Rhiza Labs FluTracker Forum

A/Singapore/GP730/2011 HA has S87I, D100N, H141Q, R208K, I219V, V252L, E359A, E377K.

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R262K

EPI319199 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI316277 A/KOBE/537/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI310139 A/Vietnam/21/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI308269 A/San Diego/WRAIR1649P/2009 (A/H1N1) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI307152 A/Kenya/065/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI301423 A/Lyon/CHU/43.28/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI295504 A/Nigeria/1506/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI292240 A/Finland/668/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI278835 A/California/12/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI278576 A/Madagascar/0001/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI277825 A/Ft Carson/WR1449P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI277697 A/California/WR1315P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI277689 A/California/WR1314P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI262439 A/Kenya/0018/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI258630 A/District of Columbia/INS114/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI255901 A/Georgia/4573/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI255837 A/Barcelona/1952/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI249710 A/Texas/JMS376/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI246668 A/New York/5931/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI243908 A/Vermont/29/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI224437 A/Catalonia/S1947/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI216778 A/Costa Rica/6321/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI211577 A/California/33/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI180207 A/swine/North Carolina/29698/2003 (A/H1) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI179110 A/Mexico/4635/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI14844 A/SW/MN/22860-S/01 (A/H1N2) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI14842 A/SW/MN/22860-T/01 (A/H1N2) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)
EPI14840 A/SW/NE/21147/01 (A/H1N2) segment 4 (HA) 27.0 6.497123e+00 14/14 (100%)

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Update
CY091724.1 Influenza A virus (A/Singapore/TT89/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091704.1 Influenza A virus (A/Singapore/KK117/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
CY091700.1 Influenza A virus (A/Singapore/GP730/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091696.1 Influenza A virus (A/Singapore/GP582/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091690.1 Influenza A virus (A/Singapore/GP46/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091684.1 Influenza A virus (A/Singapore/EN34/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091680.1 Influenza A virus (A/Singapore/KK734/2010(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091672.1 Influenza A virus (A/Singapore/GP4588/2010(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
CY091670.1 Influenza A virus (A/Singapore/GP4565/2010(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 227 100%
JN017180.1 Influenza A virus (A/Palermo/04/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017177.1 Influenza A virus (A/Pavia/189/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017176.1 Influenza A virus (A/Pavia/156/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017173.1 Influenza A virus (A/Pavia/132/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017172.1 Influenza A virus (A/Pavia/130/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017171.1 Influenza A virus (A/Pavia/129/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017170.1 Influenza A virus (A/Pavia/127/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017166.1 Influenza A virus (A/Pavia/105/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017165.1 Influenza A virus (A/Pavia/98/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017164.1 Influenza A virus (A/Pavia/83/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017162.1 Influenza A virus (A/Pavia/74/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017161.1 Influenza A virus (A/Pavia/73/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017160.1 Influenza A virus (A/Pavia/71/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017159.1 Influenza A virus (A/Pavia/65/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017158.1 Influenza A virus (A/Pavia/63/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017155.1 Influenza A virus (A/Pavia/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017152.1 Influenza A virus (A/Pavia/30/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017146.1 Influenza A virus (A/Pavia/195/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017142.1 Influenza A virus (A/Pavia/157/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017141.1 Influenza A virus (A/Pavia/149/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017140.1 Influenza A virus (A/Pavia/126/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017138.1 Influenza A virus (A/Pavia/116/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017136.1 Influenza A virus (A/Pavia/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017134.1 Influenza A virus (A/Pavia/70/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017133.1 Influenza A virus (A/Pavia/69/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017129.1 Influenza A virus (A/Pavia/31/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017128.1 Influenza A virus (A/Pavia/29/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017123.1 Influenza A virus (A/Pavia/174/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017122.1 Influenza A virus (A/Pavia/161/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017117.1 Influenza A virus (A/Pavia/114/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017115.1 Influenza A virus (A/Pavia/87/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017114.1 Influenza A virus (A/Pavia/86/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017113.1 Influenza A virus (A/Pavia/81/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017111.1 Influenza A virus (A/Pavia/68/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JN017107.1 Influenza A virus (A/Pavia/42/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801906.1 Influenza A virus (A/Milan/24/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801905.1 Influenza A virus (A/Milan/237/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801904.1 Influenza A virus (A/Milan/236/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801903.1 Influenza A virus (A/Milan/235/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801901.1 Influenza A virus (A/Milan/230/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801898.1 Influenza A virus (A/Milan/213/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801895.1 Influenza A virus (A/Milan/188/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801890.1 Influenza A virus (A/Milan/194/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801874.1 Influenza A virus (A/Milan/90/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801869.1 Influenza A virus (A/Milan/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801868.1 Influenza A virus (A/Milan/84/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801867.1 Influenza A virus (A/Milan/80/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801866.1 Influenza A virus (A/Milan/72/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801865.1 Influenza A virus (A/Milan/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801864.1 Influenza A virus (A/Milan/40/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%
JF801863.1 Influenza A virus (A/Milan/35/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 227 100%

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H141Q at Genbank

CY091724.1 Influenza A virus (A/Singapore/TT89/2011(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091700.1 Influenza A virus (A/Singapore/GP730/2011(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091696.1 Influenza A virus (A/Singapore/GP582/2011(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091690.1 Influenza A virus (A/Singapore/GP46/2011(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091684.1 Influenza A virus (A/Singapore/EN34/2011(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091680.1 Influenza A virus (A/Singapore/KK734/2010(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091672.1 Influenza A virus (A/Singapore/GP4588/2010(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
CY091670.1 Influenza A virus (A/Singapore/GP4565/2010(H1N1)) hemagglutinin (HA) gene, complete cds 40.1 40.1 100% 0.060 100%
JN017180.1 Influenza A virus (A/Palermo/04/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017177.1 Influenza A virus (A/Pavia/189/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017176.1 Influenza A virus (A/Pavia/156/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017173.1 Influenza A virus (A/Pavia/132/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017172.1 Influenza A virus (A/Pavia/130/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017171.1 Influenza A virus (A/Pavia/129/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017170.1 Influenza A virus (A/Pavia/127/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017166.1 Influenza A virus (A/Pavia/105/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017165.1 Influenza A virus (A/Pavia/98/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017164.1 Influenza A virus (A/Pavia/83/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017162.1 Influenza A virus (A/Pavia/74/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017161.1 Influenza A virus (A/Pavia/73/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017160.1 Influenza A virus (A/Pavia/71/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017159.1 Influenza A virus (A/Pavia/65/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017158.1 Influenza A virus (A/Pavia/63/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017155.1 Influenza A virus (A/Pavia/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017152.1 Influenza A virus (A/Pavia/30/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017146.1 Influenza A virus (A/Pavia/195/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017142.1 Influenza A virus (A/Pavia/157/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017141.1 Influenza A virus (A/Pavia/149/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017140.1 Influenza A virus (A/Pavia/126/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017138.1 Influenza A virus (A/Pavia/116/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017136.1 Influenza A virus (A/Pavia/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017134.1 Influenza A virus (A/Pavia/70/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017133.1 Influenza A virus (A/Pavia/69/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017129.1 Influenza A virus (A/Pavia/31/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017128.1 Influenza A virus (A/Pavia/29/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017123.1 Influenza A virus (A/Pavia/174/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017122.1 Influenza A virus (A/Pavia/161/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017117.1 Influenza A virus (A/Pavia/114/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017115.1 Influenza A virus (A/Pavia/87/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017114.1 Influenza A virus (A/Pavia/86/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017113.1 Influenza A virus (A/Pavia/81/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017111.1 Influenza A virus (A/Pavia/68/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JN017107.1 Influenza A virus (A/Pavia/42/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
CY090793.1 Influenza A virus (A/Bucuresti/52010/2011(H1N1)) hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801908.1 Influenza A virus (A/Milan/124/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801906.1 Influenza A virus (A/Milan/24/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801905.1 Influenza A virus (A/Milan/237/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801904.1 Influenza A virus (A/Milan/236/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801903.1 Influenza A virus (A/Milan/235/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801901.1 Influenza A virus (A/Milan/230/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801898.1 Influenza A virus (A/Milan/213/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801895.1 Influenza A virus (A/Milan/188/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801894.1 Influenza A virus (A/Milan/181/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801890.1 Influenza A virus (A/Milan/194/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801889.1 Influenza A virus (A/Milan/166/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801886.1 Influenza A virus (A/Milan/220/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801885.1 Influenza A virus (A/Milan/99/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801884.1 Influenza A virus (A/Milan/98/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801883.1 Influenza A virus (A/Milan/206/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801880.1 Influenza A virus (A/Milan/184/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801877.1 Influenza A virus (A/Milan/162/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801874.1 Influenza A virus (A/Milan/90/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801873.1 Influenza A virus (A/Milan/75/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801872.1 Influenza A virus (A/Milan/122/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801869.1 Influenza A virus (A/Milan/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801868.1 Influenza A virus (A/Milan/84/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801867.1 Influenza A virus (A/Milan/80/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801866.1 Influenza A virus (A/Milan/72/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801865.1 Influenza A virus (A/Milan/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801864.1 Influenza A virus (A/Milan/40/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%
JF801863.1 Influenza A virus (A/Milan/35/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 40.1 40.1 100% 0.060 100%

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H141Q update at GISAID

EPI319469 A/H1N1Genoa/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319199 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319182 A/Darwin/74/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319178 A/Perth/30/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319176 A/Perth/29/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319174 A/Darwin/70/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319172 A/Darwin/10/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319170 A/Darwin/74/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319168 A/Darwin/2/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319166 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI318260 A/Linkoping/7/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI317528 A/Bucuresti/52010/2011 (A/H1N1) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316849 A/Milan/124/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316848 A/Milan/237/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316847 A/Milan/236/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316846 A/Milan/235/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316844 A/Milan/230/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316841 A/Milan/213/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316835 A/Milan/194/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316833 A/Milan/206/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316807 A/Milan/24/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316806 A/Milan/188/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316805 A/Milan/181/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316804 A/Milan/166/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316802 A/Milan/220/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316801 A/Milan/99/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316800 A/Milan/98/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316799 A/Milan/197/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316797 A/Milan/184/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316794 A/Milan/162/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316791 A/Milan/90/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316790 A/Milan/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316789 A/Milan/122/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316787 A/Milan/88/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316786 A/Milan/84/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316785 A/Milan/80/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316784 A/Milan/72/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316783 A/Milan/55/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316782 A/Milan/40/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316781 A/Milan/35/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI302351 A/DARWIN/2/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI279609 A/IWATE/1031/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI278675 A/SAITAMA/84/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI252826 A/Texas/JMS373/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)

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GISAID has released 7 of the 8 gene segments for Darwin/2/11 as well as cloned and original sequneces for several of the Australian isolates with S246N.

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update
EPI319199 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319166 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316277 A/KOBE/537/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI310139 A/Vietnam/21/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI308269 A/San Diego/WRAIR1649P/2009 (A/H1N1) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI307152 A/Kenya/065/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI301423 A/Lyon/CHU/43.28/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI295504 A/Nigeria/1506/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI292240 A/Finland/668/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI278835 A/California/12/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI278576 A/Madagascar/0001/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI277825 A/Ft Carson/WR1449P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI277697 A/California/WR1315P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI277689 A/California/WR1314P/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI262439 A/Kenya/0018/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI258630 A/District of Columbia/INS114/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI255901 A/Georgia/4573/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI255837 A/Barcelona/1952/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI249710 A/Texas/JMS376/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI246668 A/New York/5931/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI243908 A/Vermont/29/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI224437 A/Catalonia/S1947/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI216778 A/Costa Rica/6321/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI211577 A/California/33/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI180207 A/swine/North Carolina/29698/2003 (A/H1) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI179110 A/Mexico/4635/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI14844 A/SW/MN/22860-S/01 (A/H1N2) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI14842 A/SW/MN/22860-T/01 (A/H1N2) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI14840 A/SW/NE/21147/01 (A/H1N2) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)

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T1467C
EPI319199 A/Darwin/75/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319182 A/Darwin/74/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319178 A/Perth/30/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319176 A/Perth/29/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319174 A/Darwin/70/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319172 A/Darwin/10/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319170 A/Darwin/74/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI319168 A/Darwin/2/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI316994 A/swine/Nebraska/A0109048/2010 (A/H1N1) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI309812 A/Bangladesh/5513/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI302351 A/DARWIN/2/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI292209 A/Finland/631/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI273832 A/Wyoming/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI273735 A/Kansas/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI273671 A/Nevada/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI273650 A/California/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI272391 A/AOMORI/3/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI267632 A/Shandong-Wenshan/SWL42/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI266065 A/Perm/CRIE-ZTS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI266007 A/Tver/CRIE-ZC/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI259193 A/swine/NC/13598/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI255799 A/Thailand/PMKD0028/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI249710 A/Texas/JMS376/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI246045 A/Darkhan-uul/10273/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI244983 A/Australia/40/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI243899 A/Delaware/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI232985 A/IWATE/1080/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI230215 A/ENG/92820956/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI216851 A/Guatemala/3798/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI216842 A/Florida/21/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI215939 A/Lviv/N2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
EPI189074 A/Argentina/7649/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.498213e+00 14/14 (100%)
CY091724.1 Influenza A virus (A/Singapore/TT89/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091710.1 Influenza A virus (A/Singapore/SGH01/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY091704.1 Influenza A virus (A/Singapore/KK117/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY091700.1 Influenza A virus (A/Singapore/GP730/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091696.1 Influenza A virus (A/Singapore/GP582/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091690.1 Influenza A virus (A/Singapore/GP46/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091684.1 Influenza A virus (A/Singapore/EN34/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091680.1 Influenza A virus (A/Singapore/KK734/2010(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091672.1 Influenza A virus (A/Singapore/GP4588/2010(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY091670.1 Influenza A virus (A/Singapore/GP4565/2010(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
JF812280.1 Influenza A virus (A/swine/Nebraska/A01049048/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
HQ228080.1 Influenza A virus (A/Finland/631/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY064922.1 Influenza A virus (A/Shandong-Wenshan/SWL42/2010(H1N1)) segment 4 sequence 34.2 34.2 100% 3.7 100%
HM189390.1 Influenza A virus (A/Perm/CRIE-ZTS/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
HM189368.1 Influenza A virus (A/Tver/CRIE-ZC/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
HM219621.1 Influenza A virus (A/swine/NC/13598/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY054598.1 Influenza A virus (A/Thailand/PMKD0028/2009(H1N1)) segment 4 sequence 34.2 34.2 100% 3.7 100%
CY058724.1 Influenza A virus (A/Texas/JMS376/2009(H1N1)) segment 4, complete sequence 34.2 34.2 100% 3.7 100%
CY055724.1 Influenza A virus (A/Australia/40/2009(H1N1)) segment 4, complete sequence 34.2 34.2 100% 3.7 100%

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Over the last month, there have been various news reports about bad flu in Queensland in northern Australia.

From memory, the rate is much higher than last year (some reports 4 times, some 50% higher) and some mentioned it was more severe.

Interesting that there appears to be matching news stories (which don't mention any mutation/changes) and now released sequences.

In addition, from memory, there have been Oz sequences which had some of the UK nasties. And vax rates among children are up to 80% lower due to fears generated over previous dodgy batches and side effects.

A lot of nasty planets are lining for Australia this winter. I wonder whether it will come earlier like 2009 or later July/August/September like 2008 and 2007?

I commented on the Australian thread

viewtopic.php?f=7&t=54&start=200

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