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LOCUS JN032400 1202 bp cRNA linear VRL 12-JUN-2011 DEFINITION Influenza A virus (A/chicken/Indonesia/Timika_10/2006(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds. ACCESSION JN032400 VERSION JN032400.1 GI:334852310 KEYWORDS . SOURCE Influenza A virus (A/chicken/Indonesia/Timika_10/2006(H5N1)) ORGANISM Influenza A virus (A/chicken/Indonesia/Timika_10/2006(H5N1)) Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1202) AUTHORS Karo-Karo,D. and Burgess,G.W. TITLE Molecular epidemiology of avian influenza and Newcastle disease using samples transported without a cold chain JOURNAL Unpublished REFERENCE 2 (bases 1 to 1202) AUTHORS Karo-Karo,D. and Burgess,G.W. TITLE Direct Submission JOURNAL Submitted (26-MAY-2011) School Veterinary and Biomedical Science, James Cook University, Townsville, Queensland, Australia COMMENT Virus from collection of Center for Diagnostic Standard of Indonesian Agricultural Quarantine Agency. FEATURES Location/Qualifiers source 1..1202 /organism="Influenza A virus (A/chicken/Indonesia/Timika_10/2006(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Indonesia/Timika_10/2006" /serotype="H5N1" /host="chicken" /db_xref="taxon:1037388" /segment="4" /country="Indonesia" /collection_date="2006" gene <1..>1202 /gene="HA" CDS <1..>1202 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="AEH05557.1" /db_xref="GI:334852311" /translation="GVSLYFRDCSVAGWLLGNPMCDEFIKVKEWSYIVEKASPTNDLC YPGSFNDYEELKHLLSRIKHFEKIRIIPRSDWSDHETSGVSSACPYLGSPSFFRNVVW LTQKNSTYPIIKKSYKNTNQEDLLILWGIHHSNNVEEQTRLYQNLTTYISIGTSTLNQ RSVPKIATRTKVHGQSGRMDFFWTILNPNDTIYFESNGNFIAPEYAYKIVKKGDSAIM KSELEYGDCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQR ESRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGITNK VNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLD FHDSNVKNL" ORIGIN 1 ggagtgagcc tctattttag agattgtagt gtagctgggt ggctcctcgg gaacccaatg 61 tgtgacgaat tcatcaaagt aaaggaatgg tcttacatag tggagaaggc cagtccaacc 121 aatgacctct gttatccagg gagtttcaac gactatgaag aactgaaaca cctattgagc 181 agaataaaac attttgagaa aattcgaatc atccccagaa gtgattggtc tgatcatgaa 241 acctcgggag tgagctcagc atgtccatac ctgggaagtc cctccttttt tagaaatgtg 301 gtatggctta cccaaaagaa cagtacatac ccaataataa agaaaagcta caagaatacc 361 aaccaagaag atcttttgat actgtgggga attcaccatt ctaataatgt ggaagagcag 421 acaaggctat atcaaaacct aaccacctat atttccattg ggacatcaac actaaaccag 481 agatcggtac caaaaatagc tactagaacc aaagtacacg ggcaaagtgg aaggatggat 541 ttcttctgga caattttaaa tcctaatgat acaatctact tcgagagtaa tggaaatttc 601 attgctccag aatatgcata caaaattgtc aagaaagggg actcagcaat tatgaaaagt 661 gaattggaat atggtgactg caacactaaa tgtcaaactc caatgggggc gataaactct 721 agtatgccat tccacaacat acaccctctc actatcgggg aatgccccaa atatgtgaaa 781 tcaaacagat tagtccttgc aacagggctc agaaatagcc ctcaaagaga gagcagaagg 841 aaaaagagag gactatttgg agctatagca ggttttatag agggaggatg gcagggaatg 901 gtagatggtt ggtatgggta ccatcatagc aatgagcagg ggagtgggta cgctgcagat 961 aaagaatcca ctcaaaaggc aatagatgga atcaccaata aggtcaactc aatcattgac 1021 aagatgaaca ctcagtttga ggccgttgga agggaattta ataacttaga aaggagaata 1081 gagaatttaa acaagaagat ggaagacggg tttctagatg tttggactta taatgccgaa 1141 cttctggttc tcatggaaaa tgagagaact ctagactttc atgactcaaa tgttaagaac 1201 ct
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