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PostPosted: Fri Sep 16, 2011 7:10 am 
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Posts: 27495
Location: Pittsburgh, PA USA
Students contracted triple-reassortant swine flu virus at livestock event
After identifying a triple-reassortant swine flu virus infection in a college student months before the 2009 H1N1 pandemic began, investigators found serologic evidence of infection in 40% of other students who were exposed to pigs at the same event as the index case, but there was no evidence of human-to-human transmission. Researchers from South Dakota, Iowa, and the CDC identified the reassortant strain as an H1N1 swine flu virus that was similar to others that have circulated in US pigs in recent years and was distinct from the 2009 pandemic virus. They then contacted 99 students who had been exposed to pigs at the livestock event. Of the 42 who provided serum samples, 17 (40%) were seropositive and 5 (12%) met case criteria. Of 9 students exposed to other pigs, 2 (22%) were seropositive. This compares with no seropositive cases among 8 students who were exposed to the index case and among 10 who had no exposures. The researchers conclude that rapid detection of animal flu outbreaks among humans "remains critical to the timely recognition of novel influenza viruses with pandemic potential."

http://www.cidrap.umn.edu/cidrap/conten ... sscan.html

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PostPosted: Fri Sep 16, 2011 7:11 am 
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Location: Pittsburgh, PA USA
A Pre-Pandemic Outbreak of Triple-Reassortant Swine Influenza Virus Infection Among University Students, South Dakota, 2008
Fatimah S. Dawood1,2, Libo Dong1,a, Feng Liu1, Dianna M. Blau3, Patrick J. Peebles1, Xiuhua Lu1, Lori Wagers4, Brett Oakland4, Michael Zielenski4, Russell Daly5, Vickie Horan4, Sabrina L. Swenson6, Beverly J. Schmitt6, Kathy Hancock1, Jacqueline M. Katz1, Carolyn Bridges1, Lon Kightlinger4 and Lyn Finelli1
+ Author Affiliations
1Influenza Division
2Epidemic Intelligence Service, Office of Workforce and Career Development, and
3Infectious Diseases Pathology Branch, Centers for Disease Control and Prevention, Atlanta, Georgia
4South Dakota Department of Health, Pierre; and
5South Dakota State University, Brookings
6National Veterinary Services Laboratories, Ames, Iowa
Correspondence: Fatimah S. Dawood, MD, Epidemic Intelligence Service Officer assigned to the Influenza Division, Centers for Disease Control and Prevention, 1600 Clifton Rd, MS A-32, Atlanta, GA 30333 (fdawood@cdc.gov).
Abstract
Background. After identifying a student with triple-reassortant swine influenza virus (SIV) infection and pig exposure at a livestock event, we investigated whether others were infected and if human-to-human transmission occurred.
Methods. We conducted a cohort study and serosurvey among persons exposed to (1) event pigs, (2) other pigs, (3) the index case, and (4) persons without pig or index case exposure. Confirmed cases had respiratory specimens positive for SIV within 2 weeks of the index case’s illness. Probable and suspected cases had illness and (1) exposure to any pig or (2) contact with a confirmed case preceding illness. Probable cases were seropositive. Suspected cases did not give serum samples.
Results. Of 99 event pig-exposed students, 72 (73%) participated in the investigation, and 42 (42%) provided serum samples, of whom 17 (40%) were seropositive and 5 (12%) met case criteria. Of 9 students exposed to other pigs, 2 (22%) were seropositive. Of 8 index case-exposed persons and 10 without exposures, none were seropositive. Pig-exposed persons were more likely to be seropositive than persons without pig exposure (37% vs 0%, P < .01).
Conclusions. We identified an outbreak of human SIV infection likely associated with a livestock event; there was no evidence of human-to-human transmission.
Received February 10, 2011.
Accepted May 12, 2011

http://jid.oxfordjournals.org/content/204/8/1165.short

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PostPosted: Fri Sep 16, 2011 7:22 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
LOCUS JF758482 1728 bp cRNA linear VRL 10-APR-2011
DEFINITION Influenza A virus (A/South Dakota/03/2008(H1N1)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION JF758482
VERSION JF758482.1 GI:327506385
KEYWORDS .
SOURCE Influenza A virus (A/South Dakota/03/2008(H1N1))
ORGANISM Influenza A virus (A/South Dakota/03/2008(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1728)
AUTHORS Garten,R.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2011) WHO Collaborating Center for Surveillance,
Epidemiology and Control of Influenza, Influenza Division, Centers
for Disease Control and Prevention, 1600 Clifton Road, N.E.,
Atlanta, GA 30333, USA
COMMENT GenBank Accession Numbers JF758480-JF758487 represent sequences
from the 8 segments of Influenza A virus (A/South
Dakota/03/2008(H1N1)).

##GISAID_EpiFlu(TM)Data-START##
Isolate :: A/South Dakota/03/2008
Subtype :: H1N1
Segment_name :: HA
Host_gender :: M
Host_age :: 19
Passage_history :: M2
Adamantane_resistance :: unknown
Zanamivir_resistance :: unknown
Oseltamivir_resistance :: unknown
Peramivir_resistance :: unknown
Other_resistance :: unknown
Country :: United States
State/Province :: South Dakota
Localization_detail :: USA
Collection_day :: 04
Collection_month :: 12
Collection_year :: 2008
Isolate_note :: comment: Human case of H1N1 triple
reassortant Swine-origin influenza virus
EPI_accession :: EPI291877
##GISAID_EpiFlu(TM)Data-END##
FEATURES Location/Qualifiers
source 1..1728
/organism="Influenza A virus (A/South
Dakota/03/2008(H1N1))"
/mol_type="viral cRNA"
/strain="A/South Dakota/03/2008"
/serotype="H1N1"
/host="Homo sapiens; gender M; age 19"
/db_xref="taxon:1003428"
/segment="4"
/country="USA"
/collection_date="04-Dec-2008"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="AEA92634.1"
/db_xref="GI:327506386"
/translation="MKAIIVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNILENKHDGKLCKLRGVAPLHLGKCNIAGWLLGNPECESLFAASSWSYIVETPNS
DNGTCYPGDFINYEELREHLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGANS
FYRNLIWLVKKGNSYPKLSKSYINNKKKEVLVIWGIHHPPTSIDQQTLYQNADAYVFV
GSSKYSKRFKPEIAARPKVRDQAGRMDYYWTLIEPGDTITFEATGNLVVPRYAFAMKR
GSGSGIIVSDAPVHDCNTTCQTPKGAINTSLPFQNIHPVTIGECPKYVKSTKLRMATG
LRNIPSIQSRGLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGI
TNKVNSIIEKMNTQFTAVGKEFSQLEKRIESLNNKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGIKLESARIYQILAIYSTVASSLVLLVSLGAVSFWMCSNGSLQCRICI
"
ORIGIN
1 atgaaagcaa taatagtagt cttgctatat acatttgcaa ctgcagatgc tgacacatta
61 tgtataggct atcatgcaaa taattcaact gacactgttg acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taacattcta gaaaacaagc atgacgggaa actatgtaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggatg gctcttggga
241 aacccagagt gtgaatcact attcgcagca agctcatggt catacatagt ggaaacgcct
301 aattcagaca atgggacatg ttacccagga gatttcatca attatgagga gctaagagag
361 catttgagct ctgtgtcatc atttgaaagg tttgagatat tccccaaggc aaattcatgg
421 cctaatcatg atacgaataa gggggtgacg gcagcatgtc cttatgctgg agcaaacagc
481 ttttacagaa atttaatatg gctagtaaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta acaataagaa gaaggaagtc ctcgtgatat ggggcatcca ccatccacct
601 accagtattg accaacaaac tctctaccag aatgcagatg cctatgtttt tgtgggatca
661 tcaaaataca gcaaaagatt caaaccagaa atagcagcaa gacccaaggt gagggatcaa
721 gcaggaagga tggattatta ctggacacta atagaacctg gagacacaat aacattcgaa
781 gcaactggaa atctagtggt accaagatat gccttcgcaa tgaaaagagg ctctggatct
841 ggtattatcg tttcagatgc accagtccac gactgtaata cgacttgtca aacacccaaa
901 ggtgctataa acaccagcct tccatttcag aatatacatc cagtcacaat tggggaatgt
961 ccaaaatatg tcaaaagcac aaaattgagg atggctacag gattaagaaa tatcccgtct
1021 attcaatcaa gaggcctatt tggggccatt gctggattca ttgaaggggg gtggacagga
1081 atgatagatg gatggtacgg ttaccaccat caaaatgagc aggggtcagg atatgcagcc
1141 gaccaaaaga gcacacagaa tgccattgac gggatcacta acaaagtaaa ttctattatt
1201 gaaaagatga acacacaatt cacagcagtg ggtaaagaat tcagccaatt ggaaaaaaga
1261 atagagagtt taaacaataa ggttgatgat ggattcctag atatttggac ttacaatgcc
1321 gaactgctgg ttctattgga aaatgaaaga actctggatt atcacgattc aaatgtgaag
1381 aacctatatg aaaaagtaag aagccagcta aaaaacaatg ccaaagaaat tggaaatggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg agagtgtcaa aaatgggact
1501 tatgattacc caaaatactc agaagaagca aagctaaata gagaggagat agatgggata
1561 aagctggaat cagcaaggat ttaccagatt ttggcgatct attcaactgt cgccagctca
1621 ttggtactgt tagtctctct gggggcagtc agcttctgga tgtgctccaa tgggtcttta
1681 cagtgcagaa tatgtatcta agattaggat ttcagagaca taagaaaa

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PostPosted: Fri Sep 16, 2011 7:25 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
Top 100 HA matches

EPI291877 A/South Dakota/03/2008 (A/H1N1) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI291807 A/Iowa/05/2007 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI124042 A/swine/Iowa/00239/2004 (A/H1N1) segment 4 (HA) 3020.4 0.000000e+00 1679/1701 (98%)
EPI280410 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%)
EPI178946 A/Iowa/01/2006 (A/H1N1) segment 4 (HA) 2981.6 0.000000e+00 1666/1692 (98%)
EPI226734 A/Iowa/CEID23/2005 (A/H1N1) segment 4 (HA) 2957.6 0.000000e+00 1668/1701 (98%)
EPI255761 A/swine/MN/48683/2002 (A/H1N1) segment 4 (HA) 2953.9 0.000000e+00 1667/1701 (98%)
EPI163982 A/swine/Korea/CAS08/2005 (A/H1N1) segment 4 (HA) 2942.8 0.000000e+00 1665/1701 (97%)
EPI220545 A/ferret/Iowa/15828B/2008 (A/H1N1) segment 4 (HA) 2937.3 0.000000e+00 1664/1701 (97%)
EPI292019 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 4 (HA) 2935.4 0.000000e+00 1663/1701 (97%)
EPI292014 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI292007 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI292018 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 4 (HA) 2918.8 0.000000e+00 1660/1701 (97%)
EPI335053 A/swine/Minnesota/6998/2003 (A/H1N1) segment 4 (HA) 2917.0 0.000000e+00 1660/1701 (97%)
EPI292009 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 4 (HA) 2915.1 0.000000e+00 1660/1701 (97%)
EPI291885 A/Texas/14/2008 (A/H1N1) segment 4 (HA) 2915.1 0.000000e+00 1660/1701 (97%)
EPI163981 A/swine/Korea/CAN01/2004 (A/H1N1) segment 4 (HA) 2915.1 0.000000e+00 1660/1701 (97%)
EPI289653 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI291846 A/Minnesota/10/2009 (A/H1N1) segment 4 (HA) 2904.1 0.000000e+00 1658/1701 (97%)
EPI255754 A/swine/MN/23506/2009 (A/H1N1) segment 4 (HA) 2904.1 0.000000e+00 1658/1701 (97%)
EPI292008 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 4 (HA) 2898.5 0.000000e+00 1657/1701 (97%)
EPI281263 A/swine/Iowa/02096/2008 (A/H1N1) segment 4 (HA) 2885.6 0.000000e+00 1653/1698 (97%)
EPI289656 A/swine/Iowa/46519-4/2008 (A/H1N1) segment 4 (HA) 2883.7 0.000000e+00 1649/1693 (97%)
EPI291830 A/Minnesota/03/2008 (A/H1N1) segment 4 (HA) 2874.5 0.000000e+00 1622/1655 (98%)
EPI289650 A/swine/Iowa/46519-2/2008 (A/H1N1) segment 4 (HA) 2859.7 0.000000e+00 1651/1702 (97%)
EPI14856 A/SW/MO/1877/01 (A/H1N2) segment 4 (HA) 2859.7 0.000000e+00 1650/1701 (97%)
EPI9345 A/Swine/Iowa/930/01 (A/H1N2) segment 4 (HA) 2859.7 0.000000e+00 1650/1701 (97%)
EPI230034 A/swine/Wisconsin/R33f/2001 (A/H1N2) segment 4 (HA) 2848.7 0.000000e+00 1648/1701 (96%)
EPI324859 A/swine/Minnesota/A01049462/2011 (A/H1N1) segment 4 (HA) 2837.6 0.000000e+00 1647/1702 (96%)
EPI270057 A/swine/Iowa/03031/2010 (A/H1N1) segment 4 (HA) 2837.6 0.000000e+00 1647/1702 (96%)
EPI292017 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 4 (HA) 2813.6 0.000000e+00 1642/1701 (96%)
EPI15268 A/Swine/Korea/CY02/02 (A/H1N2) segment 4 (HA) 2804.3 0.000000e+00 1640/1701 (96%)
EPI292015 A/swine/Iowa/H02HE4/2002 (A/H1N1) segment 4 (HA) 2791.4 0.000000e+00 1638/1701 (96%)
EPI312649 A/swine/Indiana/240218/2010 (A/H1N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI281264 A/swine/Nebraska/02013/2008 (A/H1N1) segment 4 (HA) 2761.9 0.000000e+00 1630/1696 (96%)
EPI292012 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI14850 A/SW/CO/17871/01 (A/H1N2) segment 4 (HA) 2743.4 0.000000e+00 1630/1702 (95%)
EPI124036 A/swine/North Carolina/36883/2002 (A/H1N1) segment 4 (HA) 2726.8 0.000000e+00 1629/1704 (95%)
EPI17873 A/duck/NC/91347/01 (A/H1N2) segment 4 (HA) 2715.7 0.000000e+00 1627/1704 (95%)
EPI9343 A/Swine/Minnesota/55551/00 (A/H1N2) segment 4 (HA) 2704.6 0.000000e+00 1625/1704 (95%)
EPI335061 A/swine/North Carolina/47834/2000 (A/H1N1) segment 4 (HA) 2676.9 0.000000e+00 1621/1705 (95%)
EPI180207 A/swine/North Carolina/29698/2003 (A/H1) segment 4 (HA) 2676.9 0.000000e+00 1620/1704 (95%)
EPI281265 A/swine/North Carolina/02084/2008 (A/H1N1) segment 4 (HA) 2660.3 0.000000e+00 1502/1533 (97%)
EPI180214 A/swine/North Carolina/9675/2003 (A/H1) segment 4 (HA) 2649.2 0.000000e+00 1614/1703 (94%)
EPI180197 A/swine/North Carolina/29482/2003 (A/H1) segment 4 (HA) 2647.4 0.000000e+00 1613/1703 (94%)
EPI180199 A/swine/North Carolina/37895/2003 (A/H1) segment 4 (HA) 2645.5 0.000000e+00 1614/1704 (94%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 2632.6 0.000000e+00 1613/1705 (94%)
EPI292010 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 4 (HA) 2627.1 0.000000e+00 1612/1705 (94%)
EPI165697 A/swine/Memphis/1/1990 (A/H1N1) segment 4 (HA) 2610.4 0.000000e+00 1610/1706 (94%)
EPI180200 A/swine/North Carolina/41621/2003 (A/H1) segment 4 (HA) 2606.7 0.000000e+00 1606/1703 (94%)
EPI180208 A/swine/North Carolina/36681/2003 (A/H1) segment 4 (HA) 2604.9 0.000000e+00 1599/1694 (94%)
EPI77673 A/swine/California/T9001707/1991 (A/H1N1) segment 4 (HA) 2588.3 0.000000e+00 1606/1706 (94%)
EPI62860 A/swine/Maryland/23239/1991 (A/H1N1) segment 4 (HA) 2588.3 0.000000e+00 1606/1706 (94%)
EPI180198 A/swine/North Carolina/35279/2003 (A/H1) segment 4 (HA) 2586.4 0.000000e+00 1601/1699 (94%)
EPI311021 A/swine/Hong Kong/1286/1993 (A/H1N1) segment 4 (HA) 2577.2 0.000000e+00 1604/1706 (94%)
EPI73834 A/swine/Iowa/24297/1991 (A/H1N1) segment 4 (HA) 2577.2 0.000000e+00 1604/1706 (94%)
EPI158914 A/turkey/IA/21089-3/1992 (A/H1N1) segment 4 (HA) 2571.7 0.000000e+00 1604/1707 (93%)
EPI311053 A/swine/Hong Kong/1795/1994 (A/H1N1) segment 4 (HA) 2566.1 0.000000e+00 1602/1706 (93%)
EPI311005 A/swine/Hong Kong/1223/1993 (A/H1N1) segment 4 (HA) 2566.1 0.000000e+00 1603/1707 (93%)
EPI310909 A/swine/Hong Kong/128/1993 (A/H1N1) segment 4 (HA) 2566.1 0.000000e+00 1603/1707 (93%)
EPI311045 A/swine/Hong Kong/1767/1994 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1602/1707 (93%)
EPI311029 A/swine/Hong Kong/1290/1993 (A/H1N1) segment 4 (HA) 2560.6 0.000000e+00 1602/1707 (93%)
EPI311061 A/swine/Hong Kong/1845/1994 (A/H1N1) segment 4 (HA) 2558.7 0.000000e+00 1599/1703 (93%)
EPI313040 A/swine/Hong Kong/2461/1994 (A/H1N1) segment 4 (HA) 2556.9 0.000000e+00 1602/1708 (93%)
EPI313032 A/swine/Hong Kong/2445/1994 (A/H1N1) segment 4 (HA) 2556.9 0.000000e+00 1602/1708 (93%)
EPI310997 A/swine/Hong Kong/1219/1993 (A/H1N1) segment 4 (HA) 2556.9 0.000000e+00 1601/1707 (93%)
EPI310925 A/swine/Hong Kong/249/1993 (A/H1N1) segment 4 (HA) 2555.0 0.000000e+00 1601/1707 (93%)
EPI313016 A/swine/Hong Kong/2422/1994 (A/H1N1) segment 4 (HA) 2551.3 0.000000e+00 1601/1708 (93%)
EPI311069 A/swine/Hong Kong/1937/1994 (A/H1N1) segment 4 (HA) 2551.3 0.000000e+00 1601/1708 (93%)
EPI310917 A/swine/Hong Kong/158/1993 (A/H1N1) segment 4 (HA) 2551.3 0.000000e+00 1600/1707 (93%)
EPI313080 A/swine/Hong Kong/2603/1994 (A/H1N1) segment 4 (HA) 2547.7 0.000000e+00 1598/1704 (93%)
EPI313064 A/swine/Hong Kong/2518/1994 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1600/1708 (93%)
EPI313056 A/swine/Hong Kong/2507/1994 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1600/1708 (93%)
EPI313024 A/swine/Hong Kong/2428/1994 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1600/1708 (93%)
EPI313008 A/swine/Hong Kong/2161/1994 (A/H1N1) segment 4 (HA) 2545.8 0.000000e+00 1600/1708 (93%)
EPI313072 A/swine/Hong Kong/2592/1994 (A/H1N1) segment 4 (HA) 2542.1 0.000000e+00 1597/1704 (93%)
EPI313048 A/swine/Hong Kong/2503/1994 (A/H1N1) segment 4 (HA) 2542.1 0.000000e+00 1597/1704 (93%)
EPI9339 A/Swine/North Carolina/98225/01 (A/H1N2) segment 4 (HA) 2527.3 0.000000e+00 1595/1706 (93%)
EPI311037 A/swine/Hong Kong/1374/1993 (A/H1N1) segment 4 (HA) 2525.5 0.000000e+00 1595/1705 (93%)
EPI311013 A/swine/Hong Kong/835/1993 (A/H1N1) segment 4 (HA) 2523.6 0.000000e+00 1597/1709 (93%)
EPI310981 A/swine/Hong Kong/813/1993 (A/H1N1) segment 4 (HA) 2523.6 0.000000e+00 1597/1709 (93%)
EPI310949 A/swine/Hong Kong/574/1993 (A/H1N1) segment 4 (HA) 2523.6 0.000000e+00 1597/1709 (93%)
EPI310941 A/swine/Hong Kong/347/1993 (A/H1N1) segment 4 (HA) 2523.6 0.000000e+00 1597/1709 (93%)
EPI310933 A/swine/Hong Kong/299/1993 (A/H1N1) segment 4 (HA) 2521.8 0.000000e+00 1597/1709 (93%)
EPI177542 A/swine/Hong Kong/103/1993 (A/H1N1) segment 4 (HA) 2521.8 0.000000e+00 1564/1661 (94%)
EPI180206 A/swine/North Carolina/26762/2003 (A/H1) segment 4 (HA) 2520.0 0.000000e+00 1591/1704 (93%)
EPI310989 A/swine/Hong Kong/829/1993 (A/H1N1) segment 4 (HA) 2518.1 0.000000e+00 1596/1709 (93%)
EPI291704 A/Oklahoma/11/1990 (A/H1N1) segment 4 (HA) 2516.3 0.000000e+00 1593/1706 (93%)
EPI310965 A/swine/Hong Kong/172/1993 (A/H1N1) segment 4 (HA) 2512.6 0.000000e+00 1562/1661 (94%)
EPI62521 A/swine/Iowa/17672/1988 (A/H1N1) segment 4 (HA) 2505.2 0.000000e+00 1592/1707 (93%)
EPI240273 A/turkey/NC/19762/1988 (A/H1N1) segment 4 (HA) 2494.1 0.000000e+00 1590/1707 (93%)
EPI239970 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2494.1 0.000000e+00 1589/1706 (93%)
EPI178968 A/Swine/Indiana/1726/1988 (A/H1N1) segment 4 (HA) 2494.1 0.000000e+00 1589/1706 (93%)
EPI130937 A/WI/4755/1994 (A/H1N1 seasonal) segment 4 (HA) 2494.1 0.000000e+00 1589/1706 (93%)
EPI130935 A/WI/4754/1994 (A/H1N1 seasonal) segment 4 (HA) 2494.1 0.000000e+00 1589/1706 (93%)
EPI178960 A/swine/Wisconsin/1915/1988 (A/H1N1) segment 4 (HA) 2488.6 0.000000e+00 1588/1706 (93%)
EPI165951 A/turkey/NC/17026/1988 (A/H1N1) segment 4 (HA) 2488.6 0.000000e+00 1589/1707 (93%)
EPI62748 A/swine/Wisconsin/1915/1988 (A/H1N1) segment 4 (HA) 2488.6 0.000000e+00 1588/1706 (93%)
EPI130503 A/swine/IN/1726/1988 (A/H1N1) segment 4 (HA) 2483.0 0.000000e+00 1587/1706 (93%)
EPI63955 A/swine/Iowa/31483/1988 (A/H1N1) segment 4 (HA) 2477.5 0.000000e+00 1587/1707 (92%)

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PostPosted: Fri Sep 16, 2011 7:27 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
Top 100 PB2 matches

EPI291880 A/South Dakota/03/2008 (A/H1N1) segment 1 (PB2) 2394.4 0.000000e+00 1296/1296 (100%)
EPI291810 A/Iowa/05/2007 (A/H1N1) segment 1 (PB2) 2344.5 0.000000e+00 1287/1296 (99%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 2307.6 0.000000e+00 1271/1282 (99%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 2289.1 0.000000e+00 1277/1296 (98%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 2283.6 0.000000e+00 1276/1296 (98%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 2283.6 0.000000e+00 1276/1296 (98%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 2283.6 0.000000e+00 1276/1296 (98%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 2283.6 0.000000e+00 1276/1296 (98%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 2283.6 0.000000e+00 1276/1296 (98%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 2272.5 0.000000e+00 1274/1296 (98%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 2267.0 0.000000e+00 1271/1293 (98%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 2267.0 0.000000e+00 1273/1296 (98%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 2267.0 0.000000e+00 1271/1293 (98%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 2267.0 0.000000e+00 1273/1296 (98%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 2261.4 0.000000e+00 1272/1296 (98%)
EPI324040 A/swine/QC/1697-1/2009 (A/H1N1) segment 1 (PB2) 2255.9 0.000000e+00 1271/1296 (98%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 2254.0 0.000000e+00 1270/1295 (98%)
EPI323967 A/swine/QC/370/2009 (A/H1N1) segment 1 (PB2) 2244.8 0.000000e+00 1269/1296 (97%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 2244.8 0.000000e+00 1269/1296 (97%)
EPI182830 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 1 (PB2) 2244.8 0.000000e+00 1269/1296 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 2244.8 0.000000e+00 1269/1296 (97%)
EPI291833 A/Minnesota/03/2008 (A/H1N1) segment 1 (PB2) 2243.0 0.000000e+00 1266/1292 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 2239.3 0.000000e+00 1268/1296 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 2239.3 0.000000e+00 1268/1296 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 2239.3 0.000000e+00 1268/1296 (97%)
EPI323975 A/swine/QC/398/2009 (A/H1N1) segment 1 (PB2) 2237.4 0.000000e+00 1267/1295 (97%)
EPI281299 A/swine/Iowa/02096/2008 (A/H1N1) segment 1 (PB2) 2233.7 0.000000e+00 1265/1293 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 2233.7 0.000000e+00 1265/1293 (97%)
EPI128360 A/Ontario/1252/2007 (A/H3N2) segment 1 (PB2) 2233.7 0.000000e+00 1267/1296 (97%)
EPI166272 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 1 (PB2) 2230.0 0.000000e+00 1257/1282 (98%)
EPI314646 A/swine/QC/382/2009 (A/H3N2) segment 1 (PB2) 2228.2 0.000000e+00 1266/1296 (97%)
EPI166256 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 1 (PB2) 2224.5 0.000000e+00 1256/1282 (97%)
EPI314698 A/swine/QC/440-A/2009 (A/H3N2) segment 1 (PB2) 2222.6 0.000000e+00 1265/1296 (97%)
EPI292059 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 1 (PB2) 2222.6 0.000000e+00 1263/1293 (97%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 2222.6 0.000000e+00 1263/1293 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 2218.9 0.000000e+00 1255/1282 (97%)
EPI281308 A/swine/Iowa/02039/2008 (A/H1N2) segment 1 (PB2) 2217.1 0.000000e+00 1263/1294 (97%)
EPI324161 A/SW/MB/5-5/2009 (A/H1N1) segment 1 (PB2) 2215.3 0.000000e+00 1264/1296 (97%)
EPI323205 A/swine/Minnesota/65767/2006 (A/H3N2) segment 1 (PB2) 2215.3 0.000000e+00 1263/1295 (97%)
EPI255751 A/swine/MN/23506/2009 (A/H1N1) segment 1 (PB2) 2211.6 0.000000e+00 1263/1296 (97%)
EPI9469 A/Swine/Illinois/100085A/01 (A/H1N2) segment 1 (PB2) 2211.6 0.000000e+00 1261/1293 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 2209.7 0.000000e+00 1262/1295 (97%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 2209.7 0.000000e+00 1262/1295 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 2207.9 0.000000e+00 1253/1282 (97%)
EPI324093 A/swine/QC/3399-6/2009 (A/H1N1) segment 1 (PB2) 2206.0 0.000000e+00 1262/1296 (97%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 2206.0 0.000000e+00 1262/1296 (97%)
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 2206.0 0.000000e+00 1253/1282 (97%)
EPI100055 A/swine/Ontario/53518/03 (A/H1N1) segment 1 (PB2) 2206.0 0.000000e+00 1260/1293 (97%)
EPI15282 A/Swine/Korea/CY02/02 (A/H1N2) segment 1 (PB2) 2206.0 0.000000e+00 1260/1293 (97%)
EPI291888 A/Texas/14/2008 (A/H1N1) segment 1 (PB2) 2204.2 0.000000e+00 1257/1289 (97%)
EPI335031 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 1 (PB2) 2200.5 0.000000e+00 1260/1294 (97%)
EPI324150 A/SW/SK/11-16/2009 (A/H1N1) segment 1 (PB2) 2200.5 0.000000e+00 1261/1296 (97%)
EPI314638 A/swine/QC/2108-2/2009 (A/H3N2) segment 1 (PB2) 2200.5 0.000000e+00 1261/1296 (97%)
EPI246072 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 1 (PB2) 2200.5 0.000000e+00 1261/1296 (97%)
EPI246064 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 1 (PB2) 2200.5 0.000000e+00 1261/1296 (97%)
EPI246056 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 1 (PB2) 2200.5 0.000000e+00 1261/1296 (97%)
EPI220888 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220848 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220840 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220808 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220800 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220792 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1262/1297 (97%)
EPI9471 A/Swine/Illinois/100084/01 (A/H1N2) segment 1 (PB2) 2200.5 0.000000e+00 1259/1293 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 2198.6 0.000000e+00 1260/1295 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 2198.6 0.000000e+00 1246/1274 (97%)
EPI153512 A/swine/Ohio/75004/04 (A/H1N1) segment 1 (PB2) 2198.6 0.000000e+00 1259/1293 (97%)
EPI166259 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 1 (PB2) 2196.8 0.000000e+00 1251/1282 (97%)
EPI314690 A/swine/QC/1840-2/2009 (A/H3N2) segment 1 (PB2) 2194.9 0.000000e+00 1260/1296 (97%)
EPI220872 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 1 (PB2) 2194.9 0.000000e+00 1261/1297 (97%)
EPI220864 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 1 (PB2) 2194.9 0.000000e+00 1261/1297 (97%)
EPI166263 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 1 (PB2) 2194.9 0.000000e+00 1249/1280 (97%)
EPI335048 A/swine/Minnesota/5763/2003 (A/H1N2) segment 1 (PB2) 2189.4 0.000000e+00 1257/1293 (97%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 2189.4 0.000000e+00 1259/1296 (97%)
EPI292062 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 1 (PB2) 2189.4 0.000000e+00 1257/1293 (97%)
EPI281309 A/swine/Minnesota/02053/2008 (A/H1N1) segment 1 (PB2) 2189.4 0.000000e+00 1257/1293 (97%)
EPI281305 A/swine/Minnesota/02093/2008 (A/H1N1) segment 1 (PB2) 2189.4 0.000000e+00 1258/1294 (97%)
EPI220880 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 1 (PB2) 2189.4 0.000000e+00 1260/1297 (97%)
EPI220768 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 1 (PB2) 2189.4 0.000000e+00 1260/1297 (97%)
EPI98722 A/swine/IN/PU542/04 (A/H3N1) segment 1 (PB2) 2189.4 0.000000e+00 1257/1293 (97%)
EPI291849 A/Minnesota/10/2009 (A/H1N1) segment 1 (PB2) 2187.6 0.000000e+00 1250/1283 (97%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 2185.7 0.000000e+00 1255/1291 (97%)
EPI292053 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 1 (PB2) 2183.9 0.000000e+00 1256/1293 (97%)
EPI281302 A/swine/North Carolina/02023/2008 (A/H1N1) segment 1 (PB2) 2183.9 0.000000e+00 1256/1293 (97%)
EPI281301 A/swine/North Carolina/02084/2008 (A/H1N1) segment 1 (PB2) 2183.9 0.000000e+00 1256/1293 (97%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 2183.9 0.000000e+00 1258/1296 (97%)
EPI220904 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 1 (PB2) 2183.9 0.000000e+00 1259/1297 (97%)
EPI220896 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 1 (PB2) 2183.9 0.000000e+00 1259/1297 (97%)
EPI220856 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 1 (PB2) 2183.9 0.000000e+00 1259/1297 (97%)
EPI220776 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 1 (PB2) 2183.9 0.000000e+00 1259/1297 (97%)
EPI179343 A/swine/NC/00573/2005 (A/H1N1) segment 1 (PB2) 2183.9 0.000000e+00 1257/1294 (97%)
EPI179335 A/swine/IL/00685/2005 (A/H1N1) segment 1 (PB2) 2183.9 0.000000e+00 1257/1294 (97%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 2183.9 0.000000e+00 1258/1296 (97%)
EPI323992 A/swine/QC/1488-2/2009 (A/H1N1) segment 1 (PB2) 2180.2 0.000000e+00 1257/1296 (96%)
EPI314682 A/swine/QC/414/2009 (A/H3N2) segment 1 (PB2) 2178.3 0.000000e+00 1259/1298 (96%)
EPI292061 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 1 (PB2) 2178.3 0.000000e+00 1255/1293 (97%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 2178.3 0.000000e+00 1255/1293 (97%)

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PostPosted: Fri Sep 16, 2011 7:29 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
Top 100 PB1 matches

EPI291879 A/South Dakota/03/2008 (A/H1N1) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI291809 A/Iowa/05/2007 (A/H1N1) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 4060.1 0.000000e+00 2240/2261 (99%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 4047.1 0.000000e+00 2246/2274 (98%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3993.6 0.000000e+00 2237/2274 (98%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3991.7 0.000000e+00 2236/2274 (98%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3991.7 0.000000e+00 2229/2263 (98%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3978.8 0.000000e+00 2232/2271 (98%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 3977.0 0.000000e+00 2225/2262 (98%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3973.3 0.000000e+00 2231/2271 (98%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3971.4 0.000000e+00 2233/2274 (98%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI246057 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 2 (PB1) 3958.5 0.000000e+00 2230/2274 (98%)
EPI324151 A/SW/SK/11-16/2009 (A/H1N1) segment 2 (PB1) 3956.6 0.000000e+00 2230/2274 (98%)
EPI281289 A/swine/North Carolina/02084/2008 (A/H1N1) segment 2 (PB1) 3956.6 0.000000e+00 2228/2271 (98%)
EPI246073 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 2 (PB1) 3956.6 0.000000e+00 2230/2274 (98%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 3956.6 0.000000e+00 2231/2275 (98%)
EPI128358 A/Ontario/1252/2007 (A/H3N2) segment 2 (PB1) 3956.6 0.000000e+00 2230/2274 (98%)
EPI291848 A/Minnesota/10/2009 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI255752 A/swine/MN/23506/2009 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI246065 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI292039 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 2 (PB1) 3949.3 0.000000e+00 2228/2273 (98%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI314689 A/swine/QC/1840-2/2009 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%)
EPI314645 A/swine/QC/382/2009 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI281297 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2223/2271 (97%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI324094 A/swine/QC/3399-6/2009 (A/H1N1) segment 2 (PB1) 3925.3 0.000000e+00 2225/2275 (97%)
EPI177839 A/swine/Minnesota/64585/2006 (A/H1N2) segment 2 (PB1) 3923.4 0.000000e+00 2226/2276 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI324162 A/SW/MB/5-5/2009 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI314697 A/swine/QC/440-A/2009 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI314681 A/swine/QC/414/2009 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI166276 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 2 (PB1) 3910.5 0.000000e+00 2213/2261 (97%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI314672 A/swine/QC/1698-1/2009 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2219/2272 (97%)
EPI177843 A/swine/Minnesota/2728/2007 (A/H1N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI177840 A/swine/Minnesota/66743/2006 (A/H1N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2213/2263 (97%)
EPI323993 A/swine/QC/1488-2/2009 (A/H1N1) segment 2 (PB1) 3899.4 0.000000e+00 2218/2275 (97%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 3897.6 0.000000e+00 2210/2260 (97%)
EPI323976 A/swine/QC/398/2009 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI314671 A/swine/QC/1685-5/2009 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2218/2272 (97%)
EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI324016 A/swine/QC/1531-3/2009 (A/H1N1) segment 2 (PB1) 3892.0 0.000000e+00 2218/2274 (97%)
EPI291818 A/Iowa/16/2009 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI281293 A/swine/Minnesota/02093/2008 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2217/2272 (97%)
EPI314637 A/swine/QC/2108-2/2009 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2219/2276 (97%)
EPI220914 A/swine/Texas/008648/2008 (A/H1N2) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2219/2276 (97%)
EPI324041 A/swine/QC/1697-1/2009 (A/H1N1) segment 2 (PB1) 3880.9 0.000000e+00 2216/2274 (97%)
EPI166273 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 2 (PB1) 3880.9 0.000000e+00 2207/2260 (97%)
EPI324033 A/swine/QC/1695-3/2009 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2214/2273 (97%)
EPI323968 A/swine/QC/370/2009 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI312687 A/swine/Minnesota/239105/2009 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2215/2272 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI281296 A/swine/Iowa/02039/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2212/2271 (97%)
EPI220857 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220833 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220825 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220817 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220809 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220801 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI220793 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)

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PostPosted: Fri Sep 16, 2011 7:31 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
EPI291878 A/South Dakota/03/2008 (A/H1N1) segment 3 (PA) 3895.7 0.000000e+00 2109/2109 (100%)
EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3873.5 0.000000e+00 2105/2109 (99%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2092/2109 (99%)
EPI166271 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2086/2101 (99%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2089/2109 (99%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3779.4 0.000000e+00 2088/2109 (99%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2087/2109 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2087/2109 (98%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3768.3 0.000000e+00 2086/2109 (98%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2085/2109 (98%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2085/2109 (98%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2085/2109 (98%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3759.1 0.000000e+00 2071/2089 (99%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2084/2109 (98%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3757.2 0.000000e+00 2085/2110 (98%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3751.7 0.000000e+00 2083/2109 (98%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3751.7 0.000000e+00 2083/2109 (98%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3751.7 0.000000e+00 2083/2109 (98%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2082/2109 (98%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2068/2088 (99%)
EPI281276 A/swine/Nebraska/02013/2008 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2080/2109 (98%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3735.0 0.000000e+00 2080/2109 (98%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2080/2110 (98%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2079/2109 (98%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2079/2109 (98%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2079/2110 (98%)
EPI295331 A/swine/South Dakota/152B/2009 (A/H1N2) segment 3 (PA) 3724.0 0.000000e+00 2078/2109 (98%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2078/2109 (98%)
EPI166274 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 3 (PA) 3724.0 0.000000e+00 2064/2088 (98%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2078/2109 (98%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2078/2109 (98%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2079/2110 (98%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2078/2109 (98%)
EPI291886 A/Texas/14/2008 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2077/2109 (98%)
EPI222651 A/swine/Minnesota/1145/2007 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2077/2109 (98%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2077/2109 (98%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2077/2109 (98%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2077/2109 (98%)
EPI153495 A/swine/Ohio/24366/07 (A/H1N1) segment 3 (PA) 3711.0 0.000000e+00 2061/2087 (98%)
EPI323281 A/swine/Minnesota/7931/2007 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2075/2109 (98%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2076/2110 (98%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2076/2110 (98%)
EPI302667 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2076/2110 (98%)
EPI291866 A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2076/2110 (98%)
EPI220915 A/swine/Texas/008648/2008 (A/H1N2) segment 3 (PA) 3707.3 0.000000e+00 2075/2109 (98%)
EPI166283 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 3 (PA) 3705.5 0.000000e+00 2056/2081 (98%)
EPI302674 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2075/2110 (98%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2074/2109 (98%)
EPI291831 A/Minnesota/03/2008 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2074/2109 (98%)
EPI281283 A/swine/Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2075/2110 (98%)
EPI244300 A/Kansas/13/2009 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2075/2110 (98%)
EPI103169 A/swine/Manitoba/12707/2005 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2074/2109 (98%)
EPI281280 A/swine/Minnesota/02011/2008 (A/H1N2) segment 3 (PA) 3696.3 0.000000e+00 2075/2111 (98%)
EPI222673 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2073/2109 (98%)
EPI323199 A/swine/Minnesota/5947/2007 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2073/2110 (98%)
EPI281274 A/swine/Texas/01976/2008 (A/H1N2) segment 3 (PA) 3690.7 0.000000e+00 2073/2110 (98%)
EPI333149 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3685.2 0.000000e+00 2071/2109 (98%)
EPI323253 A/swine/Minnesota/65767/2006 (A/H3N2) segment 3 (PA) 3685.2 0.000000e+00 2072/2110 (98%)
EPI291847 A/Minnesota/10/2009 (A/H1N1) segment 3 (PA) 3685.2 0.000000e+00 2072/2110 (98%)
EPI255753 A/swine/MN/23506/2009 (A/H1N1) segment 3 (PA) 3685.2 0.000000e+00 2072/2110 (98%)
EPI220931 A/swine/Texas/050625/2008 (A/H1N2) segment 3 (PA) 3685.2 0.000000e+00 2072/2110 (98%)
EPI281275 A/swine/Iowa/02096/2008 (A/H1N1) segment 3 (PA) 3679.6 0.000000e+00 2070/2109 (98%)
EPI182828 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 3 (PA) 3679.6 0.000000e+00 2070/2109 (98%)
EPI335617 A/Pennsylvania/11/2011 (A/H3N2) segment 3 (PA) 3677.8 0.000000e+00 2069/2109 (98%)
EPI281285 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2068/2110 (98%)
EPI222681 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2067/2109 (98%)
EPI220850 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 3 (PA) 3663.0 0.000000e+00 2068/2110 (98%)
EPI220874 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2067/2110 (97%)
EPI220834 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2067/2110 (97%)
EPI220826 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2067/2110 (97%)
EPI220794 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2067/2110 (97%)
EPI220786 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2067/2110 (97%)
EPI220778 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 3 (PA) 3657.5 0.000000e+00 2066/2109 (97%)
EPI220802 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 3 (PA) 3651.9 0.000000e+00 2066/2110 (97%)
EPI220923 A/swine/Texas/050593/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2065/2110 (97%)
EPI220882 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2065/2110 (97%)
EPI220842 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2065/2110 (97%)
EPI220818 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2065/2110 (97%)
EPI220810 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2065/2110 (97%)
EPI179353 A/swine/IL/07003243/2007 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2064/2109 (97%)
EPI220890 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 3 (PA) 3640.9 0.000000e+00 2064/2110 (97%)
EPI281281 A/swine/Minnesota/02093/2008 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2064/2111 (97%)
EPI220866 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2063/2110 (97%)
EPI220858 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2063/2110 (97%)
EPI220770 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2063/2110 (97%)
EPI166277 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 3 (PA) 3635.3 0.000000e+00 2040/2076 (98%)
EPI246074 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 3 (PA) 3629.8 0.000000e+00 2061/2109 (97%)
EPI246066 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 3 (PA) 3629.8 0.000000e+00 2061/2109 (97%)
EPI220898 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 3 (PA) 3629.8 0.000000e+00 2062/2110 (97%)
EPI324152 A/SW/SK/11-16/2009 (A/H1N1) segment 3 (PA) 3624.2 0.000000e+00 2060/2109 (97%)
EPI323994 A/swine/QC/1488-2/2009 (A/H1N1) segment 3 (PA) 3624.2 0.000000e+00 2061/2110 (97%)
EPI246058 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 3 (PA) 3624.2 0.000000e+00 2060/2109 (97%)
EPI166261 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 3 (PA) 3624.2 0.000000e+00 2054/2100 (97%)
EPI335628 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3620.6 0.000000e+00 2036/2074 (98%)
EPI314636 A/swine/QC/2108-2/2009 (A/H3N2) segment 3 (PA) 3618.7 0.000000e+00 2060/2110 (97%)
EPI220906 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 3 (PA) 3618.7 0.000000e+00 2060/2110 (97%)
EPI324163 A/SW/MB/5-5/2009 (A/H1N1) segment 3 (PA) 3613.2 0.000000e+00 2058/2109 (97%)
EPI219359 A/swine/Kansas/015252/2009 (A/H3N2) segment 3 (PA) 3613.2 0.000000e+00 2060/2111 (97%)
EPI324034 A/swine/QC/1695-3/2009 (A/H1N1) segment 3 (PA) 3609.5 0.000000e+00 2058/2110 (97%)
EPI314516 A/quail/QC/FAV-10/2008 (A/H3N2) segment 3 (PA) 3607.6 0.000000e+00 2058/2110 (97%)

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PostPosted: Fri Sep 16, 2011 7:32 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
EPI291876 A/South Dakota/03/2008 (A/H1N1) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI103210 A/turkey/Ontario/31232/2005 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI103192 A/swine/Ontario/33853/2005 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI103120 A/Ontario/RV1273/2005 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI182819 A/swine/Quebec/4001/2005 (A/H3N2) segment 5 (NP) 2627.1 0.000000e+00 1473/1498 (98%)
EPI103174 A/swine/Manitoba/12707/2005 (A/H3N2) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI103138 A/swine/Alberta/14722/2005 (A/H3N2) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI101395 A/turkey/Ohio/313053/04 (A/H3N2) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI314334 A/turkey/BC/1529-3/2005 (A/H3N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI103156 A/swine/British Columbia/28103/2005 (A/H3N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI98714 A/swine/MI/PU243/04 (A/H3N1) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI323206 A/swine/Minnesota/65767/2006 (A/H3N2) segment 5 (NP) 2616.0 0.000000e+00 1470/1497 (98%)
EPI324097 A/swine/QC/3399-6/2009 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI235272 A/swine/North Carolina/2003 (A/H3N2) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%)
EPI222675 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 5 (NP) 2590.1 0.000000e+00 1465/1497 (97%)
EPI323282 A/swine/Minnesota/7931/2007 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%)
EPI323200 A/swine/Minnesota/5947/2007 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%)
EPI281261 A/swine/Minnesota/02053/2008 (A/H1N1) segment 5 (NP) 2588.3 0.000000e+00 1464/1495 (97%)
EPI227577 A/turkey/NC/353568/2005 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%)
EPI324019 A/swine/QC/1531-3/2009 (A/H1N1) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI291996 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI220828 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI220796 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI220788 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI220772 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI168651 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 5 (NP) 2579.0 0.000000e+00 1463/1497 (97%)
EPI220892 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220884 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220868 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220852 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220844 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220836 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220820 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220812 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI220780 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI182826 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 5 (NP) 2577.2 0.000000e+00 1464/1498 (97%)
EPI128351 A/Ontario/1252/2007 (A/H3N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI314642 A/swine/QC/382/2009 (A/H3N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI220876 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI220860 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI220804 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI324044 A/swine/QC/1697-1/2009 (A/H1N1) segment 5 (NP) 2568.0 0.000000e+00 1461/1497 (97%)
EPI314634 A/swine/QC/2108-2/2009 (A/H3N2) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%)
EPI222652 A/swine/Minnesota/1145/2007 (A/H3N2) segment 5 (NP) 2562.4 0.000000e+00 1460/1497 (97%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 2560.6 0.000000e+00 1461/1498 (97%)
EPI324159 A/SW/SK/11-35/2009 (A/H1N1) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI324036 A/swine/QC/1695-3/2009 (A/H1N1) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI314694 A/swine/QC/440-A/2009 (A/H3N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI246076 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI246068 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI246060 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI220933 A/swine/Texas/050625/2008 (A/H1N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI220900 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 2560.6 0.000000e+00 1461/1498 (97%)
EPI324154 A/SW/SK/11-16/2009 (A/H1N1) segment 5 (NP) 2556.9 0.000000e+00 1459/1497 (97%)
EPI323979 A/swine/QC/398/2009 (A/H1N1) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%)
EPI220908 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%)
EPI323971 A/swine/QC/370/2009 (A/H1N1) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%)
EPI314686 A/swine/QC/1840-2/2009 (A/H3N2) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%)
EPI220925 A/swine/Texas/050593/2008 (A/H1N2) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%)
EPI314678 A/swine/QC/414/2009 (A/H3N2) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%)
EPI280413 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%)
EPI226731 A/Iowa/CEID23/2005 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI314662 A/swine/QC/1698-1/2009 (A/H3N2) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI291999 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 5 (NP) 2538.4 0.000000e+00 1457/1498 (97%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 2538.4 0.000000e+00 1457/1498 (97%)
EPI324165 A/SW/MB/5-5/2009 (A/H1N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI281257 A/swine/Minnesota/02093/2008 (A/H1N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1496 (97%)
EPI228923 A/turkey/Illinois/2004 (A/H3N2) segment 5 (NP) 2532.9 0.000000e+00 1431/1461 (97%)
EPI314780 A/swine/QC/1685-1/2009 (A/H3N2) segment 5 (NP) 2529.2 0.000000e+00 1453/1495 (97%)
EPI98730 A/swine/IN/PU542/04 (A/H3N1) segment 5 (NP) 2529.2 0.000000e+00 1455/1498 (97%)
EPI292003 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI281260 A/swine/Iowa/02039/2008 (A/H1N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1496 (97%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%)
EPI314661 A/swine/QC/1685-5/2009 (A/H3N2) segment 5 (NP) 2523.6 0.000000e+00 1452/1495 (97%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 2518.1 0.000000e+00 1450/1493 (97%)
EPI324146 A/SW/SK/12-71/2009 (A/H1N1 swl) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 2516.3 0.000000e+00 1453/1498 (96%)
EPI291997 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%)
EPI126568 A/swine/Missouri/2124514/2006 (A/H2N3) segment 5 (NP) 2516.3 0.000000e+00 1453/1498 (96%)
EPI15274 A/Swine/Korea/CY02/02 (A/H1N2) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%)
EPI9385 A/Swine/Ohio/891/01 (A/H1N2) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%)
EPI98694 A/swine/Minnesota/00395/2004 (A/H3N1) segment 5 (NP) 2514.4 0.000000e+00 1445/1487 (97%)
EPI314514 A/quail/QC/FAV-10/2008 (A/H3N2) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%)
EPI291829 A/Minnesota/03/2008 (A/H1N1) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%)
EPI323996 A/swine/QC/1488-2/2009 (A/H1N1) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 2505.2 0.000000e+00 1451/1498 (96%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%)

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Posts: 27495
Location: Pittsburgh, PA USA
EPI291875 A/South Dakota/03/2008 (A/H1N1) segment 6 (NA) 2582.7 0.000000e+00 1398/1398 (100%)
EPI291850 A/Missouri/04/2006 (A/H1N1) segment 6 (NA) 2447.9 0.000000e+00 1371/1394 (98%)
EPI291805 A/Iowa/05/2007 (A/H1N1) segment 6 (NA) 2433.2 0.000000e+00 1333/1341 (99%)
EPI289651 A/swine/Iowa/46519-2/2008 (A/H1N1) segment 6 (NA) 2405.5 0.000000e+00 1368/1400 (97%)
EPI289654 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 6 (NA) 2399.9 0.000000e+00 1367/1400 (97%)
EPI280412 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 6 (NA) 2399.9 0.000000e+00 1366/1399 (97%)
EPI291793 A/Iowa/01/2006 (A/H1N1) segment 6 (NA) 2394.4 0.000000e+00 1353/1381 (97%)
EPI291844 A/Minnesota/10/2009 (A/H1N1) segment 6 (NA) 2388.8 0.000000e+00 1365/1400 (97%)
EPI281239 A/swine/Iowa/02096/2008 (A/H1N1) segment 6 (NA) 2388.8 0.000000e+00 1365/1400 (97%)
EPI255756 A/swine/MN/23506/2009 (A/H1N1) segment 6 (NA) 2388.8 0.000000e+00 1365/1400 (97%)
EPI226732 A/Iowa/CEID23/2005 (A/H1N1) segment 6 (NA) 2388.8 0.000000e+00 1364/1399 (97%)
EPI289657 A/swine/Iowa/46519-4/2008 (A/H1N1) segment 6 (NA) 2377.8 0.000000e+00 1363/1400 (97%)
EPI124062 A/swine/Iowa/00239/2004 (A/H1N1) segment 6 (NA) 2372.2 0.000000e+00 1350/1383 (97%)
EPI281241 A/swine/North Carolina/02084/2008 (A/H1N1) segment 6 (NA) 2368.5 0.000000e+00 1356/1393 (97%)
EPI324821 A/swine/Minnesota/A01049462/2011 (A/H1N1) segment 6 (NA) 2366.7 0.000000e+00 1361/1400 (97%)
EPI281240 A/swine/Nebraska/02013/2008 (A/H1N1) segment 6 (NA) 2361.1 0.000000e+00 1342/1374 (97%)
EPI98688 A/swine/Minnesota/00395/2004 (A/H3N1) segment 6 (NA) 2361.1 0.000000e+00 1359/1399 (97%)
EPI291883 A/Texas/14/2008 (A/H1N1) segment 6 (NA) 2298.4 0.000000e+00 1307/1338 (97%)
EPI291992 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 6 (NA) 2267.0 0.000000e+00 1343/1400 (95%)
EPI291980 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 6 (NA) 2267.0 0.000000e+00 1342/1399 (95%)
EPI255763 A/swine/MN/48683/2002 (A/H1N1) segment 6 (NA) 2267.0 0.000000e+00 1343/1400 (95%)
EPI164022 A/swine/Korea/CAS08/2005 (A/H1N1) segment 6 (NA) 2267.0 0.000000e+00 1343/1400 (95%)
EPI164021 A/swine/Korea/CAN01/2004 (A/H1N1) segment 6 (NA) 2267.0 0.000000e+00 1344/1401 (95%)
EPI291981 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 6 (NA) 2261.4 0.000000e+00 1342/1400 (95%)
EPI291978 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 6 (NA) 2255.9 0.000000e+00 1341/1400 (95%)
EPI335051 A/swine/Minnesota/6998/2003 (A/H1N1) segment 6 (NA) 2241.1 0.000000e+00 1335/1395 (95%)
EPI291991 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 6 (NA) 2239.3 0.000000e+00 1339/1401 (95%)
EPI291986 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 6 (NA) 2233.7 0.000000e+00 1338/1401 (95%)
EPI291987 A/swine/Iowa/H02HE4/2002 (A/H1N1) segment 6 (NA) 2222.6 0.000000e+00 1336/1401 (95%)
EPI291979 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 6 (NA) 2222.6 0.000000e+00 1335/1400 (95%)
EPI228775 A/swine/Ontario/11112/04 (A/H1N1) segment 6 (NA) 2217.1 0.000000e+00 1334/1400 (95%)
EPI100012 A/swine/Ontario/57561/03 (A/H1N1) segment 6 (NA) 2194.9 0.000000e+00 1330/1400 (95%)
EPI291797 A/Iowa/02/2009 (A/H1N1) segment 6 (NA) 2172.8 0.000000e+00 1329/1403 (94%)
EPI180152 A/swine/Texas/36440-2/2005 (A/H1N1) segment 6 (NA) 2165.4 0.000000e+00 1295/1356 (95%)
EPI312683 A/swine/Minnesota/226128/2010 (A/H1N1) segment 6 (NA) 2150.6 0.000000e+00 1325/1403 (94%)
EPI307938 A/swine/Iowa/A01057153/2010 (A/H1N1) segment 6 (NA) 2148.8 0.000000e+00 1324/1403 (94%)
EPI100066 A/swine/Ontario/53518/03 (A/H1N1) segment 6 (NA) 2146.9 0.000000e+00 1321/1399 (94%)
EPI324804 A/swine/Minnesota/A01049218/2010 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1323/1402 (94%)
EPI324803 A/swine/Minnesota/A01049217/2010 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1323/1402 (94%)
EPI318088 A/swine/Iowa/A01049148/2010 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1324/1403 (94%)
EPI317029 A/swine/Minnesota/A0109101/2010 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1325/1404 (94%)
EPI314793 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1324/1403 (94%)
EPI100120 A/swine/Ontario/23866/04 (A/H1N1) segment 6 (NA) 2145.1 0.000000e+00 1321/1400 (94%)
EPI324808 A/swine/Iowa/A01049243/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1323/1403 (94%)
EPI318084 A/swine/Iowa/A01049120/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1323/1403 (94%)
EPI317028 A/swine/Iowa/A0109098/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1324/1404 (94%)
EPI317027 A/swine/Iowa/A0109097/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1324/1404 (94%)
EPI317021 A/swine/Iowa/A0109067/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1323/1403 (94%)
EPI317010 A/swine/Iowa/A0109015/2010 (A/H1N1) segment 6 (NA) 2139.5 0.000000e+00 1323/1403 (94%)
EPI318087 A/swine/Iowa/A01049137/2010 (A/H1N1) segment 6 (NA) 2134.0 0.000000e+00 1323/1404 (94%)
EPI318086 A/swine/Iowa/A01049128/2010 (A/H1N1 swl) segment 6 (NA) 2134.0 0.000000e+00 1323/1404 (94%)
EPI272365 A/swine/SD/1/2010 (A/H1N1) segment 6 (NA) 2128.5 0.000000e+00 1307/1382 (94%)
EPI180130 A/swine/Illinois/40043/2005 (A/H1N1) segment 6 (NA) 2124.8 0.000000e+00 1293/1363 (94%)
EPI325610 A/swine/MI/16072/2011 (A/H1N1 swl) segment 6 (NA) 2122.9 0.000000e+00 1322/1405 (94%)
EPI317016 A/swine/Iowa/A0109038/2010 (A/H1N1) segment 6 (NA) 2122.9 0.000000e+00 1320/1403 (94%)
EPI324816 A/swine/Iowa/A01049368/2011 (A/H1N1) segment 6 (NA) 2117.4 0.000000e+00 1320/1404 (94%)
EPI324809 A/swine/Iowa/A01049244/2010 (A/H1N1) segment 6 (NA) 2111.8 0.000000e+00 1318/1403 (93%)
EPI324269 A/swine/QC/705-B/2009 (A/H1N1) segment 6 (NA) 2111.8 0.000000e+00 1315/1400 (93%)
EPI317018 A/swine/Iowa/A0109049/2010 (A/H1N1) segment 6 (NA) 2111.8 0.000000e+00 1318/1403 (93%)
EPI324268 A/swine/QC/705-A/2009 (A/H1N1) segment 6 (NA) 2106.3 0.000000e+00 1314/1400 (93%)
EPI323965 A/swine/QC/368/2009 (A/H1N1) segment 6 (NA) 2102.6 0.000000e+00 1316/1402 (93%)
EPI324264 A/swine/QC/3193/2009 (A/H1N1) segment 6 (NA) 2100.8 0.000000e+00 1315/1402 (93%)
EPI324102 A/swine/QC/3453/2009 (A/H1N1) segment 6 (NA) 2100.8 0.000000e+00 1316/1403 (93%)
EPI323987 A/swine/QC/410-B/2009 (A/H1N1) segment 6 (NA) 2100.8 0.000000e+00 1315/1402 (93%)
EPI323980 A/swine/QC/398/2009 (A/H1N1) segment 6 (NA) 2100.8 0.000000e+00 1315/1402 (93%)
EPI324123 A/swine/QC/4110/2009 (A/H1N1) segment 6 (NA) 2097.1 0.000000e+00 1315/1402 (93%)
EPI323997 A/swine/QC/1488-2/2009 (A/H1N1) segment 6 (NA) 2097.1 0.000000e+00 1315/1402 (93%)
EPI315849 A/swine/South Dakota/7/2011 (A/H1N1) segment 6 (NA) 2097.1 0.000000e+00 1302/1382 (94%)
EPI324132 A/swine/QC/4150/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1315/1403 (93%)
EPI324114 A/swine/QC/3845/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1315/1403 (93%)
EPI324111 A/swine/QC/3777/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1315/1403 (93%)
EPI324098 A/swine/QC/3399-6/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1315/1403 (93%)
EPI324024 A/swine/QC/1533-1/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1315/1403 (93%)
EPI323984 A/swine/QC/410-A/2009 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1314/1402 (93%)
EPI281245 A/swine/Minnesota/02093/2008 (A/H1N1) segment 6 (NA) 2095.2 0.000000e+00 1312/1400 (93%)
EPI324007 A/swine/QC/1488-5/2009 (A/H1N1) segment 6 (NA) 2091.5 0.000000e+00 1314/1402 (93%)
EPI324126 A/swine/QC/4112/2009 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1315/1404 (93%)
EPI324117 A/swine/QC/4015-1/2009 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1314/1403 (93%)
EPI324108 A/swine/QC/3639-4/2009 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1314/1403 (93%)
EPI324091 A/swine/QC/3399-3/2009 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1314/1403 (93%)
EPI324073 A/swine/QC/1805-3/2009 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1315/1404 (93%)
EPI281249 A/swine/Minnesota/02053/2008 (A/H1N1) segment 6 (NA) 2089.7 0.000000e+00 1312/1401 (93%)
EPI324004 A/swine/QC/1488-4/2009 (A/H1N1) segment 6 (NA) 2086.0 0.000000e+00 1314/1403 (93%)
EPI324129 A/swine/QC/4113/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1314/1404 (93%)
EPI324120 A/swine/QC/4015-2/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1313/1403 (93%)
EPI324076 A/swine/QC/1805-4/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1314/1404 (93%)
EPI324070 A/swine/QC/1805-2/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1314/1404 (93%)
EPI324067 A/swine/QC/1805-1/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1314/1404 (93%)
EPI324064 A/swine/QC/1792-2/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1314/1404 (93%)
EPI324030 A/swine/QC/1588/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1312/1402 (93%)
EPI324027 A/swine/QC/1533-5/2009 (A/H1N1) segment 6 (NA) 2084.1 0.000000e+00 1313/1403 (93%)
EPI324266 A/swine/QC/729-B/2009 (A/H1N1) segment 6 (NA) 2080.4 0.000000e+00 1313/1403 (93%)
EPI324001 A/swine/QC/1488-3/2009 (A/H1N1) segment 6 (NA) 2080.4 0.000000e+00 1312/1402 (93%)
EPI324079 A/swine/QC/1805-5/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1313/1404 (93%)
EPI324061 A/swine/QC/1792-1/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1313/1404 (93%)
EPI324058 A/swine/QC/1697-5/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1311/1402 (93%)
EPI324055 A/swine/QC/1697-4/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1311/1402 (93%)
EPI324052 A/swine/QC/1697-3/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1311/1402 (93%)
EPI324045 A/swine/QC/1697-1/2009 (A/H1N1) segment 6 (NA) 2078.6 0.000000e+00 1311/1402 (93%)
EPI291828 A/Minnesota/03/2008 (A/H1N1) segment 6 (NA) 2076.8 0.000000e+00 1291/1374 (93%)

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PostPosted: Fri Sep 16, 2011 7:36 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27495
Location: Pittsburgh, PA USA
EPI291874 A/South Dakota/03/2008 (A/H1N1) segment 7 (MP) 1528.3 0.000000e+00 827/827 (100%)
EPI291804 A/Iowa/05/2007 (A/H1N1) segment 7 (MP) 1522.8 0.000000e+00 826/827 (99%)
EPI281227 A/swine/Iowa/02096/2008 (A/H1N1) segment 7 (MP) 1495.1 0.000000e+00 821/827 (99%)
EPI152070 A/swine/Kansas/Sg-00252/2007 (A/H1N1) segment 7 (MP) 1495.1 0.000000e+00 821/827 (99%)
EPI291827 A/Minnesota/03/2008 (A/H1N1) segment 7 (MP) 1489.5 0.000000e+00 820/827 (99%)
EPI318077 A/swine/Iowa/A01049160/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI302687 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI302678 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI302675 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI302666 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI293968 A/Minnesota/11/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI291890 A/Wisconsin/12/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI291862 A/Pennsylvania/14/2010 (A/H3N2) segment 7 (MP) 1484.0 0.000000e+00 819/827 (99%)
EPI324838 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 7 (MP) 1478.4 0.000000e+00 818/827 (98%)
EPI317039 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 7 (MP) 1478.4 0.000000e+00 818/827 (98%)
EPI312983 A/Pennsylvania/40/2010 (A/H3N2) segment 7 (MP) 1478.4 0.000000e+00 818/827 (98%)
EPI316956 A/swine/Iowa/A0109032/2010 (A/H3N2) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI316955 A/swine/Iowa/A0109031/2010 (A/H3N2) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI291899 A/Wisconsin/87/2005 (A/H1N1) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI291882 A/Texas/14/2008 (A/H1N1) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI289658 A/swine/Iowa/46519-4/2008 (A/H1N1) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI219371 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI219363 A/swine/Kansas/015252/2009 (A/H3N2) segment 7 (MP) 1472.9 0.000000e+00 817/827 (98%)
EPI255757 A/swine/MN/23506/2009 (A/H1N1) segment 7 (MP) 1467.4 0.000000e+00 816/827 (98%)
EPI184451 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 7 (MP) 1467.4 0.000000e+00 816/827 (98%)
EPI168648 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 7 (MP) 1467.4 0.000000e+00 816/827 (98%)
EPI158877 A/turkey/MN/366767/2005 (A/H3N2) segment 7 (MP) 1467.4 0.000000e+00 816/827 (98%)
EPI281228 A/swine/Nebraska/02013/2008 (A/H1N1) segment 7 (MP) 1463.7 0.000000e+00 812/822 (98%)
EPI323267 A/swine/Minnesota/66853/2006 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI318071 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI317043 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI314332 A/turkey/BC/1529-3/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI307932 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI295330 A/swine/South Dakota/152B/2009 (A/H1N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI292295 A/swine/Minnesota/44837-3/2009 (A/H1N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI292292 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI291820 A/Michigan/09/2007 (A/H1N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI291785 A/Illinois/09/2007 (A/H1N1) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI229373 A/turkey/OH/313053/2004 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI222685 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI220544 A/ferret/Iowa/15828/2008 (A/H1N1) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI155077 A/swine/Quebec/4001/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI103196 A/swine/Ontario/33853/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI103178 A/swine/Manitoba/12707/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI103160 A/swine/British Columbia/28103/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI103142 A/swine/Alberta/14722/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI103124 A/Ontario/RV1273/2005 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI101391 A/turkey/Ohio/313053/04 (A/H3N2) segment 7 (MP) 1461.8 0.000000e+00 815/827 (98%)
EPI325611 A/swine/MI/16072/2011 (A/H1N1 swl) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI323259 A/swine/Minnesota/578/2007 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI323258 A/swine/Minnesota/1300/2007 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI291904 A/Ohio/02/2007 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI291855 A/Ohio/01/2007 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI281235 A/swine/Ohio/02026/2008 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI281231 A/swine/Missouri/02060/2008 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI281230 A/swine/North Carolina/02023/2008 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI235274 A/swine/North Carolina/2003 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI228925 A/turkey/Illinois/2004 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI222638 A/swine/Kansas/77778/2007 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI184495 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI179357 A/swine/IL/07003243/2007 (A/H1N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI173661 A/swine/OH/511445/2007 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI153498 A/swine/Ohio/C62006/06 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI153497 A/swine/Ohio/75004/04 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI153496 A/swine/Ohio/24366/07 (A/H1N1) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI152069 A/swine/North Carolina/Sg-00251/2007 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI103214 A/turkey/Ontario/31232/2005 (A/H3N2) segment 7 (MP) 1456.3 0.000000e+00 814/827 (98%)
EPI227575 A/turkey/NC/353568/2005 (A/H3N2) segment 7 (MP) 1452.6 0.000000e+00 812/825 (98%)
EPI324840 A/swine/Minnesota/A01049462/2011 (A/H1N1) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI289655 A/swine/Iowa/46519-3/2008 (A/H1N1) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI222677 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI222654 A/swine/Minnesota/1145/2007 (A/H3N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI222647 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220886 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220878 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220862 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220854 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220846 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220838 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220830 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220798 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI220790 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 7 (MP) 1450.7 0.000000e+00 813/827 (98%)
EPI324156 A/SW/SK/11-16/2009 (A/H1N1) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI317033 A/swine/Iowa/A0109062/2010 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI317032 A/swine/Iowa/A0109060/2010 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI289661 A/swine/Missouri/46519-5/2009 (A/H1N1) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI281233 A/swine/Minnesota/02093/2008 (A/H1N1) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI281232 A/swine/Minnesota/02011/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI246078 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI246070 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI246062 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI234592 A/swine/SD/31813/2009 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220935 A/swine/Texas/050625/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220919 A/swine/Texas/008648/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220910 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220822 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220814 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220806 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI220782 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)
EPI168653 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 7 (MP) 1445.2 0.000000e+00 812/827 (98%)

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