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niman
 Post subject: Chihuahua H1N1 In Japan
PostPosted: Fri Jul 01, 2011 8:11 am 
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NIID released a series of HA and NA sequences from 2011. Included was A/FUKUI/67/2011 which is in the Chihuahua sub-clade and the HA sequence included K149N.

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niman
PostPosted: Fri Jul 01, 2011 8:12 am 
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Sample was collected March 1, 2011, which coincides with the appearance in Mexico.

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niman
PostPosted: Fri Jul 01, 2011 8:20 am 
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The partial HA sequence has the expected non-synonymous markers (N34D, K149N, S165N, A189T, V275I) in the Chihuahua clade.

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niman
PostPosted: Fri Jul 01, 2011 9:01 am 
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NA sequence is also Chihuahua (no reassortment)

T900C
EPI321457 A/FUKUI/67/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320163 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320135 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320120 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320103 A/New York/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320047 A/Mexico/1946/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320041 A/Massachusetts/09/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320038 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319993 A/Arizona/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319991 A/Alaska/14/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319988 A/Alaska/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316423 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316386 A/New Jersey/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315841 A/Mexico/InDRE1947/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315839 A/Mexico/InDRE1946/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315837 A/Mexico/InDRE1945/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310172 A/Wisconsin/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310135 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310132 A/Utah/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310129 A/Texas/07/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310102 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310092 A/Oregon/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310051 A/New York/01/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310048 A/New Jersey/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310001 A/Massachusetts/06/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309969 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309945 A/Maine/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI304092 A/Canada-ON/RV2888/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI295434 A/Bangladesh/2005/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI294888 A/Anas platyrhynchos/Belgium/04328 pcs17/2010 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283422 A/pheasant/Hong Kong/SSP44/2002 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283414 A/quail/Hong Kong/YU421/2002 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283406 A/quail/Hong Kong/YU404/2002 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283390 A/chicken/Hong Kong/SF4/2001 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283382 A/chicken/Hong Kong/SF3/2001 (A/H6) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283374 A/guinea fowl/Hong Kong/NT897/2001 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283366 A/quail/Hong Kong/CSW106/2001 (A/H6N4) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283342 A/quail/Hong Kong/SF104/2001 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283334 A/quail/Hong Kong/FB801/2001 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI283326 A/quail/Hong Kong/FB611/2001 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI278644 A/swine/Germany-TH/R2241/09 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI278637 A/swine/Germany-NI/R211/09 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI277643 A/Bishkek/WR0881T/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI255144 A/swine/Thailand/CU-RA204/2010 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI255136 A/swine/Thailand/CU-RA20/2009 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI248492 A/swine/Germany-BB/siv-leipz11308/09 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI246886 A/New York/6810/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI246798 A/New York/6546/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI246742 A/New York/6214/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239868 A/turkey/England/50-92/1991 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239209 A/environment/Hong Kong/486/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239193 A/environment/Hong Kong/156/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239079 A/chicken/Hong Kong/786-2/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239078 A/chicken/China/27402/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239032 A/Hong Kong/485/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI239029 A/Hong Kong/483/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI212156 A/Catalonia/S1333/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI212153 A/Catalonia/S1331/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI175926 A/swine/Spain/WVL6/1991 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI164399 A/turkey/England/N50-92/1991 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI164156 A/turkey/England/50-92/1991 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI121010 A/quail/Shantou/1821/2000 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI121008 A/quail/Shantou/1808/2000 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI12180 A/quail/Hong Kong/SF595/00 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI12176 A/quail/Hong Kong/1721-30/99 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI12174 A/quail/Hong Kong/1721-20/99 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI12172 A/pheasant/Hong Kong/SH39/99 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI8164 A/Hong Kong/516/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI7456 A/Teal/Hong Kong/W312/97 (A/H6N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5483 A/Hong Kong/542/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5481 A/Hong Kong/514/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5479 A/Hong Kong/483/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5477 A/Hong Kong/532/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5475 A/Hong Kong/503/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5473 A/Hong Kong/491/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5471 A/Hong Kong/485/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5469 A/Hong Kong/481/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5465 A/Hong Kong/97/98 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5463 A/Hong Kong/516/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5461 A/Hong Kong/507/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5459 A/Hong Kong/486/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5457 A/Hong Kong/488/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5455 A/Hong Kong/482/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI5001 A/Goose/Hong Kong/w355/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4999 A/Duck/Hong Kong/y283/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4997 A/Duck/Hong Kong/p46/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4993 A/chicken/Hong Kong/915/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4991 A/Chicken/Hong Kong/786/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4989 A/Chicken/Hong Kong/728/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4987 A/Chicken/Hong Kong/220/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4831 A/Hong Kong/486/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4829 A/Hong Kong/485/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4827 A/Hong Kong/483/1997 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4825 A/Hong Kong/482/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4823 A/Hong Kong/481/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4389 A/chicken/Hong Kong/258/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4331 A/Hong Kong/156/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4313 A/Chicken/Hong Kong/220/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4198 A/Hong Kong/156/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI4184 A/Hong Kong/156/97 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 9:04 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
C981T

EPI321457 A/FUKUI/67/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320163 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320135 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320120 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320103 A/New York/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320047 A/Mexico/1946/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320041 A/Massachusetts/09/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320038 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319993 A/Arizona/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319991 A/Alaska/14/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319988 A/Alaska/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316423 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316386 A/New Jersey/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315839 A/Mexico/InDRE1946/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315837 A/Mexico/InDRE1945/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310172 A/Wisconsin/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310135 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310132 A/Utah/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310129 A/Texas/07/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310102 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310092 A/Oregon/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310054 A/New York/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310048 A/New Jersey/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310001 A/Massachusetts/06/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309969 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309945 A/Maine/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 9:07 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
Combination of C981T and T990C

EPI321457 A/FUKUI/67/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320163 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320135 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320120 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320103 A/New York/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320047 A/Mexico/1946/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320041 A/Massachusetts/09/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320038 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319993 A/Arizona/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319991 A/Alaska/14/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319988 A/Alaska/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316423 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316386 A/New Jersey/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315839 A/Mexico/InDRE1946/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315837 A/Mexico/InDRE1945/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310172 A/Wisconsin/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310135 A/Vermont/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310132 A/Utah/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310129 A/Texas/07/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310102 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310092 A/Oregon/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310054 A/New York/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310048 A/New Jersey/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310001 A/Massachusetts/06/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309969 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309945 A/Maine/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 9:10 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27558
Location: Pittsburgh, PA USA
G1359T

EPI321457 A/FUKUI/67/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320135 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320120 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320047 A/Mexico/1946/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI320038 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319993 A/Arizona/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319991 A/Alaska/14/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI319988 A/Alaska/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316423 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI316386 A/New Jersey/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315839 A/Mexico/InDRE1946/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI315837 A/Mexico/InDRE1945/2011 (A/H1N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310132 A/Utah/08/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310129 A/Texas/07/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310102 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI310092 A/Oregon/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI309969 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)
EPI225070 A/duck/Egypt/2253-3/2006 (A/H5N1) segment 6 (NA) 27.0 6.593256e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 12:23 pm 
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C135T

EPI321458 A/FUKUI/67/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320136 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320121 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320039 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI319994 A/Arizona/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI319989 A/Alaska/12/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316451 A/Texas/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316424 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316387 A/New Jersey/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315840 A/Mexico/InDRE1947/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315838 A/Mexico/InDRE1946/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315836 A/Mexico/InDRE1945/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 12:27 pm 
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K149N

EPI321458 A/FUKUI/67/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320136 A/Pennsylvania/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320121 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI320039 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI319994 A/Arizona/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI319989 A/Alaska/12/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316818 A/Mexico/InDRE2415/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316816 A/Mexico/InDRE2413/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316811 A/Mexico/InDRE2408/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316809 A/Mexico/InDRE2407/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316451 A/Texas/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316424 A/Pennsylvania/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI316387 A/New Jersey/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315913 A/Mexico/InDRE2222/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315901 A/Mexico/InDRE2200/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315898 A/Mexico/InDRE2197/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315895 A/Mexico/InDRE2195/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315891 A/Mexico/InDRE2192/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315840 A/Mexico/InDRE1947/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315838 A/Mexico/InDRE1946/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI315836 A/Mexico/InDRE1945/2011 (A/H1N1) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI266546 A/Boston/115/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)
EPI218962 A/Wisconsin/629-D02206/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.594347e+00 14/14 (100%)

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niman
PostPosted: Fri Jul 01, 2011 2:23 pm 
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niman wrote:
Sample was collected March 1, 2011, which coincides with the appearance in Mexico.

A/FUKUI/67/2011 was one of four March, 2011 sequences released by NIID.

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