Rhiza Labs FluTracker Forum

The recently released raipd communication, "Increased detection in Australia and Singapore of a novel influenza A(H1N1)2009 variant with reduced oseltamivir and zanamivir sensitivity due to a S247N neuraminidase mutation" descibes the spread of S246N in Singapore and Australia via clonal expansion. However, the associated phylogenetic tree demonstrates spread of S246N via recombination as well, leading to this chnage being appended onto multiple branches, incluidng those with S188T.

However, the clonally expanding branch has the HA change, E359A (labeled E373A in the figure) which is a relatively new acquisition (all isolates in the figure are from 2011 or late 2010). Recently released 2011 sequences from Italy have E359A (but NA sequences have not been released), raising concerns that NA S246N is spreading in Europe also.

http://www.eurosurveillance.org/ViewArt ... leId=19884

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E359A at GISAID

EPI319469 A/Genoa/05/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI318260 A/Linkoping/7/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316848 A/Milan/237/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316847 A/Milan/236/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316846 A/Milan/235/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316844 A/Milan/230/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316841 A/Milan/213/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316835 A/Milan/194/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316807 A/Milan/24/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316806 A/Milan/188/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316791 A/Milan/90/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316787 A/Milan/88/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316786 A/Milan/84/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316785 A/Milan/80/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316784 A/Milan/72/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316783 A/Milan/55/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316782 A/Milan/40/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)
EPI316781 A/Milan/35/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.497031e+00 14/14 (100%)

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E359A at Genbank

JN017180.1 Influenza A virus (A/Palermo/04/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017177.1 Influenza A virus (A/Pavia/189/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017176.1 Influenza A virus (A/Pavia/156/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017173.1 Influenza A virus (A/Pavia/132/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017172.1 Influenza A virus (A/Pavia/130/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017171.1 Influenza A virus (A/Pavia/129/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017170.1 Influenza A virus (A/Pavia/127/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017166.1 Influenza A virus (A/Pavia/105/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017165.1 Influenza A virus (A/Pavia/98/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017164.1 Influenza A virus (A/Pavia/83/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017162.1 Influenza A virus (A/Pavia/74/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017161.1 Influenza A virus (A/Pavia/73/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017160.1 Influenza A virus (A/Pavia/71/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017159.1 Influenza A virus (A/Pavia/65/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017158.1 Influenza A virus (A/Pavia/63/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017155.1 Influenza A virus (A/Pavia/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017152.1 Influenza A virus (A/Pavia/30/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017146.1 Influenza A virus (A/Pavia/195/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017142.1 Influenza A virus (A/Pavia/157/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017141.1 Influenza A virus (A/Pavia/149/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017140.1 Influenza A virus (A/Pavia/126/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017138.1 Influenza A virus (A/Pavia/116/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017136.1 Influenza A virus (A/Pavia/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017134.1 Influenza A virus (A/Pavia/70/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017133.1 Influenza A virus (A/Pavia/69/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017129.1 Influenza A virus (A/Pavia/31/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017128.1 Influenza A virus (A/Pavia/29/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017123.1 Influenza A virus (A/Pavia/174/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017122.1 Influenza A virus (A/Pavia/161/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017117.1 Influenza A virus (A/Pavia/114/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017115.1 Influenza A virus (A/Pavia/87/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017114.1 Influenza A virus (A/Pavia/86/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017113.1 Influenza A virus (A/Pavia/81/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017111.1 Influenza A virus (A/Pavia/68/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JN017107.1 Influenza A virus (A/Pavia/42/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801906.1 Influenza A virus (A/Milan/24/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801905.1 Influenza A virus (A/Milan/237/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801904.1 Influenza A virus (A/Milan/236/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801903.1 Influenza A virus (A/Milan/235/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801901.1 Influenza A virus (A/Milan/230/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801898.1 Influenza A virus (A/Milan/213/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801895.1 Influenza A virus (A/Milan/188/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801890.1 Influenza A virus (A/Milan/194/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801874.1 Influenza A virus (A/Milan/90/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801869.1 Influenza A virus (A/Milan/88/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801868.1 Influenza A virus (A/Milan/84/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801867.1 Influenza A virus (A/Milan/80/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801866.1 Influenza A virus (A/Milan/72/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801865.1 Influenza A virus (A/Milan/55/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801864.1 Influenza A virus (A/Milan/40/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
JF801863.1 Influenza A virus (A/Milan/35/2011(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%

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Note that the clonally expanding sub-clade also has S298A (labeled NA-S299A in figure). The NA sequence from Genoa doesn't have S246N, but does have S298A.

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S298A at GISAID (no S298A at Genbank)

EPI319470 A/Genoa/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318261 A/Linkoping/7/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI304386 A/SRI LANKA/21/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI302350 A/DARWIN/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (10

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T708C

EPI319470 A/H1N1Genoa/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318261 A/Linkoping/7/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318234 A/chicken/Egypt/RIMD29-1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318233 A/chicken/Egypt/RIMD28-3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318232 A/chicken/Egypt/RIMD27-4/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318229 A/chicken/Egypt/RIMD26-1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318228 A/chicken/Egypt/RIMD25-1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318227 A/chicken/Egypt/RIMD22-3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318226 A/chicken/Egypt/RIMD21-1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318225 A/chicken/Egypt/RIMD17-3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318224 A/chicken/Egypt/RIMD13-1/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318223 A/chicken/Egypt/RIMD12-2/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318222 A/chicken/Egypt/RIMD11-4/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318221 A/chicken/Egypt/RIMD10-2/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318220 A/chicken/Egypt/RIMD9-2/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318219 A/chicken/Egypt/RIMD8-7/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318218 A/chicken/Egypt/RIMD6-1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318217 A/chicken/Egypt/RIMD5-3/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318216 A/chicken/Egypt/RIMD4-5/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318215 A/chicken/Egypt/RIMD2-1/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318124 A/peregrine falcon/Aomori/7/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318118 A/whooper swan/Hokkaido/13-21/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318116 A/whooper swan/Hokkaido/A13/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318114 A/whooper swan/Hokkaido/13-27/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318112 A/duck/Hokkaido/28/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318110 A/whistling swan/Fukushima/207/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318108 A/duck/Fukushima/16/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI317083 A/Cambodia/408008/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI316304 A/chicken/Netherlands/11004875/11 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314925 A/ostrich/Suzhou/097/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314817 A/mandarin duck/Korea/K10-515/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314816 A/mandarin duck/Korea/K10-485/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314815 A/mandarin duck/Korea/K10-483/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314814 A/mandarin duck/Korea/K10-480/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314777 A/Bangladesh/3233/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314754 A/duck/Hokkaido/2/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314752 A/whooper swan/Hokkaido/6/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314750 A/duck/Hokkaido/1/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314363 A/chicken/Egypt/CL6/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314343 A/duck/Egypt/D2br10/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314322 A/pigeon/Thailand/VSMU-7-NPT/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI314195 A/whooper swan/Hokkaido/3/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI313107 A/chicken/Nandurbar/7966/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI313106 A/chicken/Nandurbar/7972/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI310415 A/pelican/Zambia/13/2009 (A/H9N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI308988 A/peregrine falcon/Tochigi/15/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307962 A/duck/Fukushima/2/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307501 A/whooper swan/Hokkaido/4/2011 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307142 A/chicken/Egypt/09279S-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307141 A/chicken/Egypt/0883-NLQP/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307140 A/duck/Egypt/093L-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307139 A/duck/Egypt/0918-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307138 A/duck/Egypt/0923-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307137 A/duck/Egypt/0926-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307136 A/duck/Egypt/093-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307135 A/duck/Egypt/09315s-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307134 A/duck/Egypt/0971SM-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307133 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307132 A/duck/Egypt/0982-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307131 A/duck/Egypt/099-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307130 A/duck/Egypt/1011d/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307128 A/goose/Egypt/0929-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307127 A/turkey/Egypt/101474v/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307126 A/turkey/Egypt/0935-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307125 A/turkey/Egypt/091Q-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307123 A/chicken/Egypt/1063/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307122 A/chicken/Egypt/1055/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307121 A/chicken/Egypt/1042/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307120 A/chicken/Egypt/1035/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307119 A/chicken/Egypt/1034qd/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307118 A/chicken/Egypt/1034/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307117 A/chicken/Egypt/1031/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307116 A/chicken/Egypt/102d/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307115 A/chicken/Egypt/1029/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307114 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307113 A/chicken/Egypt/101604v/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307112 A/chicken/Egypt/10135ss/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307111 A/chicken/Egypt/10127s/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307110 A/chicken/Egypt/10116s/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307109 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307108 A/chicken/Egypt/0977-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307107 A/chicken/Egypt/096L-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307106 A/chicken/Egypt/0962S-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307105 A/chicken/Egypt/0956-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307104 A/chicken/Egypt/09534S-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307103 A/chicken/Egypt/092-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307102 A/chicken/Egypt/0918Q-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307101 A/chicken/Egypt/088-NLQP/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306405 A/duck/Egypt/09224F-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306404 A/duck/Egypt/09184SM-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306403 A/duck/Egypt/0897-NLQP/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306402 A/duck/Egypt/0877-NLQP/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306197 A/Finland/612/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI302496 A/chicken/Germany-NI/R874/2010 (A/H7N7) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI302350 A/DARWIN/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI300864 A/chicken/Cambodia/013LC2b/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI297553 A/chicken/Huadong/4/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI297545 A/Cambodia/408008/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296714 A/Hong Kong/6841/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296698 A/grebe/Tyva/2/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296218 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296216 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296215 A/wild duck/Korea/HDR02/2005 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296214 A/wild duck/Korea/CW09/2005 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI296208 A/wild duck/Korea/UP122/2007 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI295969 A/duck/Tripura/103597/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI295961 A/goose/Tripura/103596/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294667 A/chicken/Egypt/3982-78/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294660 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294653 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294639 A/chicken/Egypt/3982-50/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294632 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294618 A/duck/Egypt/3982-21/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294611 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294604 A/chicken/Egypt/3982-19/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294597 A/chicken/Egypt/3982-14/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294590 A/chicken/Egypt/3982-13/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294583 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294576 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294569 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294562 A/chicken/Egypt/3982-4/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294555 A/chicken/Egypt/3982-3/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294548 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294541 A/chicken/Egypt/2095-75/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294534 A/chicken/Egypt/2095-70/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294527 A/chicken/Egypt/2095-68/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294520 A/chicken/Egypt/2095-65/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294513 A/chicken/Egypt/2095-50/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294512 A/chicken/Egypt/2095-46/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294511 A/chicken/Egypt/2095-39/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294504 A/chicken/Egypt/1553-28/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294497 A/chicken/Egypt/1553-26/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294490 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294483 A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294476 A/chicken/Egypt/1553-6/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI294469 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293959 A/Chicken/Turkey-Edirne/09rs2843-5/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293951 A/Chicken/Turkey-Batman/09rs2842-92/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293943 A/Chicken/Turkey-Bitlis/09rs2841-93/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293935 A/Chicken/Turkey-Batman/09rs2841-71/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293927 A/Chicken/Turkey-Mus/09rs2841-51/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293919 A/Chicken/Turkey-Mus/09rs2841-50/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293911 A/Chicken/Turkey-Isparta/09rs2841-37/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293903 A/Pigeon/Turkey-Agri/09rs2841-8/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI293895 A/Pigeon/Turkey-Kars/09rs2841-7/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI291947 A/chicken/Assam/142007/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287694 A/chicken/West Bengal/239022/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287686 A/chicken/West Bengal/239020/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287633 A/chicken/West Bengal/148713/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287622 A/chicken/West Bengal/142121/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287617 A/chicken/West Bengal/193936/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287609 A/chicken/West Bengal/155505/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287565 A/chicken/West Bengal/81760/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287564 A/chicken/West Bengal/106181/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287563 A/chicken/West Bengal/100879/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287562 A/chicken/West Bengal/82613/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287561 A/chicken/West Bengal/162642/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287560 A/chicken/West Bengal/170564/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285621 A/duck/Phu Tho/07-48/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285619 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285617 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285616 A/duck/Can Tho/07-28/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285615 A/duck/Vinh Long/07-26/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285614 A/duck/Soc Trang/07-25/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI285562 A/chicken/Egypt/VSVRI/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI284003 A/Cambodia/S1211394/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283999 A/duck/Cambodia/D1KC/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283997 A/duck/Cambodia/D1KP/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283996 A/chicken/Cambodia/047LC3/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283987 A/chicken/Cambodia/LC3AL/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283979 A/chicken/Cambodia/LC1AL/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283968 A/chicken/Cambodia/047LC4/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283960 A/chicken/Cambodia/047LC3b/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283946 A/chicken/Cambodia/022LC1b/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283925 A/duck/Cambodia/D3KP/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283917 A/duck/Cambodia/D5KC167/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283910 A/duck/Cambodia/D4KC167/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283904 A/duck/Cambodia/D3KC167/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283896 A/duck/Cambodia/D2KC167/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283889 A/duck/Cambodia/D1KC167/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283881 A/duck/Cambodia/D3PV/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283873 A/duck/Cambodia/D1PV/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283868 A/Cambodia/P0322095/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283860 A/duck/Cambodia/D14AL/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283852 A/chicken/Cambodia/LC/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283845 A/duck/Cambodia/D2KC/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283838 A/duck/Cambodia/D2KP/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283833 A/Cambodia/Q0405047/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283827 A/Cambodia/Q0321176/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283760 A/goose/Eastern China/JS223/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283759 A/duck/Eastern China/JS017/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283758 A/chicken/Eastern China/XZ235/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283756 A/chicken/Eastern China/JX037/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283755 A/chicken/Eastern China/JX036/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283275 A/chicken/Bangladesh/1151-10/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283270 A/chicken/Bangladesh/1151-9/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283259 A/great crested grebe/Tyva/22/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280279 A/water/Hunan/7/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280271 A/water/Hunan/3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280263 A/environment/Xinjiang/6/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280255 A/water/Xinjiang/3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280247 A/environment/Guizhou/9/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280239 A/environment/Guizhou/7/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280231 A/environment/Guizhou/4/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280223 A/environment/Guizhou/2/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280215 A/duck feces/Hebei/5/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280207 A/water/Hebei/3/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280199 A/water/Hebei/2/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280191 A/water/Hebei/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280175 A/Hunan/2/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280167 A/Hunan/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280159 A/Beijing/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280151 A/Jiangsu/2/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280143 A/Jiangsu/1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280135 A/Fujian/1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280127 A/Xinjiang/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280119 A/Hubei/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280111 A/Shanghai/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280095 A/Hunan/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280087 A/Guangxi/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280080 A/Guizhou/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280073 A/Xinjiang/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280066 A/Shandong/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280059 A/Guangdong/1/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280045 A/Hunan/1/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280038 A/Anhui/1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280031 A/Anhui/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280024 A/Guangdong/2/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280017 A/Sichuan/3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI279948 A/Zhejiang/1/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276261 A/chicken/Egypt/9402-CLEVB213/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276115 A/pintail/Miyagi/1472/2008 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276111 A/pintail/Aomori/794/2008 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276080 A/wild duck/Liaoning/8/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276072 A/shrike/Tibet/13/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276064 A/pied megpie/Liaoning/7/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276056 A/great cormorant/Tibet/12/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276048 A/goose/Hubei/65/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276040 A/goose/Guangdong/72/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276032 A/duck/Yunnan/47/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276024 A/duck/Jiangxi/80/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276016 A/duck/Hunan/70/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI276000 A/duck/Hunan/29/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275992 A/duck/Hunan/11/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275984 A/duck/Hubei/49/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275976 A/duck/Guangdong/23/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275968 A/duck/Anhui/56/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275960 A/duck/Anhui/1/06 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275952 A/chicken/Xinjiang/78/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275944 A/chicken/Xinjiang/68/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275928 A/chicken/Xinjiang/54/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275896 A/chicken/Xinjiang/17/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275888 A/chicken/Xinjiang/16/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275880 A/chicken/Tibet/6/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275872 A/chicken/Sichuan/81/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275864 A/chicken/Shanxi/10/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275856 A/chicken/Shandong/A-5/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275848 A/chicken/Shandong/A-10/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275840 A/chicken/Shandong/A-1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275832 A/chicken/Ningxia/24/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275824 A/chicken/Liaoning/A-11/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275816 A/chicken/Liaoning/A-1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275808 A/chicken/Liaoning/23/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275800 A/chicken/Jiangxi/25/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275792 A/chicken/Jiangsu/18/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275784 A/chicken/Hunan/41/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275776 A/chicken/Hunan/21/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275768 A/chicken/Hunan/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275760 A/chicken/Henan/A-7/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275752 A/chicken/Hebei/A-8/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275744 A/chicken/Guizhou/7/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275728 A/chicken/Fujian/1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275712 A/bar-headed goose/Tibet/8/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275704 A/bar-headed goose/Qinghai/3/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275696 A/bar-headed goose/Qinghai/1-HVRI/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275672 A/Thailand/WRAIR1724H/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275664 A/Thailand/WRAIR1723H/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275656 A/Thailand/WRAIR1722H/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275648 A/Thailand/WRAIR1721H/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275640 A/Thailand/WRAIR1720H/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275464 A/Guangxi/1/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275388 A/Anhui/2/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI275380 A/Anhui/1/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271852 A/chicken/Egypt/C3Br10/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271764 A/swine/North Sumatra/UT6034/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271756 A/swine/South Kalimantan/UT6015/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271748 A/swine/East Java/UT6012/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271740 A/swine/East Java/UT6010/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271732 A/swine/Banten/UT6008/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271724 A/swine/East Java/UT6005/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271716 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271708 A/swine/East Java/UT6003/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271700 A/swine/Banten/UT6001/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271692 A/swine/Banten/UT3081/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271684 A/swine/Banten/UT3063/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271676 A/swine/Banten/UT3062/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI271668 A/swine/Banten/UT2071/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270270 A/Vietnam/HN31432M/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270182 A/Vietnam/UT30408III/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270174 A/Vietnam/HN30262IIIM3/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270166 A/Vietnam/UT30259/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270158 A/Vietnam/UT3062/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270150 A/Vietnam/UT3047III/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270139 A/Vietnam/UT3040II/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270134 A/Vietnam/UT3040/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270126 A/Vietnam/UT3035/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270118 A/Vietnam/UT3030/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI270064 A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI269985 A/whooper swan/Mongolia/21/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI269983 A/whooper swan/Mongolia/11/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268145 A/mallard/Jiangxi/227/2003 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268144 A/mallard/Jiangxi/6845/2003 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268143 A/mallard/Jiangxi/7787/2003 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268141 A/duck/Hunan/177/2005 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268140 A/mallard/Jiangxi/10071/2005 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268139 A/mallard/Jiangxi/10668/2005 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI268138 A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267939 A/whooper swan/Mongolia/7/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267932 A/whooper swan/Mongolia/1/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267907 A/Iran/14089/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267626 A/duck/Eastern China/Y122/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267625 A/duck/Eastern China/Y5/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267619 A/duck/Eastern China/L22/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267615 A/duck/Eastern China/C82/2008 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267031 A/Hubei/1/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI267016 A/pigeon/Zhejiang/17/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI266294 A/turkey/Egypt/09206sm-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI266293 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI266292 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI266273 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI263406 A/Cygnus olor/Caspian Sea/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259593 A/chicken/Egypt/C1Li27/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259592 A/chicken/Egypt/C1Lu9/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259591 A/chicken/Egypt/C1Tr1/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259590 A/duck/Egypt/D3Li420/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259589 A/duck/Egypt/D3Lu5/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259588 A/duck/Egypt/D2Li14/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259587 A/duck/Egypt/D2Br213/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259586 A/duck/Egypt/D1Li10/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259585 A/duck/Egypt/D1Br2/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259584 A/duck/Egypt/D1Tr220/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259560 A/Hong Kong/213-DkPass/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI259008 A/great crested-grebe/Qinghai/1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255775 A/crow/Assam/142119/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255421 A/Egypt/N15262/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255419 A/Egypt/N14604/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255412 A/Egypt/N11981/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255401 A/Egypt/N09539/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255399 A/Egypt/N09174/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255395 A/Egypt/N08835/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255393 A/Egypt/N07908/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255391 A/Egypt/N07392/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255389 A/Egypt/N05912/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255387 A/Egypt/N05049/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255385 A/Egypt/N04830/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255383 A/Egypt/N04434/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255381 A/Egypt/N04394/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255380 A/Egypt/N03072/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255378 A/Egypt/N03071/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255376 A/Egypt/N02770/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255374 A/Egypt/N02554/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255372 A/Egypt/N02127/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255370 A/Egypt/N02038/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255368 A/Egypt/N01982/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255366 A/Egypt/N01644/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255364 A/Egypt/N01360/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255362 A/Egypt/N00270/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255360 A/Egypt/N00269/2010 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255358 A/Egypt/7021-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255356 A/Egypt/5614-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255355 A/Egypt/5494-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255354 A/Egypt/3458-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255353 A/Egypt/3105-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255352 A/Egypt/2992-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255351 A/Egypt/2763-NAMRU3/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI254281 A/oriental magpie robin/Hong Kong/9298/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI254279 A/feral pigeon/Hong Kong/3409/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI253929 A/chicken/Egypt/1/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI253926 A/equine/Egypt/av1/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI251852 A/whitefronted goose/Netherlands/1/1999 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI251824 A/mallard/Sweden/88/2002 (A/H2N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI251619 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI251454 A/reassortant/IDCDC-RG13(Egypt/3300-NAMRU3/2008 x Puerto Rico/8/1934) (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI249978 A/duck/Hubei/46/2009 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI248517 A/mallard/Germany/WV355/07 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246293 A/duck/Korea/NSQ263/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246292 A/duck/Korea/JEQ149/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246291 A/chicken/Korea/YAQ173/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246290 A/chicken/Korea/USQ284/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246289 A/chicken/Korea/Gimje/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI246288 A/chicken/Korea/ISQ250/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI244426 A/turkey/Egypt/7/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI244097 A/duck/Vietnam/TG24/05 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI243275 A/R(duck/Mongolia/54/01-duck/Mongolia/47/01) (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI242473 A/reassortant/CBER_RG1(duck/Laos/3295/2006 x Puerto Rico/8/1934) (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241762 A/whooper swan/Denmark/7224/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241731 A/grey lag goose/Denmark/6692/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241723 A/tufted duck/Denmark/6431/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241683 A/peregrine/Denmark/6632/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241675 A/tufted duck/Denmark/6540/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241667 A/peacock/Denmark/60295/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241658 A/whooper swan/Denmark/7275/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241650 A/great crested grebe/Denmark/7498/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI241642 A/buzzard/Denmark/6370/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI240789 A/common pochard/Switzerland/WV4080110/2008 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239131 A/chicken/Hubei/wm/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239122 A/chicken/Hubei/wl/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239113 A/chicken/Hubei/wk/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239103 A/chicken/Hubei/wj/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239100 A/chicken/Hubei/wi/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI239091 A/chicken/Hubei/wh/1997 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238666 A/turkey/Italy/977/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238658 A/turkey/Italy/4580/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238650 A/turkey/Italy/4482/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238643 A/turkey/Italy/4426/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238635 A/turkey/Italy/3675/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238627 A/turkey/Italy/3283/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238619 A/turkey/Italy/2732/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238477 A/goose/Hong Kong/437-8/1999 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238469 A/goose/Hong Kong/437-6/1999 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238409 A/chicken/Italy/1067/1999 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238298 A/turkey/Italy/2379/2000 (A/H7N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238012 A/goose/Hong Kong/485.3/2000 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI238004 A/goose/Hong Kong/1032.9/2000 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237997 A/goose/Hong Kong/1032.6/2000 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237962 A/duck/Hong Kong/2986.1-2/2000 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237900 A/Goose/Hong Kong/3014.5/2000 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237641 A/wild duck/Bavaria/14/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237637 A/wild duck/Bavaria/13/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237635 A/wild duck/Bavaria/12/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237633 A/greylag goose /Bavaria/11/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237631 A/swan/Bavaria/9/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237629 A/swan/Bavaria/8/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237627 A/swan/Bavaria/7/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237625 A/swan/Bavaria/6/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237623 A/swan/Bavaria/5/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237621 A/Canada goose/Bavaria/4/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237619 A/mute swan/Bavaria/3/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237615 A/swan/Bavaria/2/2007 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237611 A/mallard/Bavaria/48/2006 (A/H0N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237610 A/mallard/Bavaria/47/2006 (A/H0N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237592 A/goosander/Bavaria/34/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237590 A/swan/Bavaria/33/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237588 A/swan/Bavaria/32/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237586 A/great crested grebe/Bavaria/31/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237584 A/common pochard/Bavaria/30/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237582 A/swan/Bavaria/29/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237580 A/swan/Bavaria/28/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237578 A/tufted duck/Bavaria/27/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237574 A/tufted duck/Bavaria/26/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237572 A/swan/Bavaria/25/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237570 A/swan/Bavaria/24/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI237568 A/swan/Bavaria/23/2006 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236930 A/waterfowl/Hong Kong/378.5/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236921 A/swine/Fujian/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236797 A/ostrich/SouthAfrica/2001 (A/H10N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236704 A/goose/Hong Kong/668.1/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236696 A/goose/Guangdong/xb/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236663 A/duck/Guangxi/xa/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236563 A/Hong Kong/378.1/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236544 A/Chicken/Hong Kong/317.5/2001 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235946 A/goose/Hong Kong/739.2/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235919 A/environment/Hong Kong/674.15/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235911 A/egret/Hong Kong/757.2/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235903 A/duck/Zhejiang/bj/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235895 A/duck/Shanghai/xj/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235868 A/duck/Hubei/wg/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235840 A/chicken/Jilin/xv/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235832 A/chicken/Jilin/hh/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235823 A/chicken/Jilin/hg/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235815 A/chicken/Jilin/hf/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235807 A/chicken/Jilin/he/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235768 A/chicken/Hubei/wf/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235758 A/chicken/Hong Kong/409.1/2002 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235260 A/swine/Fujian/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235196 A/Mallard/Huadong/Y/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235177 A/goose/Jilin/hb/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235172 A/goose/Fujian/bb/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235138 A/duck/Hubei/wq/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235129 A/duck/Hubei/wp/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235113 A/chicken/Legok/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235097 A/chicken/Jilin/xw/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235090 A/chicken/Jilin/hq/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235081 A/chicken/Jilin/hp/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235073 A/chicken/Jilin/ho/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235062 A/chicken/Jilin/hn/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235059 A/chicken/Jilin/hm/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235051 A/chicken/Jilin/hj/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235043 A/chicken/Jilin/ha/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235031 A/chicken/Indonesia/9/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235023 A/chicken/Indonesia/8/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235011 A/chicken/Indonesia/11/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235003 A/chicken/Hubei/wo/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234996 A/chicken/Hubei/wn/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234715 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234707 A/Ck/Indonesia/BL/2003 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234630 A/Chicken/Vietnam/CM/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234621 A/chicken/Jilin/hk/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234619 A/chicken/Hunan/fg/2004 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI234505 A/Thailand/NA60/2005 (A/H5N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)

_________________
www.twitter.com/hniman

HA sequence just prior to resistance acquisition

LOCUS CY091724 1777 bp cRNA linear VRL 10-JUN-2011
DEFINITION Influenza A virus (A/Singapore/TT89/2011(H1N1)) hemagglutinin (HA)
gene, complete cds.
ACCESSION CY091724
VERSION CY091724.1 GI:335883174
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Singapore/TT89/2011(H1N1))
ORGANISM Influenza A virus (A/Singapore/TT89/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1777)
AUTHORS Hurt,A., Lee,R., Leang,L., Phuah,S., Lin,C., Deng,Y., Caldwell,N.,
Freeman,K., Komadina,N., Smith,D., Speers,D., Kelso,A., Lin,R.,
Maurer-Stroh,S. and Barr,I.
TITLE Increased detection of a novel A(H1N1)2009 influenza variant with
reduced oseltamivir and zanamivir sensitivity
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1777)
AUTHORS Phuah,S.P., Meng,S., Teo,M.L., Yong,T.Y., Loh,P.L., Tang,Y.L.,
Ho,Y.L., Lim,L., Quek,D., Chen,S.L., Cui,L. and Lin,R.T.P.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2011) National Public Health Laboratory, Ministry
of Health Singapore, Block 203, CDC2, Tan Tock Seng Hospital, 11
Jalan Tan Tock Seng, Singapore, Singapore 308433, Singapore
FEATURES Location/Qualifiers
source 1..1777
/organism="Influenza A virus
(A/Singapore/TT89/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/Singapore/TT89/2011"
/serotype="H1N1"
/host="human"
/db_xref="taxon:1041087"
/segment="4"
/lab_host="C1 passage(s)"
/country="Singapore"
/collection_date="25-Jan-2011"
gene 33..1733
/gene="HA"
CDS 33..1733
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="AEH59415.1"
/db_xref="GI:335883175"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPQAGAKS
FYKNLIWLVKKGNSYPKLSNSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFV
GTSKYSKKFKPEIAVRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLLVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNAQGSGYAADLKSTQNAIDKI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
"
sig_peptide 33..83
/gene="HA"
mat_peptide 84..1064
/gene="HA"
/product="HA1"
mat_peptide 1065..1730
/gene="HA"
/product="HA2"
ORIGIN
1 agcaaaagca ggggaaaaca aaagcaacaa aaatgaaggc aatactagta gttctgctat
61 atacatttgc aaccgcaaat gcagacacat tatgtatagg ttatcatgcg aacaattcaa
121 cagacactgt agacacagta ctagaaaaga atgtaacagt aacacactct gttaaccttc
181 tagaagacaa gcataacggg aaactatgca aactgagagg ggtagcccca ttgcatttgg
241 gtaaatgtaa cattgctggc tggatcctgg gaaatccaga gtgtgaatca ctctccacag
301 caagctcatg gtcctacatc gtggaaacat ctagttcaga caatggaacg tgctacccag
361 gagatttcat caattatgag gagctaagag agcaattgag ctcagtgtca tcatttgaaa
421 ggtttgagat attccccaag acaagttcat ggcccaatca tgactcgaac aaaggtgtaa
481 cggcagcatg tcctcaagct ggagcaaaaa gcttctacaa aaatttaata tggctagtta
541 aaaaaggaaa ctcataccca aagctcagca actcctacat taacgataaa gggaaagaag
601 tcctcgtgct atggggcatt caccatccat ctactagtgc tgaccaacaa agtctctatc
661 agaatgcaga tgcatatgtt tttgtgggga catcaaaata cagcaagaag ttcaagccgg
721 aaatagcagt aagacccaaa gtgagggatc aagaagggag aatgaactat tactggacac
781 tagtagagcc gggagacaaa ataacattcg aagcaactgg aaatctattg gtaccgagat
841 atgcattcgc aatggaaaga aatgctggat ctggtattat catttcagat acaccagtcc
901 acgattgcaa tacaacttgt cagacaccca agggtgctat aaacaccagc ctcccatttc
961 agaatataca tccgatcaca attggaaaat gtcccaaata tgtaaaaagc acaaaattga
1021 gactggccac aggattgagg aatgtcccgt ctattcaatc tagaggccta tttggggcca
1081 ttgccggttt cattgaaggg gggtggacag ggatggtaga tggatggtac ggttatcacc
1141 atcaaaatgc gcaggggtca ggatatgcag ccgacctgaa gagcacacag aatgccattg
1201 acaagattac taacaaagta aattctgtta ttgaaaagat gaatacacag ttcacagcag
1261 taggtaaaga gttcaaccac ctggaaaaaa gaatagagaa tttaaataaa aaagttgatg
1321 atggtttcct ggacatttgg acttacaatg ccgaactgtt ggttctattg gaaaatgaaa
1381 gaactttgga ctaccacgat tcaaatgtga aaaacttata tgaaaaggta agaagccagt
1441 taaaaaacaa tgccaaggaa attggaaacg gctgctttga attttaccac aaatgcgaca
1501 acacgtgcat ggaaagtgtc aaaaatggga cttatgacta cccaaaatac tcagaggaag
1561 caaaattaaa cagagaagaa atagatgggg taaagctgga atcaacaagg atttaccaga
1621 ttttggcgat ctattcaact gtcgccagtt cattggtact ggtagtctcc ctgggggcaa
1681 tcagtttctg gatgtgctct aatgggtctc tacagtgtag aatatgtatt taacattatg
1741 atttcagaag catgagaaaa acacccttgt ttctact

_________________
www.twitter.com/hniman

NA sequences with S246N

LOCUS CY091711 1443 bp cRNA linear VRL 10-JUN-2011
DEFINITION Influenza A virus (A/Singapore/SGH01/2011(H1N1)) neuraminidase (NA)
gene, complete cds.
ACCESSION CY091711
VERSION CY091711.1 GI:335883148
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Singapore/SGH01/2011(H1N1))
ORGANISM Influenza A virus (A/Singapore/SGH01/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1443)
AUTHORS Hurt,A., Lee,R., Leang,L., Phuah,S., Lin,C., Deng,Y., Caldwell,N.,
Freeman,K., Komadina,N., Smith,D., Speers,D., Kelso,A., Lin,R.,
Maurer-Stroh,S. and Barr,I.
TITLE Increased detection of a novel A(H1N1)2009 influenza variant with
reduced oseltamivir and zanamivir sensitivity
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1443)
AUTHORS Phuah,S.P., Meng,S., Teo,M.L., Yong,T.Y., Loh,P.L., Tang,Y.L.,
Ho,Y.L., Lim,L., Quek,D., Chen,S.L., Cui,L. and Lin,R.T.P.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2011) National Public Health Laboratory, Ministry
of Health Singapore, Block 203, CDC2, Tan Tock Seng Hospital, 11
Jalan Tan Tock Seng, Singapore, Singapore 308433, Singapore
FEATURES Location/Qualifiers
source 1..1443
/organism="Influenza A virus
(A/Singapore/SGH01/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/Singapore/SGH01/2011"
/serotype="H1N1"
/host="human; gender F"
/db_xref="taxon:1041086"
/segment="6"
/country="Singapore"
/collection_date="02-Feb-2011"
gene 21..1430
/gene="NA"
CDS 21..1430
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AEH59402.1"
/db_xref="GI:335883149"
/translation="MNPNQKIITIGSVCMTIGMANLILQIGNIISIWISHSIQLGNQN
QIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSK
DNSIRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMS
CPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKS
WRNNILRTQESECACVNGSCFTVMTDGPNDGQASYKIFRIEKGKIVKSVEMNAPNYHY
EECSCYPDSSEITCVCRDNWHGANRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGS
CGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRNGFEMIWDPNGWTETDNNFSIKQD
IVGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNS
DTVGWSWPDGAELPFTIDK"
ORIGIN
1 agcaaaagca ggagtttaaa atgaatccaa accaaaagat aataaccatt ggttcggtct
61 gtatgacaat tggaatggct aacttaatat tacaaattgg aaacataatc tcaatatgga
121 ttagccactc aattcaactt gggaatcaaa atcagattga aacatgcaat caaagcgtca
181 ttacttatga aaacaacact tgggtaaatc agacatatgt taacatcagc aacaccaact
241 ttgctgctgg acagtcagtg gtttccgtga aattagcggg caattcttct ctctgccctg
301 ttagtggatg ggctatatac agtaaagaca acagtataag aatcggttcc aagggggatg
361 tgtttgtcat aagggaacca ttcatatcat gctccccttt ggaatgcaga accttcttct
421 tgactcaagg ggccttgcta aatgacaaac attccaatgg aaccattaaa gacaggagcc
481 catatcgaac cctaatgagc tgtcctattg gtgaagttcc ctctccatac aactcaagat
541 ttgagtcagt cgcttggtca gcaagtgctt gtcatgatgg catcaattgg ctaacaattg
601 gaatttctgg cccagacaat ggggcagtgg ctgtgttaaa gtacaacggc ataataacag
661 acactatcaa gagttggaga aacaatatat tgagaacaca agagtccgaa tgtgcatgtg
721 taaatggctc ttgctttact gtgatgaccg atggaccaaa tgatggacag gcctcataca
781 agatcttcag aatagaaaag ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt
841 atcactatga ggaatgctcc tgttatcctg attctagtga aatcacatgt gtgtgcaggg
901 ataactggca tggcgcgaat cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga
961 taggatacat atgcagtggg attttcggag acaatccacg ccctaatgat aagacaggca
1021 gttgtggtcc agtatcgtct aatggagcaa atggagtaaa aggattttca ttcaaatacg
1081 gcaatggtgt ttggataggg agaactaaaa gcattagttc aagaaacggt tttgagatga
1141 tttgggatcc gaacggatgg actgagacag acaataactt ctcaataaag caagatatcg
1201 taggaataaa tgagtggtca ggatatagcg ggagttttgt tcaacatcca gaactaacag
1261 ggctggattg tataagacct tgcttctggg ttgaactaat cagagggcga cccaaagaga
1321 acacaatctg gactagcggg agcagcatat ccttttgtgg tgtaaacagt gacactgtgg
1381 gttggtcttg gccagacggt gctgagttgc catttaccat tgacaagtaa tttgttcaaa
1441 aaa

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The following series is the GISAID NA pedigree profile for A/Singapore/SGH01/2011 (and a thank you to the Genbank staff's quick response making these sequences available)

C267T

EPI319508 A/Netherlands/219/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI319470 A/H1N1Genoa/05/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI319438 A/Cameroon/LEID/01/11/1387/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI318261 A/Linkoping/7/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI313295 A/Lyon/48.49/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI313289 A/Lyon/47.431/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI308431 A/Chicago/WRAIR1690P/2009 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI308127 A/Santo Domingo/WRAIR1404T/2009 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI308015 A/Dakar/WRAIR0020T/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI308007 A/Dakar/WRAIR0019T/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307999 A/Dakar/WRAIR0018T/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI307991 A/Dakar/WRAIR0018N/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI306278 A/Finland/701/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI302350 A/DARWIN/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI301422 A/Lyon/CHU/43.28/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI301412 A/Ghana/FS/10-4400/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI295616 A/Cameroon/10v-813/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI295614 A/Cameroon/10v-1090/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI295611 A/Cameroon/10v-00812/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287175 A/Myanmar/JP-S-026/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287011 A/Ghana/FS-10-4026/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI287007 A/Ghana/FS-10-4009/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI286995 A/Dakar/031/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI286675 A/Myanmar/JP-S-004/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI286673 A/Myanmar/JP-S-001/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI286671 A/Myanmar/JP-S-030/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI286663 A/OSAKA/60/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283649 A/Vienna/INS369/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI283609 A/Tallinn/INS431/2010 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI282660 A/Santo Domingo/WRAIR1414N/2009 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI281841 A/Frankfurt/INS303/2009 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280357 A/Cote d'Ivorie/830/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI280354 A/Cote d'Ivorie/234/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278824 A/Georgia/02/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278646 A/swine/Germany-NI/R3394/09 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278642 A/swine/Germany-NI/R258/09 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278639 A/swine/Germany-NI/R248/09 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278637 A/swine/Germany-NI/R211/09 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278509 A/Hong Kong/1881/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI278122 A/Moldova/5278/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273930 A/Kentucky/05/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273634 A/Oregon/01/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273031 A/swine/Gent/130/2002 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273030 A/swine/Gent/06/2001 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273029 A/swine/Gent/107/2000 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273028 A/swine/Gent/112/2007 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273027 A/swine/Gent/106/2007 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273026 A/swine/Gent/83/2006 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273025 A/swine/Gent/132/2005 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI273024 A/swine/Belgium/1/1998 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI257607 A/Guangxi-Haicheng/SWL48/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI256852 A/Luxembourg/251/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI256850 A/Luxembourg/184/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI256815 A/Dakar/018/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI256813 A/Dakar/017/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI256811 A/Dakar/016/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255980 A/Valladolid/35/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255856 A/Cameroon/463/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI255842 A/Saarland/21/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI253838 A/Rheinland-Pfalz/81/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI253764 A/Baden-Wuerttemberg/511/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI253740 A/Berlin/210/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI247900 A/Wisconsin/629-D00533/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI247780 A/Wisconsin/629-D00036/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI244101 A/swine/Germany/R3314/09 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI236426 A/swine/Lidkoeping/1193/2002 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI235547 A/Lyon/2490/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI225741 A/swine/Cotes dArmor/0190/2006 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI216856 A/Haiti/265/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI186623 A/swine/Cotes d'Armor/016007/2005 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI186622 A/swine/Cotes d'Armor/002007/2006 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI186621 A/swine/Cotes d'Armor/0227/2005 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI186620 A/swine/Cotes d'Armor/0136_18/2006 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI175096 A/swine/Belgium/1/1998 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI161647 A/swine/Italy/247578/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI161646 A/swine/Italy/65296/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI161645 A/swine/Italy/53949/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI120449 A/swine/Italy/66945/2006 (A/H3N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI32639 A/swine/Spain/53207/2004 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI12298 A/swine/Italy/1509-6/97 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)
EPI9064 A/swine/Boxtel/144-15/97 (A/H1N1) segment 6 (NA) 27.0 6.497031e+00 14/14 (100%)

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