Rhiza Labs FluTracker Forum

A recently deposted H5 sequence from Indonesia, A/chicken/Indonesia/Tanggerang_1/2007, has a 3 BP deletion which is identical to the deletion previously seen in H5N1 in Egypt (clade 2.2) and China (clade 7) strongly supporting acquisition by homologous recombination.

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LOCUS JF970241 1339 bp cRNA linear VRL 01-JUN-2011
DEFINITION Influenza A virus (A/chicken/Indonesia/Tanggerang_1/2007(H5N1))
segment 4 hemagglutinin (HA) gene, partial cds.
ACCESSION JF970241
VERSION JF970241.1 GI:333610022
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Indonesia/Tanggerang_1/2007(H5N1))
ORGANISM Influenza A virus (A/chicken/Indonesia/Tanggerang_1/2007(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1339)
AUTHORS Karo-Karo,D. and Burgess,G.W.
TITLE Molecular epidemiology of avian influenza and Newcastle disease
using samples transported without a cold chain
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1339)
AUTHORS Karo-Karo,D., Sudirman,S. and Burgess,G.W.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2011) School of Veterinary and Biomedical
Science, James Cook University, Townsville, Queensland, Australia
COMMENT Virus from collection of Center for Diagnostic Standard of
Indonesian Agricultural Quarantine Agency.
FEATURES Location/Qualifiers
source 1..1339
/organism="Influenza A virus
(A/chicken/Indonesia/Tanggerang_1/2007(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Indonesia/Tanggerang_1/2007"
/serotype="H5N1"
/host="chicken"
/db_xref="taxon:1035086"
/segment="4"
/country="Indonesia"
/collection_date="Dec-2007"
gene <1..>1339
/gene="HA"
CDS <1..>1339
/gene="HA"
/codon_start=2
/product="hemagglutinin"
/protein_id="AEF59488.1"
/db_xref="GI:333610023"
/translation="HCYPGSFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASGVSS
ACPYLGSPSFFRNVVWLIKKNSTYPTIKKTYNNTNQEDLLILWGIHHPNNEAEQTMLY
QNPTTYISIGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIA
PEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVK
SNRLVLATGLRNSPQRESRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYA
ADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWT
YNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMES
IRNGTYNYPQYSEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMIAG"
ORIGIN
1 ccactgttac ccagggagtt tcaacgacta tgaagaactg aaacacctat tgagcagaat
61 aaaccatttt gagaaaattc agatcatccc caaaagttct tggtccgatc atgaagcctc
121 aggagtgagc tcagcatgtc catacctggg aagtccctcc ttttttagaa atgtggtatg
181 gcttatcaaa aagaacagta cgtacccaac aataaagaaa acctacaata ataccaacca
241 agaagatctt ttgatactgt ggggaattca ccatcctaat aatgaggcag agcagacaat
301 gctatatcaa aacccaacca cctatatttc cattgggaca tcaacactaa accagagatt
361 ggtaccaaaa atagctacta gatccaaagt aaacgggcaa agtggaagga tggagttttt
421 ctggacaatt ttaaaaccaa atgatgcaat caacttcgag agtaatggaa atttcattgc
481 tccagaatat gcatacaaaa ttgtcaagaa aggggactca gcaattatga aaagtgaatt
541 ggaatatggt aactgcaaca ccaagtgtca aactccaatg ggggcgataa actctagtat
601 gccattccac aacatacacc ctctcaccat cggggaatgc cccaaatatg tgaaatcaaa
661 cagattagtc ctagcaacag ggctcagaaa tagccctcaa agagagagca gaaggaaaaa
721 gagaggtcta tttggagcta tagcaggttt tatagaggga ggatggcagg gaatggtaga
781 tggttggtat gggtaccacc atagcaatga gcaggggagt ggatacgctg cagacaaaga
841 atctactcaa aaggcaatag atggagtcac caataaggtc aactcaatta ttgacaaaat
901 gaacactcag tttgaggctg ttggaaggga atttaataat ttagaaagga gaatagagaa
961 tttaaacaag aagatggaag acgggtttct agatgtttgg acttataatg ccgaacttct
1021 ggttctcatg gaaaatgaga gaactctaga ctttcatgac tcaaatgtta agaacctcta
1081 tgacaaggtc cgactacagc ttagggataa tgcaaaggag ctgggtaacg gttgtttcga
1141 gttctatcac aaatgtgata atgaatgtat ggaaagtata aggaacggaa catacaacta
1201 tccgcagtat tcagaagaag caagattaaa aagagaggaa ataagtgggg taaagttgga
1261 atcaatagga acttatcaaa tactgtcaat ttactcaaca gtggcgagtt ccctagcact
1321 ggcaatcatg atagctggt

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3 bp deletion pedigree

EPI324802 A/ostrich/VRLCU/Egypt/2011 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321329 A/chicken/Indonesia/Tanggerang_1/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315697 A/chicken/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310237 A/chicken/Egypt/F8/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310236 A/chicken/Egypt/F7/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI296691 A/emu/Israel/552/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287381 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287380 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287377 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287374 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287370 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287369 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287368 A/chicken/Egypt/3982-7/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287358 A/chicken/Egypt/2095-50/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287352 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283825 A/chicken/Egypt/1022L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283822 A/chicken/Egypt/1058sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283821 A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283820 A/chicken/Egypt/1021L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283819 A/duck/Egypt/10157s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283818 A/chicken/Egypt/1020d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283817 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283815 A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283814 A/duck/Egypt/1025sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283813 A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283812 A/chicken/Egypt/1052g/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283811 A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283810 A/duck/Egypt/1097s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283808 A/chicken/Egypt/1034qd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283807 A/duck/Egypt/1020sd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283803 A/chicken/Egypt/1012sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283800 A/duck/Egypt/101565v/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283799 A/duck/Egypt/1011d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283798 A/chicken/Egypt/102d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283795 A/duck/Egypt/1053/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283794 A/chicken/Egypt/1042/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283793 A/chicken/Egypt/1036/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283792 A/chicken/Egypt/1035/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283791 A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283788 A/duck/Egypt/1022/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283786 A/environment/Egypt/105swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283785 A/environment/Egypt/104swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283784 A/duck/Egypt/103swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283782 A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283781 A/goose/Egypt/09134sml/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI266274 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255411 A/Egypt/N11981/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255400 A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255398 A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255394 A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255392 A/Egypt/N07908/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255390 A/Egypt/N07392/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255388 A/Egypt/N05912/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255384 A/Egypt/N04830/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255382 A/Egypt/N04434/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255379 A/Egypt/N03072/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255377 A/Egypt/N03071/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255375 A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255373 A/Egypt/N02554/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255371 A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255369 A/Egypt/N02038/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255367 A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255365 A/Egypt/N01644/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255363 A/Egypt/N01360/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255361 A/Egypt/N00270/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255359 A/Egypt/N00269/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI253925 A/equine/Egypt/av1/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246014 A/duck/Egypt/0969smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246012 A/duck/Egypt/0930smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246011 A/goose/Egypt/0912smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246010 A/chicken/Egypt/093smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246009 A/goose/Egypt/09102smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246008 A/duck/Egypt/0967smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246007 A/duck/Egypt/0945smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246006 A/duck/Egypt/09332sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246005 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246004 A/duck/Egypt/09274sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246003 A/duck/Egypt/09238sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245999 A/goose/Egypt/0910sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245997 A/chicken/Egypt/09485s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245996 A/duck/Egypt/09315s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245993 A/chicken/Egypt/092L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245991 A/duck/Egypt/0970-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245988 A/chicken/Egypt/0945-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245987 A/chicken/Egypt/0915-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245986 A/duck/Egypt/0912-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245985 A/chicken/Egypt/0910-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237644 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237565 A/chicken/Egypt/0987alb-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214910 A/goose/Egypt/0929-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214908 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214906 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214902 A/duck/Egypt/093L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214901 A/duck/Egypt/09349S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214900 A/duck/Egypt/09339S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214899 A/duck/Egypt/093-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214898 A/duck/Egypt/0926-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214895 A/duck/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214881 A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214880 A/chicken/Egypt/092-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184849 A/Egypt/N05056/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184845 A/Egypt/N04823/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184841 A/Egypt/N04527/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184837 A/Egypt/N04396/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184835 A/Egypt/N04395/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184834 A/Egypt/N04394/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184832 A/Egypt/N04316/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184830 A/Egypt/N03450/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184828 A/Egypt/N03439/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184826 A/Egypt/N03438/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184822 A/Egypt/N03272/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184820 A/Egypt/N03228/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184818 A/Egypt/N02752/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184816 A/Egypt/N02563/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184814 A/Egypt/N02407/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184810 A/Egypt/N01310/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184808 A/Egypt/N00606/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184806 A/Egypt/N00605/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184804 A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184802 A/Egypt/N00001/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182357 A/duck/Egypt/0821S-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182356 A/chicken/Egypt/0896-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182355 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182342 A/chicken/Egypt/0847-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165070 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165068 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI127758 A/chicken/Egypt/9400NAMRU3-CLEVB211/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125662 A/chicken/Egypt/R6/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125660 A/duck/Egypt/R5/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125658 A/goose/Egypt/R4/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125656 A/chicken/Egypt/R3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125654 A/chicken/Egypt/R2/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI122757 A/Egypt/2631-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI122753 A/Egypt/2629-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116470 A/Egypt/2621-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116452 A/Egypt/1394-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI115007 A/Egypt/0636-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)

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Additional sequences with 3 BP deletion

EPI321332 A/chicken/Indonesia/Timika_10/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321330 A/chicken/Indonesia/Tanggerang_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321328 A/chicken/Indonesia/Sukabumi_3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321327 A/chicken/Indonesia/Sukabumi_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)

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T500C

EPI324802 A/ostrich/VRLCU/Egypt/2011 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321332 A/chicken/Indonesia/Timika_10/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321330 A/chicken/Indonesia/Tanggerang_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321328 A/chicken/Indonesia/Sukabumi_3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321327 A/chicken/Indonesia/Sukabumi_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315963 A/duck/Egypt/0897-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315697 A/chicken/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310237 A/chicken/Egypt/F8/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310236 A/chicken/Egypt/F7/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI296691 A/emu/Israel/552/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287384 A/poultry/Egypt/4794-18/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287381 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287380 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287377 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287374 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287370 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287369 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287368 A/chicken/Egypt/3982-7/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287367 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287364 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287358 A/chicken/Egypt/2095-50/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287352 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI287349 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283825 A/chicken/Egypt/1022L/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283822 A/chicken/Egypt/1058sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283821 A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283820 A/chicken/Egypt/1021L/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283819 A/duck/Egypt/10157s/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283818 A/chicken/Egypt/1020d/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283817 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283815 A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283814 A/duck/Egypt/1025sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283813 A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283812 A/chicken/Egypt/1052g/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283811 A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283810 A/duck/Egypt/1097s/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283808 A/chicken/Egypt/1034qd/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283807 A/duck/Egypt/1020sd/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283805 A/chicken/Egypt/101604v/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283803 A/chicken/Egypt/1012sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283800 A/duck/Egypt/101565v/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283799 A/duck/Egypt/1011d/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283798 A/chicken/Egypt/102d/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283795 A/duck/Egypt/1053/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283794 A/chicken/Egypt/1042/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283793 A/chicken/Egypt/1036/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283792 A/chicken/Egypt/1035/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283791 A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283789 A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283788 A/duck/Egypt/1022/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283786 A/environment/Egypt/105swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283785 A/environment/Egypt/104swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283784 A/duck/Egypt/103swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283782 A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI283781 A/goose/Egypt/09134sml/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI266274 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255420 A/Egypt/N15262/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255411 A/Egypt/N11981/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255400 A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255398 A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255394 A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255392 A/Egypt/N07908/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255390 A/Egypt/N07392/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255388 A/Egypt/N05912/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255384 A/Egypt/N04830/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255382 A/Egypt/N04434/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255379 A/Egypt/N03072/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255377 A/Egypt/N03071/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255375 A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255373 A/Egypt/N02554/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255371 A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255369 A/Egypt/N02038/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255367 A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255365 A/Egypt/N01644/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255361 A/Egypt/N00270/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI255359 A/Egypt/N00269/2010 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246014 A/duck/Egypt/0969smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246011 A/goose/Egypt/0912smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246010 A/chicken/Egypt/093smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246009 A/goose/Egypt/09102smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246008 A/duck/Egypt/0967smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246007 A/duck/Egypt/0945smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246006 A/duck/Egypt/09332sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246005 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246004 A/duck/Egypt/09274sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI246003 A/duck/Egypt/09238sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245999 A/goose/Egypt/0910sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245997 A/chicken/Egypt/09485s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245996 A/duck/Egypt/09315s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245993 A/chicken/Egypt/092L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245991 A/duck/Egypt/0970-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245988 A/chicken/Egypt/0945-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245987 A/chicken/Egypt/0915-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245986 A/duck/Egypt/0912-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI245985 A/chicken/Egypt/0910-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI237644 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI237565 A/chicken/Egypt/0987alb-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI227301 A/Mallard/Huadong/hn/2005 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214910 A/goose/Egypt/0929-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214908 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214906 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214902 A/duck/Egypt/093L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214901 A/duck/Egypt/09349S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214900 A/duck/Egypt/09339S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214899 A/duck/Egypt/093-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214898 A/duck/Egypt/0926-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214895 A/duck/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214881 A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI214880 A/chicken/Egypt/092-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184849 A/Egypt/N05056/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184845 A/Egypt/N04823/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184841 A/Egypt/N04527/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184837 A/Egypt/N04396/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184835 A/Egypt/N04395/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184834 A/Egypt/N04394/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184832 A/Egypt/N04316/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184830 A/Egypt/N03450/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184828 A/Egypt/N03439/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184826 A/Egypt/N03438/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184822 A/Egypt/N03272/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184820 A/Egypt/N03228/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184818 A/Egypt/N02752/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184816 A/Egypt/N02563/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184814 A/Egypt/N02407/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184812 A/Egypt/N02039/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184810 A/Egypt/N01310/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184808 A/Egypt/N00606/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184806 A/Egypt/N00605/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184804 A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI184802 A/Egypt/N00001/2009 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI182357 A/duck/Egypt/0821S-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI182356 A/chicken/Egypt/0896-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI182355 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI182342 A/chicken/Egypt/0847-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI180252 A/chicken/Vietnam/NCVD-swab19/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI174642 A/chicken/Anhui/1089/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI165070 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI165068 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI127758 A/chicken/Egypt/9400NAMRU3-CLEVB211/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI125662 A/chicken/Egypt/R6/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI125660 A/duck/Egypt/R5/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI125654 A/chicken/Egypt/R2/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI123495 A/Viet Nam/1203/2004 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI122753 A/Egypt/2629-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI116470 A/Egypt/2621-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI116452 A/Egypt/1394-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI115007 A/Egypt/0636-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI49164 A/Indonesia/CDC938E/2006 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI49145 A/Indonesia/CDC938/2006 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI21066 A/duck/Guangxi/07/1999 (A/H5N1) segment 4 (HA) 27.0 6.09795
EPI6647 A/Environment/Hong Kong/437-10/99 (A/H5N1) segment 4 (HA) 27.0 6.09795

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The above lists demonstrates a shared polymorphism between clade 2.2 sequences in Egypt and clade 2.1 sequences in Indonesia which have the shared 3 BP deletion, confirming homologous recombination.

_________________
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The above sequences are closely related to the unpublished 2008 sequences from Indonesia.

_________________
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More linkage between Egypt and Indonesia

EPI321332 A/chicken/Indonesia/Timika_10/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321330 A/chicken/Indonesia/Tanggerang_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321328 A/chicken/Indonesia/Sukabumi_3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321327 A/chicken/Indonesia/Sukabumi_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315963 A/duck/Egypt/0897-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315697 A/chicken/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310237 A/chicken/Egypt/F8/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310236 A/chicken/Egypt/F7/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI296691 A/emu/Israel/552/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287692 A/chicken/West Bengal/239022/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287684 A/chicken/West Bengal/239020/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287579 A/chicken/West Bengal/81760/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287381 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287380 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287377 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287374 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287370 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287369 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287368 A/chicken/Egypt/3982-7/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287367 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287364 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287358 A/chicken/Egypt/2095-50/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287352 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI284541 A/duck/Vietnam/NCVD-146/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283825 A/chicken/Egypt/1022L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283822 A/chicken/Egypt/1058sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283821 A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283820 A/chicken/Egypt/1021L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283819 A/duck/Egypt/10157s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283818 A/chicken/Egypt/1020d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283817 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283815 A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283814 A/duck/Egypt/1025sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283813 A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283812 A/chicken/Egypt/1052g/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283811 A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283810 A/duck/Egypt/1097s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283808 A/chicken/Egypt/1034qd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283807 A/duck/Egypt/1020sd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283805 A/chicken/Egypt/101604v/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283803 A/chicken/Egypt/1012sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283800 A/duck/Egypt/101565v/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283799 A/duck/Egypt/1011d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283798 A/chicken/Egypt/102d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283795 A/duck/Egypt/1053/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283793 A/chicken/Egypt/1036/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283792 A/chicken/Egypt/1035/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283791 A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283789 A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283788 A/duck/Egypt/1022/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283786 A/environment/Egypt/105swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283785 A/environment/Egypt/104swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283784 A/duck/Egypt/103swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283782 A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283781 A/goose/Egypt/09134sml/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI272152 A/chicken/Guangdong/Q1/2008 (A/H5) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI266274 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255420 A/Egypt/N15262/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255411 A/Egypt/N11981/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255400 A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255398 A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255394 A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255392 A/Egypt/N07908/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255390 A/Egypt/N07392/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255388 A/Egypt/N05912/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255384 A/Egypt/N04830/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255382 A/Egypt/N04434/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255379 A/Egypt/N03072/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255377 A/Egypt/N03071/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255375 A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255373 A/Egypt/N02554/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255371 A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255369 A/Egypt/N02038/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255367 A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255365 A/Egypt/N01644/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255363 A/Egypt/N01360/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255361 A/Egypt/N00270/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255359 A/Egypt/N00269/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI253925 A/equine/Egypt/av1/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI251453 A/reassortant/IDCDC-RG13(Egypt/3300-NAMRU3/2008 x Puerto Rico/8/1934) (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246014 A/duck/Egypt/0969smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246012 A/duck/Egypt/0930smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246011 A/goose/Egypt/0912smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246010 A/chicken/Egypt/093smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246009 A/goose/Egypt/09102smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246008 A/duck/Egypt/0967smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246007 A/duck/Egypt/0945smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246006 A/duck/Egypt/09332sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246005 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246004 A/duck/Egypt/09274sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246003 A/duck/Egypt/09238sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245999 A/goose/Egypt/0910sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245997 A/chicken/Egypt/09485s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245996 A/duck/Egypt/09315s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245993 A/chicken/Egypt/092L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245991 A/duck/Egypt/0970-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245988 A/chicken/Egypt/0945-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245987 A/chicken/Egypt/0915-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245986 A/duck/Egypt/0912-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245985 A/chicken/Egypt/0910-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239213 A/environment/Hong Kong/486/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239200 A/environment/Hong Kong/156/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239086 A/chicken/Hong Kong/915/1997 (A/H5) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239085 A/chicken/Hong Kong/786-2/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239031 A/Hong Kong/485/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI239030 A/Hong Kong/483/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237644 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237565 A/chicken/Egypt/0987alb-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI234502 A/Swan/Indonesia/Malang1631-61/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI234500 A/quail/West Java/Smigq1/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI233852 A/chicken/Nigeria/08RS848-74/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI225049 A/chicken/West Java/SMI-CSLK-EB/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI224607 A/Chicken/West Java/SMI-PAT/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI224606 A/Chicken/West Java/SMI-CSLK-EC/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI224605 A/Chicken/West Java/PWT-WIJ/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214910 A/goose/Egypt/0929-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214908 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214906 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214902 A/duck/Egypt/093L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214901 A/duck/Egypt/09349S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214900 A/duck/Egypt/09339S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214899 A/duck/Egypt/093-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214898 A/duck/Egypt/0926-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214895 A/duck/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214881 A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214880 A/chicken/Egypt/092-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI190660 A/chicken/Bangladesh/362/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI190651 A/chicken/Bangladesh/FD(J)-2550BL-411/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184849 A/Egypt/N05056/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184845 A/Egypt/N04823/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184841 A/Egypt/N04527/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184837 A/Egypt/N04396/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184835 A/Egypt/N04395/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184834 A/Egypt/N04394/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184832 A/Egypt/N04316/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184830 A/Egypt/N03450/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184828 A/Egypt/N03439/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184826 A/Egypt/N03438/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184822 A/Egypt/N03272/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184820 A/Egypt/N03228/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184818 A/Egypt/N02752/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184816 A/Egypt/N02563/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184814 A/Egypt/N02407/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184812 A/Egypt/N02039/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184810 A/Egypt/N01310/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184808 A/Egypt/N00606/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184806 A/Egypt/N00605/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184804 A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184802 A/Egypt/N00001/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182357 A/duck/Egypt/0821S-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182356 A/chicken/Egypt/0896-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182355 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182344 A/chicken/Egypt/0855-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182342 A/chicken/Egypt/0847-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI180887 A/chicken/Laos/P0130/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI173593 A/chicken/Egypt/7NLQP-CLEVB305/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI171210 A/chicken/Pyigyitagon/204/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI167992 A/little egret/Hong Kong/8550/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165072 A/Egypt/3300-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165070 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165068 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI140583 A/duck/Vietnam/1771/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI135957 A/duck/Hunan/1386/2003 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI135444 A/goose/Shantou/157/2002 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI135140 A/chicken/Shantou/904/2001 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI127758 A/chicken/Egypt/9400NAMRU3-CLEVB211/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI126288 A/quail/Korea/KJ4/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125662 A/chicken/Egypt/R6/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125660 A/duck/Egypt/R5/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125658 A/goose/Egypt/R4/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125656 A/chicken/Egypt/R3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125654 A/chicken/Egypt/R2/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI123760 A/Chicken/Vietnam/Long An 636/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI122757 A/Egypt/2631-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI122753 A/Egypt/2629-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116470 A/Egypt/2621-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116452 A/Egypt/1394-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI115007 A/Egypt/0636-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108405 A/duck/Yunnan/2273/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108189 A/goose/Yunnan/5525/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108187 A/goose/Yunnan/5491/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108185 A/goose/Yunnan/5400/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108183 A/goose/Yunnan/5380/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108181 A/goose/Yunnan/5351/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108179 A/goose/Yunnan/5330/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI108177 A/goose/Yunnan/5314/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI107957 A/crested myna/Hong Kong/540/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI107891 A/goose/Yunnan/5539/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI107889 A/goose/Yunnan/5299/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI107885 A/duck/Yunnan/5236/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI107883 A/duck/Yunnan/5133/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI105622 A/common bussard/Bavaria/2/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI101875 A/duck/Vietnam/8/05 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI101859 A/goose/Vietnam/3/05 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI101843 A/duck/Viet Nam/1/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI14252 A/turkey/Germany/R1077/06 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI10311 A/Duck/Hong Kong/573.4/01 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI6629 A/Environment/Hong Kong/437-8/99 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5507 A/Hong Kong/514/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5505 A/Hong Kong/485/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5503 A/Hong Kong/532/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5501 A/Hong Kong/503/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5499 A/Hong Kong/542/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5497 A/Hong Kong/491/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5495 A/Hong Kong/97/98 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5493 A/Hong Kong/507/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5491 A/Hong Kong/538/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5489 A/Hong Kong/516/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5487 A/Hong Kong/488/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI5485 A/Hong Kong/486/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4985 A/Silky Chicken/Hong Kong/p17/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4983 A/Goose/Hong Kong/w355/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4981 A/Duck/Hong Kong/y283/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4979 A/Duck/Hong Kong/p46/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4977 A/Chicken/Hong Kong/y388/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4975 A/Chicken/Hong Kong/y385/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4973 A/Chicken/Hong Kong/976/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4971 A/Chicken/Hong Kong/1203/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4863 A/Hong Kong/485/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4843 A/Hong Kong/486/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4841 A/Hong Kong/483/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4839 A/Hong Kong/481/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4789 A/chicken/Hong Kong/990/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4787 A/chicken/Hong Kong/915/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4785 A/Chicken/Hong Kong/786/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4783 A/Chicken/Hong Kong/728/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4387 A/chicken/Hong Kong/258/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4353 A/Chicken/Hong Kong/728/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4351 A/Hong Kong/482/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4349 A/Hong Kong/483/1997 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4347 A/Hong Kong/481/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4329 A/Hong Kong/156/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4311 A/Chicken/Hong Kong/220/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4196 A/Hong Kong/156/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI4186 A/Hong Kong/156/97 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)

_________________
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More linkage between Egypt and Indonesia

EPI324802 A/ostrich/VRLCU/Egypt/2011 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321332 A/chicken/Indonesia/Timika_10/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321330 A/chicken/Indonesia/Tanggerang_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321328 A/chicken/Indonesia/Sukabumi_3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI321327 A/chicken/Indonesia/Sukabumi_10/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315963 A/duck/Egypt/0897-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI315697 A/chicken/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310237 A/chicken/Egypt/F8/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI310236 A/chicken/Egypt/F7/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI296691 A/emu/Israel/552/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287384 A/poultry/Egypt/4794-18/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287381 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287380 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287377 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287374 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287370 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287369 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287368 A/chicken/Egypt/3982-7/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287367 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287364 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287358 A/chicken/Egypt/2095-50/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287352 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI287349 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283825 A/chicken/Egypt/1022L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283822 A/chicken/Egypt/1058sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283821 A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283820 A/chicken/Egypt/1021L/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283819 A/duck/Egypt/10157s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283818 A/chicken/Egypt/1020d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283817 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283815 A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283814 A/duck/Egypt/1025sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283813 A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283812 A/chicken/Egypt/1052g/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283811 A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283810 A/duck/Egypt/1097s/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283808 A/chicken/Egypt/1034qd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283807 A/duck/Egypt/1020sd/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283805 A/chicken/Egypt/101604v/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283803 A/chicken/Egypt/1012sf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283800 A/duck/Egypt/101565v/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283799 A/duck/Egypt/1011d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283798 A/chicken/Egypt/102d/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283795 A/duck/Egypt/1053/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283794 A/chicken/Egypt/1042/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283793 A/chicken/Egypt/1036/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283792 A/chicken/Egypt/1035/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283791 A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283789 A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283788 A/duck/Egypt/1022/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283786 A/environment/Egypt/105swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283785 A/environment/Egypt/104swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283784 A/duck/Egypt/103swf/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283782 A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI283781 A/goose/Egypt/09134sml/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI266274 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255420 A/Egypt/N15262/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255411 A/Egypt/N11981/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255400 A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255398 A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255394 A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255392 A/Egypt/N07908/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255390 A/Egypt/N07392/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255388 A/Egypt/N05912/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255384 A/Egypt/N04830/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255382 A/Egypt/N04434/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255379 A/Egypt/N03072/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255377 A/Egypt/N03071/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255375 A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255373 A/Egypt/N02554/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255371 A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255369 A/Egypt/N02038/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255367 A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255365 A/Egypt/N01644/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255361 A/Egypt/N00270/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI255359 A/Egypt/N00269/2010 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246014 A/duck/Egypt/0969smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246011 A/goose/Egypt/0912smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246010 A/chicken/Egypt/093smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246009 A/goose/Egypt/09102smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246008 A/duck/Egypt/0967smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246007 A/duck/Egypt/0945smf-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246006 A/duck/Egypt/09332sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246005 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246004 A/duck/Egypt/09274sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI246003 A/duck/Egypt/09238sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245999 A/goose/Egypt/0910sm-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245997 A/chicken/Egypt/09485s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245996 A/duck/Egypt/09315s-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245993 A/chicken/Egypt/092L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245991 A/duck/Egypt/0970-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245988 A/chicken/Egypt/0945-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245987 A/chicken/Egypt/0915-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245986 A/duck/Egypt/0912-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI245985 A/chicken/Egypt/0910-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237644 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI237565 A/chicken/Egypt/0987alb-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI227301 A/Mallard/Huadong/hn/2005 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214910 A/goose/Egypt/0929-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214908 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214906 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214902 A/duck/Egypt/093L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214901 A/duck/Egypt/09349S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214900 A/duck/Egypt/09339S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214899 A/duck/Egypt/093-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214898 A/duck/Egypt/0926-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214895 A/duck/Egypt/0918-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214881 A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI214880 A/chicken/Egypt/092-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184849 A/Egypt/N05056/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184845 A/Egypt/N04823/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184841 A/Egypt/N04527/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184837 A/Egypt/N04396/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184835 A/Egypt/N04395/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184834 A/Egypt/N04394/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184832 A/Egypt/N04316/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184830 A/Egypt/N03450/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184828 A/Egypt/N03439/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184826 A/Egypt/N03438/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184822 A/Egypt/N03272/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184820 A/Egypt/N03228/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184818 A/Egypt/N02752/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184816 A/Egypt/N02563/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184814 A/Egypt/N02407/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184812 A/Egypt/N02039/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184810 A/Egypt/N01310/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184808 A/Egypt/N00606/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184806 A/Egypt/N00605/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184804 A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI184802 A/Egypt/N00001/2009 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182357 A/duck/Egypt/0821S-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182356 A/chicken/Egypt/0896-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182355 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI182342 A/chicken/Egypt/0847-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI180252 A/chicken/Vietnam/NCVD-swab19/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI174642 A/chicken/Anhui/1089/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165070 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI165068 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI127758 A/chicken/Egypt/9400NAMRU3-CLEVB211/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125662 A/chicken/Egypt/R6/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125660 A/duck/Egypt/R5/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI125654 A/chicken/Egypt/R2/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI123495 A/Viet Nam/1203/2004 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI122753 A/Egypt/2629-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116470 A/Egypt/2621-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI116452 A/Egypt/1394-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI115007 A/Egypt/0636-NAMRU3/2007 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI49164 A/Indonesia/CDC938E/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI49145 A/Indonesia/CDC938/2006 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI21066 A/duck/Guangxi/07/1999 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)
EPI6647 A/Environment/Hong Kong/437-10/99 (A/H5N1) segment 4 (HA) 27.0 6.677357e+00 14/14 (100%)

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Note that the pedigrees dominated by Egyptian sequences are those Egyptian sequences with the 3 BP deletion. Thus, the Indonesian sequence flew into Egypt and was converted into Egyptian H5N1 via homologous recombination.

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