Rhiza Labs FluTracker Forum

The initial H1N1 sequences from Chihuahua, Mexico defined a novel sub-clade. However, subsequent sequences identified a second sub-clade which was present in several patients. Today the CDC released a series of sequences from New Mexico, which matched this second sub-clade, demonstrating circulation in the US prior to the detection in Mexico. Moreover, the sub-clade was circulating in China at the end of 2010.

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China connection

LOCUS JF346675 1739 bp cRNA linear VRL 01-MAR-2011
DEFINITION Influenza A virus (A/HuZhou/01/2010(H1N1)) segment 4 hemagglutinin
(HA) gene, complete cds.
ACCESSION JF346675
VERSION JF346675.1 GI:324033789
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/HuZhou/01/2010(H1N1))
ORGANISM Influenza A virus (A/HuZhou/01/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1739)
AUTHORS Chen,L., Xu,D., Ji,L. and Wu,X.
TITLE Analysis on HA gene of influenza A (H1N1) of Huzhou
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1739)
AUTHORS Chen,L., Xu,D., Ji,L. and Wu,X.
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2011) Microbe Laboratory, Huzhou Center for
Disease Control and Prevention, 999 Chang-Xing Street, Huzhou,
ZheJiang 313000, China
FEATURES Location/Qualifiers
source 1..1739
/organism="Influenza A virus (A/HuZhou/01/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/HuZhou/01/2010"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:986183"
/segment="4"
/country="China"
/collection_date="Dec-2010"
/PCR_primers="fwd_name: 1f, fwd_seq: atgaaggcaatactagtagt,
fwd_name: 2f, fwd_seq: agggagaatgaactattactg, fwd_name:
3f, fwd_seq: tcaatctagaggcctatttg, rev_name: 1r, rev_seq:
gtcggagggtaaagtttat, rev_name: 2r, rev_seq:
atggtgtttacgctattgtg, rev_name: 3r, rev_seq:
gtaatcctaaagtcttcgta"
/note="lineage: swl"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADY16853.1"
/db_xref="GI:324033790"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDPNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSTSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYAFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTSVHDCNTTCQTPKGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAFDKI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca tagctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaaga tttgagatat tccccaagac aagttcatgg
421 cccaatcatg acccgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaca
541 tcctatatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actagtgctg accaacaaag tctctatcag aatgcagatg catatgcttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt gccgagatat gcattcgcaa tggaaagaaa tgcgggatct
841 ggtattatca tttcagatac atcagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatgtacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatctc gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcatcat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgcctttgac aagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagtta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtattta acattaggat ttcagaagca tgagaaaaac acccttgtt

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G390A

EPI320095 A/New Mexico/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320093 A/New Mexico/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320085 A/New Mexico/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320077 A/New Mexico/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI318100 A/swine/Iowa/A01049148/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI318099 A/swine/Iowa/A01049137/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI318098 A/swine/Iowa/A01049128/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI318096 A/swine/Iowa/A01049120/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317268 A/swine/Saitama/21/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317267 A/swine/Saitama/1/2000 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317265 A/swine/Okinawa/1/2005 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317189 A/swine/Guangdong/34/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317006 A/swine/Minnesota/A0109101/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317005 A/swine/Iowa/A0109098/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI317004 A/swine/Iowa/A0109097/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316998 A/swine/Iowa/A0109067/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316995 A/swine/Iowa/A0109049/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316993 A/swine/Iowa/A0109038/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316987 A/swine/Iowa/A0109015/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316824 A/Mexico/InDRE2425/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316822 A/Mexico/InDRE2424/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316820 A/Mexico/InDRE2419/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316329 A/Alabama/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315906 A/Mexico/InDRE2214/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315893 A/Mexico/InDRE2194/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315848 A/swine/South Dakota/7/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315587 A/Boston/691/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315563 A/Boston/685/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI314791 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI314328 A/swine/Tainan/46-4/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313096 A/swine/Hong Kong/5683/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313088 A/swine/Hong Kong/5609/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313080 A/swine/Hong Kong/2603/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313072 A/swine/Hong Kong/2592/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313064 A/swine/Hong Kong/2518/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313056 A/swine/Hong Kong/2507/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313048 A/swine/Hong Kong/2503/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313040 A/swine/Hong Kong/2461/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313032 A/swine/Hong Kong/2445/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313024 A/swine/Hong Kong/2428/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313016 A/swine/Hong Kong/2422/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI313008 A/swine/Hong Kong/2161/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312728 A/swine/Thailand/CU-ST3/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312681 A/swine/Minnesota/226128/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312628 A/swine/Hong Kong/386/2008 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312622 A/swine/Hong Kong/NS856/2007 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312620 A/swine/Hong Kong/1112/2007 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312616 A/swine/Hong Kong/713/2007 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312582 A/swine/Hong Kong/823/2006 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312578 A/swine/Hong Kong/NS378/2006 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312560 A/swine/Hong Kong/1447/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312558 A/swine/Hong Kong/1306/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312556 A/swine/Hong Kong/NS883/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312554 A/swine/Hong Kong/NS856/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312550 A/swine/Hong Kong/562/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312548 A/swine/Hong Kong/NS399/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312546 A/swine/Hong Kong/NS206/2005 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312538 A/swine/Hong Kong/145/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312502 A/swine/Hong Kong/1472/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312500 A/swine/Hong Kong/NS1000/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312498 A/swine/Hong Kong/1441/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312488 A/swine/Hong Kong/1152/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312486 A/swine/Hong Kong/NS788/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312484 A/swine/Hong Kong/NS777/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312482 A/swine/Hong Kong/NS776/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312480 A/swine/Hong Kong/1100/2004 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312478 A/swine/Hong Kong/1010/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312476 A/swine/Hong Kong/NS683/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312474 A/swine/Hong Kong/551/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312448 A/swine/Hong Kong/299/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312446 A/swine/Hong Kong/281/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312440 A/swine/Hong Kong/40/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312438 A/swine/Hong Kong/38/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312436 A/swine/Hong Kong/36/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312434 A/swine/Hong Kong/35/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312432 A/swine/Hong Kong/32/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312430 A/swine/Hong Kong/17/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312428 A/swine/Hong Kong/NS44/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312426 A/swine/Hong Kong/NS10/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312370 A/swine/Hong Kong/1598/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312368 A/swine/Hong Kong/1591/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312358 A/swine/Hong Kong/1373/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312356 A/swine/Hong Kong/1370/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312354 A/swine/Hong Kong/NS919/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312346 A/swine/Hong Kong/987/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312344 A/swine/Hong Kong/NS619/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312298 A/swine/Hong Kong/280/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312296 A/swine/Hong Kong/271/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312290 A/swine/Hong Kong/252/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312288 A/swine/Hong Kong/NS193/2003 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312262 A/swine/Hong Kong/1822/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312260 A/swine/Hong Kong/1821/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312254 A/swine/Hong Kong/1742/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312250 A/swine/Hong Kong/1728/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312248 A/swine/Hong Kong/1720/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312246 A/swine/Hong Kong/1708/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312244 A/swine/Hong Kong/1707/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312242 A/swine/Hong Kong/1706/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312240 A/swine/Hong Kong/NS1148/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312238 A/swine/Hong Kong/NS1147/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312236 A/swine/Hong Kong/NS1143/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312234 A/swine/Hong Kong/NS1139/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312228 A/swine/Hong Kong/1327/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312222 A/swine/Hong Kong/1068/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312220 A/swine/Hong Kong/1065/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312218 A/swine/Hong Kong/749/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312216 A/swine/Hong Kong/748/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312214 A/swine/Hong Kong/NS319/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312212 A/swine/Hong Kong/88/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312210 A/swine/Hong Kong/NS63/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312208 A/swine/Hong Kong/NS58/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312206 A/swine/Hong Kong/63/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312196 A/swine/Hong Kong/NS1683/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312194 A/swine/Hong Kong/NS1681/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312192 A/swine/Hong Kong/10082/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312188 A/swine/Hong Kong/10072/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312180 A/swine/Hong Kong/10021/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312178 A/swine/Hong Kong/9959/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312176 A/swine/Hong Kong/9869/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312174 A/swine/Hong Kong/9866/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312172 A/swine/Hong Kong/NS1454/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312170 A/swine/Hong Kong/NS1451/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312164 A/swine/Hong Kong/9684/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312162 A/swine/Hong Kong/9667/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312160 A/swine/Hong Kong/9665/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312158 A/swine/Hong Kong/9661/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312134 A/swine/Hong Kong/9314/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312132 A/swine/Hong Kong/9313/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312126 A/swine/Hong Kong/9177/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312124 A/swine/Hong Kong/9163/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312122 A/swine/Hong Kong/NS896/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312120 A/swine/Hong Kong/NS888/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312118 A/swine/Hong Kong/NS884/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312114 A/swine/Hong Kong/8754/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312112 A/swine/Hong Kong/8737/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312110 A/swine/Hong Kong/NS861/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312108 A/swine/Hong Kong/NS839/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312106 A/swine/Hong Kong/NS838/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312104 A/swine/Hong Kong/NS836/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312102 A/swine/Hong Kong/8715/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312100 A/swine/Hong Kong/8710/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312098 A/swine/Hong Kong/8687/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312096 A/swine/Hong Kong/NS778/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312094 A/swine/Hong Kong/8596/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312092 A/swine/Hong Kong/8418/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312090 A/swine/Hong Kong/8372/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312088 A/swine/Hong Kong/8282/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312086 A/swine/Hong Kong/8279/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312084 A/swine/Hong Kong/NS247/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312082 A/swine/Hong Kong/NS246/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312080 A/swine/Hong Kong/NS217/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312078 A/swine/Hong Kong/NS155/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312074 A/swine/Hong Kong/7613/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312072 A/swine/Hong Kong/7611/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312070 A/swine/Hong Kong/NS6/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312068 A/swine/Hong Kong/7429/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312066 A/swine/Hong Kong/7383/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312064 A/swine/Hong Kong/7380/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312062 A/swine/Hong Kong/7378/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312060 A/swine/Hong Kong/7217/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312058 A/swine/Hong Kong/7209/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312056 A/swine/Hong Kong/7195/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312054 A/swine/Hong Kong/7193/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312052 A/swine/Hong Kong/7192/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312050 A/swine/Hong Kong/7041/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312048 A/swine/Hong Kong/7017/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312046 A/swine/Hong Kong/6438/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312044 A/swine/Hong Kong/6421/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312042 A/swine/Hong Kong/6390/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312040 A/swine/Hong Kong/6328/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312038 A/swine/Hong Kong/6294/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312036 A/swine/Hong Kong/6292/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312034 A/swine/Hong Kong/6290/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312032 A/swine/Hong Kong/6233/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312030 A/swine/Hong Kong/5930/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312028 A/swine/Hong Kong/5746/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312026 A/swine/Hong Kong/5734/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312024 A/swine/Hong Kong/5628/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312022 A/swine/Hong Kong/5620/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312020 A/swine/Hong Kong/5608/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312018 A/swine/Hong Kong/5607/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312016 A/swine/Hong Kong/5601/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312014 A/swine/Hong Kong/5566/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312012 A/swine/Hong Kong/5517/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312010 A/swine/Hong Kong/5507/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312008 A/swine/Hong Kong/5505/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312006 A/swine/Hong Kong/5504/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312004 A/swine/Hong Kong/5359/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312002 A/swine/Hong Kong/5358/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI312000 A/swine/Hong Kong/5349/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311998 A/swine/Hong Kong/5347/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311996 A/swine/Hong Kong/5339/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311994 A/swine/Hong Kong/5337/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311992 A/swine/Hong Kong/5301/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311990 A/swine/Hong Kong/5300/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311988 A/swine/Hong Kong/5280/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311986 A/swine/Hong Kong/5279/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311984 A/swine/Hong Kong/5278/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311982 A/swine/Hong Kong/5276/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311980 A/swine/Hong Kong/5275/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311978 A/swine/Hong Kong/5273/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311976 A/swine/Hong Kong/5271/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311974 A/swine/Hong Kong/5270/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311972 A/swine/Hong Kong/5269/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311970 A/swine/Hong Kong/5235/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311968 A/swine/Hong Kong/5234/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311966 A/swine/Hong Kong/5233/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311964 A/swine/Hong Kong/5232/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311962 A/swine/Hong Kong/4979/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311960 A/swine/Hong Kong/4976/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311958 A/swine/Hong Kong/4968/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311956 A/swine/Hong Kong/4959/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311954 A/swine/Hong Kong/4952/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311952 A/swine/Hong Kong/4951/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311950 A/swine/Hong Kong/4936/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311948 A/swine/Hong Kong/4934/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311946 A/swine/Hong Kong/4928/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311944 A/swine/Hong Kong/4920/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311942 A/swine/Hong Kong/4893/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311940 A/swine/Hong Kong/4865/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311938 A/swine/Hong Kong/4617/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311936 A/swine/Hong Kong/4463/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311926 A/swine/Hong Kong/4260/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311924 A/swine/Hong Kong/4258/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311922 A/swine/Hong Kong/4254/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311920 A/swine/Hong Kong/4251/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311918 A/swine/Hong Kong/4247/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311916 A/swine/Hong Kong/4240/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311914 A/swine/Hong Kong/4237/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311912 A/swine/Hong Kong/4236/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311910 A/swine/Hong Kong/4234/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311908 A/swine/Hong Kong/4233/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311906 A/swine/Hong Kong/4232/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311904 A/swine/Hong Kong/4229/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311902 A/swine/Hong Kong/4228/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311900 A/swine/Hong Kong/4227/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311898 A/swine/Hong Kong/4217/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311896 A/swine/Hong Kong/4211/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311894 A/swine/Hong Kong/4202/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311892 A/swine/Hong Kong/4201/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311890 A/swine/Hong Kong/4199/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311888 A/swine/Hong Kong/4198/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311886 A/swine/Hong Kong/4194/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311884 A/swine/Hong Kong/4190/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311882 A/swine/Hong Kong/4189/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311880 A/swine/Hong Kong/4182/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311878 A/swine/Hong Kong/4179/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311876 A/swine/Hong Kong/4178/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311874 A/swine/Hong Kong/4175/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311872 A/swine/Hong Kong/4171/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311870 A/swine/Hong Kong/4170/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311868 A/swine/Hong Kong/4167/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311866 A/swine/Hong Kong/4164/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311864 A/swine/Hong Kong/4162/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311862 A/swine/Hong Kong/4160/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311860 A/swine/Hong Kong/4158/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311858 A/swine/Hong Kong/4154/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311856 A/swine/Hong Kong/4148/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311854 A/swine/Hong Kong/4146/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311852 A/swine/Hong Kong/4142/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311850 A/swine/Hong Kong/4140/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311848 A/swine/Hong Kong/4136/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311846 A/swine/Hong Kong/4134/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311844 A/swine/Hong Kong/4133/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311842 A/swine/Hong Kong/4131/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311840 A/swine/Hong Kong/4129/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311838 A/swine/Hong Kong/4128/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311836 A/swine/Hong Kong/4127/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311834 A/swine/Hong Kong/4124/1999 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311832 A/swine/Hong Kong/4123/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311830 A/swine/Hong Kong/4122/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311828 A/swine/Hong Kong/4113/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311826 A/swine/Hong Kong/4110/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311824 A/swine/Hong Kong/4101/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311822 A/swine/Hong Kong/4089/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311820 A/swine/Hong Kong/4088/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311816 A/swine/Hong Kong/4079/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311814 A/swine/Hong Kong/4072/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311812 A/swine/Hong Kong/4070/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311810 A/swine/Hong Kong/4069/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311806 A/swine/Hong Kong/4026/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311804 A/swine/Hong Kong/4010/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311802 A/swine/Hong Kong/3998/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311798 A/swine/Hong Kong/3954/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311796 A/swine/Hong Kong/3847/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311794 A/swine/Hong Kong/3788/1999 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311790 A/swine/Hong Kong/3070/1998 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311788 A/swine/Hong Kong/2928/1998 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311780 A/swine/Hong Kong/2606/1998 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311767 A/swine/Hong Kong/NS252/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311503 A/swine/Hong Kong/729/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311431 A/swine/Hong Kong/1111/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311391 A/swine/Hong Kong/NS30/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311375 A/swine/Hong Kong/1578/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311343 A/swine/Hong Kong/NS605/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311311 A/swine/Hong Kong/1733/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311287 A/swine/Hong Kong/NS728/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311271 A/swine/Hong Kong/752/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311263 A/swine/Hong Kong/227/2002 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311255 A/swine/Hong Kong/NS13/2002 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311247 A/swine/Hong Kong/NS1680/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311239 A/swine/Hong Kong/10022/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311231 A/swine/Hong Kong/NS1586/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311215 A/swine/Hong Kong/9420/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311207 A/swine/Hong Kong/9303/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311191 A/swine/Hong Kong/8944/2001 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311183 A/swine/Hong Kong/NS885/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311175 A/swine/Hong Kong/8709/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311167 A/swine/Hong Kong/8690/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311159 A/swine/Hong Kong/8631/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311151 A/swine/Hong Kong/8376/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311143 A/swine/Hong Kong/8278/2001 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311135 A/swine/Hong Kong/7945/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311127 A/swine/Hong Kong/NS241/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311119 A/swine/Hong Kong/NS143/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311111 A/swine/Hong Kong/7635/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311103 A/swine/Hong Kong/NS9/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311095 A/swine/Hong Kong/7287/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311087 A/swine/Hong Kong/7191/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311079 A/swine/Hong Kong/6301/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311071 A/swine/Hong Kong/6250/2000 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311069 A/swine/Hong Kong/1937/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311061 A/swine/Hong Kong/1845/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311053 A/swine/Hong Kong/1795/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311045 A/swine/Hong Kong/1767/1994 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311037 A/swine/Hong Kong/1374/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311029 A/swine/Hong Kong/1290/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311021 A/swine/Hong Kong/1286/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311013 A/swine/Hong Kong/835/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI311005 A/swine/Hong Kong/1223/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310997 A/swine/Hong Kong/1219/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310989 A/swine/Hong Kong/829/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310981 A/swine/Hong Kong/813/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310965 A/swine/Hong Kong/172/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310949 A/swine/Hong Kong/574/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310941 A/swine/Hong Kong/347/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310933 A/swine/Hong Kong/299/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310925 A/swine/Hong Kong/249/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310917 A/swine/Hong Kong/158/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310909 A/swine/Hong Kong/128/1993 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310901 A/swine/Hong Kong/99/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310893 A/swine/Hong Kong/97/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310885 A/swine/Hong Kong/96/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310877 A/swine/Hong Kong/95/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310869 A/swine/Hong Kong/94/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310861 A/swine/Hong Kong/92/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310853 A/swine/Hong Kong/91/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310845 A/swine/Hong Kong/90/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310837 A/swine/Hong Kong/89/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310829 A/swine/Hong Kong/101/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310821 A/swine/Hong Kong/100/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310813 A/swine/Hong Kong/86/1979 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310805 A/swine/Hong Kong/84/1978 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310797 A/swine/Hong Kong/83/1978 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310789 A/swine/Hong Kong/80/1978 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310781 A/swine/Hong Kong/79/1978 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310773 A/swine/Hong Kong/78/1978 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310765 A/swine/Hong Kong/76/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310757 A/swine/Hong Kong/70/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310749 A/swine/Hong Kong/68/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310741 A/swine/Hong Kong/67/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310733 A/swine/Hong Kong/66/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310725 A/swine/Hong Kong/73/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310717 A/swine/Hong Kong/65/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310709 A/swine/Hong Kong/64/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310701 A/swine/Hong Kong/63/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310693 A/swine/Hong Kong/62/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310685 A/swine/Hong Kong/59/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310677 A/swine/Hong Kong/58/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310669 A/swine/Hong Kong/57/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310661 A/swine/Hong Kong/55/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310653 A/swine/Hong Kong/54/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310645 A/swine/Hong Kong/53/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310637 A/swine/Hong Kong/52/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310629 A/swine/Hong Kong/50/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310621 A/swine/Hong Kong/49/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310613 A/swine/Hong Kong/48/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310605 A/swine/Hong Kong/47/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310597 A/swine/Hong Kong/46/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310589 A/swine/Hong Kong/45/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310581 A/swine/Hong Kong/44/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310573 A/swine/Hong Kong/43/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310565 A/swine/Hong Kong/42/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310557 A/swine/Hong Kong/41/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310549 A/swine/Hong Kong/40/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310541 A/swine/Hong Kong/39/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310533 A/swine/Hong Kong/38/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310525 A/swine/Hong Kong/37/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310517 A/swine/Hong Kong/36/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310509 A/swine/Hong Kong/34/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310501 A/swine/Hong Kong/33/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310493 A/swine/Hong Kong/32/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310485 A/swine/Hong Kong/31/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310477 A/swine/Hong Kong/30/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310469 A/swine/Hong Kong/29/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310461 A/swine/Hong Kong/28/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310453 A/swine/Hong Kong/27/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310445 A/swine/Hong Kong/26/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310437 A/swine/Hong Kong/25/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310429 A/swine/Hong Kong/61/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310421 A/swine/Hong Kong/51/1977 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310249 A/HuZhou/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310005 A/Michigan/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI307942 A/swine/Iowa/A01057153/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI305352 A/KOBE/435/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI302420 A/VICTORIA/502/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI301802 A/Madrid/RR6872/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297192 A/Sendai/TU618/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297188 A/Sendai/TU613/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297174 A/Sendai/TU533/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297136 A/Sendai/TU446/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297133 A/Sendai/TU447/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI297131 A/Sendai/TU441/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI296127 A/swine/Shandong/LY/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI296119 A/swine/Shandong/RS/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI295487 A/California/21/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI295423 A/Bolivia/1516/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI295420 A/Peru/5610/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI295380 A/CHIBA/12/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI294109 A/SOUTH AUSTRALIA/81/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI291799 A/Iowa/02/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI291788 A/Illinois/09/2007 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI291748 A/Myanmar/JP-A017/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI291704 A/Oklahoma/11/1990 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI289659 A/swine/Missouri/46519-5/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI289647 A/swine/Iowa/46519-1/2007 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI288354 A/Boston/628/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI288338 A/Boston/704/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI288298 A/Boston/681/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI288282 A/Boston/666/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI288226 A/Boston/612/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287477 A/swine/Guangdong/1222/2006 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287473 A/swine/Guangdong/628/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287472 A/swine/Guangdong/611/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287471 A/swine/Guangdong/446/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287470 A/swine/Guangdong/322/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287469 A/swine/Guangdong/109/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI287468 A/swine/Guangdong/33/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI284312 A/Myanmar/M535/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI283320 A/swine/Saitama/20/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI283319 A/swine/Saitama/1/2004 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI283318 A/swine/Saitama/27/2003 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI283317 A/swine/Saitama/1/2005 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI281271 A/swine/Ohio/02026/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI281267 A/swine/Missouri/02060/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI281266 A/swine/North Carolina/02023/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI279895 A/Hong Kong/2212/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI278888 A/El Salvador/455/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276823 A/Japan/AF2287/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276817 A/Japan/AF2281/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276812 A/Japan/AF2276/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276811 A/Japan/AF2275/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276810 A/Japan/AF2274/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276809 A/Japan/AF2273/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276806 A/Japan/AF2270/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276575 A/ENG/1057/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276196 A/California/AF2121/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI276163 A/Alaska/AF2087/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI275113 A/Munich/INS365/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI273941 A/swine/Okinawa/2/2005 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI273754 A/Tennessee/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI273013 A/swine/Thailand/CU-CB1/2006 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI272917 A/Lisboa/58/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI272911 A/Lisboa/51/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI272633 A/YAMAGATA/107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI272363 A/swine/SD/1/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI271861 A/swine/Chiba/1/1991 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI269873 A/Darwin/2144/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI269543 A/swine/Minnesota/03025/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI269540 A/swine/Minnesota/03022/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI269531 A/X-53 (Puerto Rico/8/1934-New Jersey/11/1976) (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI267760 A/New York/6530/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265940 A/swine/Guangdong/09/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265939 A/swine/Guangdong/07/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265938 A/swine/Guangdong/06/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265937 A/swine/Guangdong/05/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265936 A/swine/Guangdong/09/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265935 A/swine/Guangdong/07/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI265934 A/swine/Guangdong/02/2008 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI259433 A/swine/Iowa/02999/2010 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI257596 A/Hebei-Qiaodong/SWL1592/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI257074 A/HIROSHIMA-C/309/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI256003 A/Macedonia/3369/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI256001 A/Macedonia/3302/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255951 A/Slovenia/5155/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255903 A/Georgia/4802/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255736 A/swine/Hong Kong/NS1892/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255728 A/swine/Hong Kong/NS1890/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255720 A/swine/Hong Kong/NS1889/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255640 A/swine/Hong Kong/2314/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255600 A/swine/Hong Kong/1479/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255592 A/swine/Hong Kong/1435/2009 (A/H1N2) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255572 A/swine/Guangdong/11/2009 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255209 A/Afghanistan/N10790/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255208 A/Afghanistan/N10788/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255206 A/Afghanistan/N10782/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255205 A/Afghanistan/N10771/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255201 A/Afghanistan/N10757/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255200 A/Afghanistan/N10749/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI255199 A/Afghanistan/N10736/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)

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K166T

EPI320095 A/New Mexico/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320093 A/New Mexico/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320085 A/New Mexico/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI320077 A/New Mexico/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316824 A/Mexico/InDRE2425/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316822 A/Mexico/InDRE2424/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI316820 A/Mexico/InDRE2419/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315906 A/Mexico/InDRE2214/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI315893 A/Mexico/InDRE2194/2011 (A/H1N1) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)
EPI310249 A/HuZhou/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512541e+00 14/14 (100%)

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Full HA sequences for A/Mexico/InDRE2425/2011, A/Mexico/InDRE2424/2011, A/Mexico/InDRE2419/2011, A/Mexico/InDRE2194/2011 have been released at Genbank. confirming the close relationship to the above New Mexico sequences.

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Three of HA sequences are identical to A/New Mexico/04/2011.

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LOCUS CY089854 1718 bp cRNA linear VRL 09-JUL-2011
DEFINITION Influenza A virus (A/Mexico/InDRE2424/2011(H1N1)) hemagglutinin
(HA) gene, complete cds.
ACCESSION CY089854
VERSION CY089854.2 GI:339730804
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE2424/2011(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE2424/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1718)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P., Rodriguez-Maldonado,A.,
Wong-Arambula,C., Del-Mazo,J.C., Rodriguez-Castillo,A.,
Olivera-Diaz,H., Barrera-Badillo,G., Lopez-Martinez,I.,
Guzman-Bracho,C. and Alpuche-Aranda,C.
TITLE Detection of D222N Substitution in the Pandemic Influenza (H1N1)
Virus in Chihuahua, Mexico 2011
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1718)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P., Rodriguez-Maldonado,A.,
Wong-Arambula,C., Del-Mazo,J.C., Rodriguez-Castillo,A.,
Olivera-Diaz,H., Barrera-Badillo,G., Lopez-Martinez,I.,
Guzman-Bracho,C. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (09-JUL-2011) Laboratorio de Genoma de Patogenos,
Instituo de Diagnostico y Referencia Epidemiologicos, Carpio 470,
Colonia Santo Tomas, Mexico., Distrito Federal 11340, Mexico
COMMENT On Jul 9, 2011 this sequence version replaced gi:330846997.
FEATURES Location/Qualifiers
source 1..1718
/organism="Influenza A virus
(A/Mexico/InDRE2424/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE2424/2011"
/serotype="H1N1"
/isolation_source="Pharyngeal swab"
/host="human; gender M; age 40"
/db_xref="taxon:1017219"
/segment="4"
/country="Mexico: Chihuahua"
/collection_date="04-Apr-2011"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="AEC46555.2"
/db_xref="GI:339730805"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDPNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSTSYINDKGKKVLVLWGIHHPSTSADQQSLYQNADAYAFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NEGSGIIISDTSVHDCNTTCQTPKGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAFDKI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..1698
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca tagctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagggag
361 caattgagct cagtgtcatc atttgaaaga tttgagatat tccccaagac aagttcatgg
421 cccaatcatg acccgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaca
541 tcctatatta atgataaagg gaaaaaagta ctcgtgctat ggggcattca ccatccatct
601 actagtgctg accaacaaag tctctatcag aatgcagatg catatgcttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt gccgagatat gcattcgcaa tggaaagaaa tgagggatct
841 ggtattatca tttcagatac atcagtccac gattgcaata caacttgtca aacacccaag
901 ggtgctataa acaccagcct cccatttcag aatgtacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatctc gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttaccatcat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgcctttgac aagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagtta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtattta acattaggat ttcagaag

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