon:398800"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ABI19015.1"
/db_xref="GI:112456302"
/translation="MKAIIVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLENKHDGKLCKLRGIAPLHLGKCNIAGWILGNPECESLFTTSSWSYIVETPNS
DNGTCYPGDFINYEELREHLSSVSSFERFEIFPKANSWPYHDTNKGVTAACPYAGANS
FYRNLIWLVKKGNSYPKLSKSYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFV
GSSKYSKRFKPEIAARPKVRDQAGRMDYYWTLIEPGDTITFEATGNLVVPRYAFTMKR
GSGSGIIVSDAPVHDCNTTCQTPKGAINTSLPFQNIHPVTIGECPKYVKSTKLRMATG
LRNIPSIQSRGLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGI
TNKVNSIIEKMNTQFTAVGKEFSQLEKRIESLNNKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDDTCMESVKNGTYDYPKYSE
EAKLNRQEIDGVKLESARIYQILAIYSTVASSLVLLVSLGAVSFWMCSNGSLQCRICI
"
ORIGIN
1 atgaaggcaa taatagtagt tttgctatat acatttgcaa ctgcagatgc tgacacatta
61 tgtataggct atcatgcaaa taattcaact gacactgttg acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaaaacaagc atgacgggaa actatgtaaa
181 ctaagaggga tagccccatt gcatttgggt aaatgtaaca ttgctggatg gatcttggga
241 aacccagagt gtgaatcact attcacaaca agctcatggt catacatagt ggaaacgcct
301 aattcagaca atgggacatg ttacccagga gatttcatca attatgagga gctaagagag
361 catttgagct ctgtgtcatc atttgaaagg tttgagatat tccccaaggc aaattcatgg
421 ccctatcatg atacgaataa aggggtgacg gcagcatgtc cttatgctgg agcaaacagc
481 ttttacagaa atttaatatg gctagtaaaa aaaggaaatt catacccaaa gctcagtaaa
541 tcctacatta acaataagaa gaaagaagtc ctcgtgatat ggggcatcca ccatccacct
601 accagtactg accaacaaac tctctaccag aatgcagatg cttatgtttt tgtgggatca
661 tcaaaataca gcaagagatt caagccagaa atagcagcaa gacccaaggt gagggatcaa
721 gcaggaagga tggactatta ctggacacta atagaacctg gagacacaat aacattcgaa
781 gcaactggaa atctagtggt accaagatat gccttcacaa tgaaaagagg ctctggatct
841 ggtattatcg tttcagacgc accagtccac gattgtaata cgacttgtca aacacccaaa
901 ggtgctataa acaccagcct tccatttcag aatatacatc cagtcacaat tggagaatgt
961 ccaaaatatg tcaaaagcac aaaattgagg atggctacag gattaagaaa tatcccgtct
1021 attcaatcaa gaggcctatt tggggccatt gctggcttca ttgaaggggg gtggacagga
1081 atgatagatg gatggtacgg ttatcaccat caaaatgagc agggatcagg atatgcagcc
1141 gaccaaaaga gcacacagaa tgccattgac gggatcacta acaaagtaaa ttctattatt
1201 gaaaagatga acacacaatt cacagcagtg ggtaaagaat tcagccaatt ggaaaaaaga
1261 atagagagtt taaacaataa ggttgacgat ggttttctag atatttggac ttacaatgcc
1321 gaactgctgg ttctattgga aaatgaaaga actctggatt atcacgattc aaatgtgaag
1381 aacctatatg aaaaagtaag aagccagcta aaaaacaatg ccaaagaaat tggaaatggc
1441 tgctttgaat tttaccacaa atgtgatgac acgtgcatgg agagtgtcaa aaatgggact
1501 tatgattacc caaaatactc agaagaagca aagctaaata gacaggagat agatggggta
1561 aagctggaat cagcaaggat ttaccagatt ttggcgatct attcaactgt cgccagctca
1621 ttggtactgt tagtctctct aggggcagtc agtttctgga tgtgctccaa tgggtcttta
1681 cagtgcagaa tatgtatcta g

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EPI226734 A/Iowa/CEID23/2005 (A/H1N1) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI124042 A/swine/Iowa/00239/2004 (A/H1N1) segment 4 (HA) 3046.2 0.000000e+00 1683/1700 (99%)
EPI280410 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 4 (HA) 3040.7 0.000000e+00 1682/1700 (98%)
EPI255761 A/swine/MN/48683/2002 (A/H1N1) segment 4 (HA) 3001.9 0.000000e+00 1675/1700 (98%)
EPI163982 A/swine/Korea/CAS08/2005 (A/H1N1) segment 4 (HA) 2996.4 0.000000e+00 1674/1700 (98%)
EPI292007 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 4 (HA) 2979.8 0.000000e+00 1671/1700 (98%)
EPI292019 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 4 (HA) 2976.1 0.000000e+00 1670/1700 (98%)
EPI291807 A/Iowa/05/2007 (A/H1N1) segment 4 (HA) 2974.2 0.000000e+00 1670/1700 (98%)
EPI292014 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 4 (HA) 2968.7 0.000000e+00 1669/1700 (98%)
EPI163981 A/swine/Korea/CAN01/2004 (A/H1N1) segment 4 (HA) 2968.7 0.000000e+00 1669/1700 (98%)
EPI292009 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 4 (HA) 2963.1 0.000000e+00 1668/1700 (98%)
EPI292018 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 4 (HA) 2959.5 0.000000e+00 1667/1700 (98%)
EPI291877 A/South Dakota/03/2008 (A/H1N1) segment 4 (HA) 2957.6 0.000000e+00 1668/1701 (98%)
EPI335053 A/swine/Minnesota/6998/2003 (A/H1N1) segment 4 (HA) 2953.9 0.000000e+00 1666/1700 (98%)
EPI178946 A/Iowa/01/2006 (A/H1N1) segment 4 (HA) 2941.0 0.000000e+00 1658/1691 (98%)
EPI292008 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 4 (HA) 2935.4 0.000000e+00 1663/1700 (97%)
EPI220545 A/ferret/Iowa/15828B/2008 (A/H1N1) segment 4 (HA) 2907.7 0.000000e+00 1658/1700 (97%)
EPI9345 A/Swine/Iowa/930/01 (A/H1N2) segment 4 (HA) 2907.7 0.000000e+00 1659/1701 (97%)
EPI14856 A/SW/MO/1877/01 (A/H1N2) segment 4 (HA) 2896.7 0.000000e+00 1657/1701 (97%)
EPI230034 A/swine/Wisconsin/R33f/2001 (A/H1N2) segment 4 (HA) 2891.1 0.000000e+00 1656/1701 (97%)
EPI291885 A/Texas/14/2008 (A/H1N1) segment 4 (HA) 2880.0 0.000000e+00 1653/1700 (97%)
EPI289653 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 4 (HA) 2874.5 0.000000e+00 1652/1700 (97%)
EPI291846 A/Minnesota/10/2009 (A/H1N1) segment 4 (HA) 2869.0 0.000000e+00 1651/1700 (97%)
EPI255754 A/swine/MN/23506/2009 (A/H1N1) segment 4 (HA) 2869.0 0.000000e+00 1651/1700 (97%)
EPI292017 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 4 (HA) 2854.2 0.000000e+00 1651/1703 (96%)
EPI289656 A/swine/Iowa/46519-4/2008 (A/H1N1) segment 4 (HA) 2854.2 0.000000e+00 1653/1705 (96%)
EPI15268 A/Swine/Korea/CY02/02 (A/H1N2) segment 4 (HA) 2841.3 0.000000e+00 1648/1702 (96%)
EPI291830 A/Minnesota/03/2008 (A/H1N1) segment 4 (HA) 2839.4 0.000000e+00 1615/1654 (97%)
EPI292015 A/swine/Iowa/H02HE4/2002 (A/H1N1) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI281263 A/swine/Iowa/02096/2008 (A/H1N1) segment 4 (HA) 2830.2 0.000000e+00 1643/1698 (96%)
EPI289650 A/swine/Iowa/46519-2/2008 (A/H1N1) segment 4 (HA) 2824.6 0.000000e+00 1644/1701 (96%)
EPI270057 A/swine/Iowa/03031/2010 (A/H1N1) segment 4 (HA) 2813.6 0.000000e+00 1643/1702 (96%)
EPI324859 A/swine/Minnesota/A01049462/2011 (A/H1N1) segment 4 (HA) 2802.5 0.000000e+00 1639/1700 (96%)
EPI312649 A/swine/Indiana/240218/2010 (A/H1N2) segment 4 (HA) 2796.9 0.000000e+00 1639/1701 (96%)
EPI292012 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 4 (HA) 2796.9 0.000000e+00 1640/1702 (96%)
EPI14850 A/SW/CO/17871/01 (A/H1N2) segment 4 (HA) 2791.4 0.000000e+00 1640/1703 (96%)
EPI124036 A/swine/North Carolina/36883/2002 (A/H1N1) segment 4 (HA) 2769.2 0.000000e+00 1636/1703 (96%)
EPI17873 A/duck/NC/91347/01 (A/H1N2) segment 4 (HA) 2763.7 0.000000e+00 1634/1702 (96%)
EPI180207 A/swine/North Carolina/29698/2003 (A/H1) segment 4 (HA) 2736.0 0.000000e+00 1629/1702 (95%)
EPI9343 A/Swine/Minnesota/55551/00 (A/H1N2) segment 4 (HA) 2736.0 0.000000e+00 1628/1700 (95%)
EPI281264 A/swine/Nebraska/02013/2008 (A/H1N1) segment 4 (HA) 2728.6 0.000000e+00 1624/1696 (95%)
EPI335061 A/swine/North Carolina/47834/2000 (A/H1N1) segment 4 (HA) 2719.4 0.000000e+00 1627/1703 (95%)
EPI180214 A/swine/North Carolina/9675/2003 (A/H1) segment 4 (HA) 2708.3 0.000000e+00 1623/1701 (95%)
EPI180197 A/swine/North Carolina/29482/2003 (A/H1) segment 4 (HA) 2706.5 0.000000e+00 1620/1698 (95%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 2697.2 0.000000e+00 1623/1703 (95%)
EPI180199 A/swine/North Carolina/37895/2003 (A/H1) segment 4 (HA) 2688.0 0.000000e+00 1620/1702 (95%)
EPI292010 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 4 (HA) 2675.1 0.000000e+00 1620/1704 (95%)
EPI180208 A/swine/North Carolina/36681/2003 (A/H1) segment 4 (HA) 2671.4 0.000000e+00 1610/1693 (95%)
EPI180198 A/swine/North Carolina/35279/2003 (A/H1) segment 4 (HA) 2652.9 0.000000e+00 1611/1697 (94%)
EPI165697 A/swine/Memphis/1/1990 (A/H1N1) segment 4 (HA) 2647.4 0.000000e+00 1612/1700 (94%)
EPI180200 A/swine/North Carolina/41621/2003 (A/H1) segment 4 (HA) 2643.7 0.000000e+00 1609/1698 (94%)
EPI281265 A/swine/North Carolina/02084/2008 (A/H1N1) segment 4 (HA) 2638.1 0.000000e+00 1499/1534 (97%)
EPI77673 A/swine/California/T9001707/1991 (A/H1N1) segment 4 (HA) 2636.3 0.000000e+00 1610/1700 (94%)
EPI62860 A/swine/Maryland/23239/1991 (A/H1N1) segment 4 (HA) 2625.2 0.000000e+00 1608/1700 (94%)
EPI158914 A/turkey/IA/21089-3/1992 (A/H1N1) segment 4 (HA) 2614.1 0.000000e+00 1607/1701 (94%)
EPI73834 A/swine/Iowa/24297/1991 (A/H1N1) segment 4 (HA) 2614.1 0.000000e+00 1606/1700 (94%)
EPI311021 A/swine/Hong Kong/1286/1993 (A/H1N1) segment 4 (HA) 2608.6 0.000000e+00 1604/1699 (94%)
EPI313016 A/swine/Hong Kong/2422/1994 (A/H1N1) segment 4 (HA) 2599.4 0.000000e+00 1604/1701 (94%)
EPI311069 A/swine/Hong Kong/1937/1994 (A/H1N1) segment 4 (HA) 2599.4 0.000000e+00 1604/1701 (94%)
EPI313080 A/swine/Hong Kong/2603/1994 (A/H1N1) segment 4 (HA) 2597.5 0.000000e+00 1604/1701 (94%)
EPI311053 A/swine/Hong Kong/1795/1994 (A/H1N1) segment 4 (HA) 2597.5 0.000000e+00 1602/1699 (94%)
EPI311005 A/swine/Hong Kong/1223/1993 (A/H1N1) segment 4 (HA) 2597.5 0.000000e+00 1603/1700 (94%)
EPI310909 A/swine/Hong Kong/128/1993 (A/H1N1) segment 4 (HA) 2597.5 0.000000e+00 1603/1700 (94%)
EPI313064 A/swine/Hong Kong/2518/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313056 A/swine/Hong Kong/2507/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313040 A/swine/Hong Kong/2461/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313032 A/swine/Hong Kong/2445/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313024 A/swine/Hong Kong/2428/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313008 A/swine/Hong Kong/2161/1994 (A/H1N1) segment 4 (HA) 2593.8 0.000000e+00 1603/1701 (94%)
EPI313072 A/swine/Hong Kong/2592/1994 (A/H1N1) segment 4 (HA) 2592.0 0.000000e+00 1603/1701 (94%)
EPI313048 A/swine/Hong Kong/2503/1994 (A/H1N1) segment 4 (HA) 2592.0 0.000000e+00 1603/1701 (94%)
EPI311061 A/swine/Hong Kong/1845/1994 (A/H1N1) segment 4 (HA) 2592.0 0.000000e+00 1602/1700 (94%)
EPI311045 A/swine/Hong Kong/1767/1994 (A/H1N1) segment 4 (HA) 2592.0 0.000000e+00 1602/1700 (94%)
EPI311029 A/swine/Hong Kong/1290/1993 (A/H1N1) segment 4 (HA) 2592.0 0.000000e+00 1602/1700 (94%)
EPI310997 A/swine/Hong Kong/1219/1993 (A/H1N1) segment 4 (HA) 2588.3 0.000000e+00 1601/1700 (94%)
EPI310925 A/swine/Hong Kong/249/1993 (A/H1N1) segment 4 (HA) 2586.4 0.000000e+00 1601/1700 (94%)
EPI310917 A/swine/Hong Kong/158/1993 (A/H1N1) segment 4 (HA) 2582.7 0.000000e+00 1600/1700 (94%)
EPI311037 A/swine/Hong Kong/1374/1993 (A/H1N1) segment 4 (HA) 2564.3 0.000000e+00 1598/1701 (93%)
EPI311013 A/swine/Hong Kong/835/1993 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1597/1701 (93%)
EPI310981 A/swine/Hong Kong/813/1993 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1597/1701 (93%)
EPI310949 A/swine/Hong Kong/574/1993 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1597/1701 (93%)
EPI310941 A/swine/Hong Kong/347/1993 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1597/1701 (93%)
EPI310933 A/swine/Hong Kong/299/1993 (A/H1N1) segment 4 (HA) 2558.7 0.000000e+00 1597/1701 (93%)
EPI180206 A/swine/North Carolina/26762/2003 (A/H1) segment 4 (HA) 2556.9 0.000000e+00 1593/1698 (93%)
EPI310989 A/swine/Hong Kong/829/1993 (A/H1N1) segment 4 (HA) 2555.0 0.000000e+00 1596/1701 (93%)
EPI291704 A/Oklahoma/11/1990 (A/H1N1) segment 4 (HA) 2553.2 0.000000e+00 1595/1700 (93%)
EPI177542 A/swine/Hong Kong/103/1993 (A/H1N1) segment 4 (HA) 2553.2 0.000000e+00 1564/1654 (94%)
EPI9339 A/Swine/North Carolina/98225/01 (A/H1N2) segment 4 (HA) 2553.2 0.000000e+00 1599/1705 (93%)
EPI310965 A/swine/Hong Kong/172/1993 (A/H1N1) segment 4 (HA) 2544.0 0.000000e+00 1562/1654 (94%)
EPI62521 A/swine/Iowa/17672/1988 (A/H1N1) segment 4 (HA) 2536.6 0.000000e+00 1593/1701 (93%)
EPI240273 A/turkey/NC/19762/1988 (A/H1N1) segment 4 (HA) 2531.0 0.000000e+00 1592/1701 (93%)
EPI239970 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2531.0 0.000000e+00 1591/1700 (93%)
EPI178968 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2531.0 0.000000e+00 1591/1700 (93%)
EPI130937 A/WI/4755/1994 (A/H1N1 seasonal) segment 4 (HA) 2531.0 0.000000e+00 1591/1700 (93%)
EPI130935 A/WI/4754/1994 (A/H1N1 seasonal) segment 4 (HA) 2531.0 0.000000e+00 1591/1700 (93%)
EPI165951 A/turkey/NC/17026/1988 (A/H1N1) segment 4 (HA) 2525.5 0.000000e+00 1591/1701 (93%)
EPI130503 A/swine/IN/1726/1988 (A/H1N1) segment 4 (HA) 2520.0 0.000000e+00 1589/1700 (93%)
EPI68791 A/swine/Kansas/3024/1987 (A/H1N1) segment 4 (HA) 2520.0 0.000000e+00 1589/1700 (93%)
EPI62842 A/swine/Kansas/3228/1987 (A/H1N1) segment 4 (HA) 2520.0 0.000000e+00 1589/1700 (93%)
EPI178960 A/swine/Wisconsin/1915/1988 (A/H1N1) segment 4 (HA) 2514.4 0.000000e+00 1588/1700 (93%)

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EPI226727 A/Iowa/CEID23/2005 (A/H1N1) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI255759 A/swine/MN/48683/2002 (A/H1N1) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%)
EPI335056 A/swine/Minnesota/6998/2003 (A/H1N1) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI292057 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI292051 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 1 (PB2) 4067.4 0.000000e+00 2255/2281 (98%)
EPI292063 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 1 (PB2) 4056.4 0.000000e+00 2253/2281 (98%)
EPI292050 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI292049 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 1 (PB2) 4052.7 0.000000e+00 2252/2281 (98%)
EPI292055 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI164121 A/swine/Korea/CAN01/2004 (A/H1N1) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI292052 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 1 (PB2) 4036.0 0.000000e+00 2248/2280 (98%)
EPI292061 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 1 (PB2) 4017.6 0.000000e+00 2245/2280 (98%)
EPI292062 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 1 (PB2) 4006.5 0.000000e+00 2245/2282 (98%)
EPI292060 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 1 (PB2) 4001.0 0.000000e+00 2242/2280 (98%)
EPI292054 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 1 (PB2) 3989.9 0.000000e+00 2240/2280 (98%)
EPI164122 A/swine/Korea/CAS08/2005 (A/H1N1) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI126599 A/swine/Missouri/4296424/2006 (A/H2N3) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI126581 A/swine/Missouri/2124514/2006 (A/H2N3) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI292053 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 1 (PB2) 3967.7 0.000000e+00 2237/2281 (98%)
EPI153512 A/swine/Ohio/75004/04 (A/H1N1) segment 1 (PB2) 3960.3 0.000000e+00 2234/2279 (98%)
EPI335048 A/swine/Minnesota/5763/2003 (A/H1N2) segment 1 (PB2) 3951.1 0.000000e+00 2234/2281 (97%)
EPI327290 A/swine/Texas/4199-2/1998 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI292059 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI185083 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI185081 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI185079 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI185076 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI9471 A/Swine/Illinois/100084/01 (A/H1N2) segment 1 (PB2) 3940.0 0.000000e+00 2232/2281 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI15282 A/Swine/Korea/CY02/02 (A/H1N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI9469 A/Swine/Illinois/100085A/01 (A/H1N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2228/2280 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2228/2280 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2228/2280 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2228/2280 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2228/2281 (97%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2228/2281 (97%)
EPI98692 A/swine/Minnesota/00395/2004 (A/H3N1) segment 1 (PB2) 3917.9 0.000000e+00 2228/2281 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI9457 A/Swine/Ohio/891/01 (A/H1N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI164123 A/swine/Korea/Hongsong2/2004 (A/H1N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI98722 A/swine/IN/PU542/04 (A/H3N1) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI164130 A/swine/Korea/PZ14/2006 (A/H1N2) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3877.2 0.000000e+00 2219/2279 (97%)
EPI164129 A/swine/Korea/PZ7/2006 (A/H1N2) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%)
EPI164125 A/swine/Korea/JL02/2005 (A/H1N2) segment 1 (PB2) 3873.5 0.000000e+00 2221/2282 (97%)
EPI335031 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%)
EPI106786 A/swine/Korea/CN22/2006 (A/H3N1) segment 1 (PB2) 3868.0 0.000000e+00 2221/2283 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI106784 A/swine/Korea/PZ72-1/2006 (A/H3N1) segment 1 (PB2) 3862.5 0.000000e+00 2219/2282 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3860.6 0.000000e+00 2202/2258 (97%)
EPI164127 A/swine/Korea/Asan04/2006 (A/H1N2) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI179343 A/swine/NC/00573/2005 (A/H1N1) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%)
EPI164126 A/swine/Korea/JL04/2005 (A/H1N2) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%)
EPI164124 A/swine/Korea/JL01/2005 (A/H1N2) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%)
EPI9467 A/Swine/Indiana/P12439/00 (A/H1N2) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3849.5 0.000000e+00 2214/2279 (97%)
EPI323205 A/swine/Minnesota/65767/2006 (A/H3N2) segment 1 (PB2) 3849.5 0.000000e+00 2215/2280 (97%)
EPI335072 A/swine/Minnesota/1192/2001 (A/H1N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%)
EPI173586 A/swine/Korea/C13/2008 (A/H5N2) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%)
EPI9463 A/Swine/Minnesota/55551/00 (A/H1N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3844.0 0.000000e+00 2213/2279 (97%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI17860 A/duck/NC/91347/01 (A/H1N2) segment 1 (PB2) 3840.3 0.000000e+00 2215/2282 (97%)
EPI7616 A/Swine/Minnesota/593/99 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI7599 A/Swine/Iowa/569/99 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI7582 A/Swine/Iowa/533/99 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI7565 A/Swine/Nebraska/209/98 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%)
EPI292056 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%)
EPI220872 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%)
EPI179335 A/swine/IL/00685/2005 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3834.8 0.000000e+00 2194/2253 (97%)
EPI164128 A/swine/Korea/PZ4/2006 (A/H1N2) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3831.1 0.000000e+00 2192/2251 (97%)
EPI314698 A/swine/QC/440-A/2009 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI281299 A/swine/Iowa/02096/2008 (A/H1N1) segment 1 (PB2) 3829.2 0.000000e+00 2209/2277 (97%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 3829.2 0.000000e+00 2193/2253 (97%)
EPI164403 A/swine/Korea/JNS06/2004 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI9465 A/Swine/Iowa/930/01 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI9459 A/Swine/North Carolina/98225/01 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI235936 A/equine/North Carolina/152429/2002 (A/H3N8) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%)
EPI220880 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI182830 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI128360 A/Ontario/1252/2007 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI9461 A/Swine/North Carolina/93523/01 (A/H1N2) segment 1 (PB2) 3823.7 0.000000e+00 2212/2282 (96%)

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Commentary

http://www.recombinomics.com/News/09161 ... _2008.html

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