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Novel H1N1 In Spain In 2010 With D225G

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niman

Post subject: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 7:50 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

Recently deposited sequences by Instituto de Salud Carlos III at GISAID from the spring of 2010 have several of the markers found in the novel HA sequences circulating in Chihuahua.

One of the sequences, A/Galicia/RR6669/2010, has D225G as a mixture.

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 7:53 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

Sample was collected May 11, 2010 from a 56M and has S165N, A189T, D225G, V275I in the partial sequence.

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 8:13 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

T163C

EPI304927 A/Galicia/RR6720/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304926 A/Galicia/RR6722/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304924 A/Galicia/RR6724/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304923 A/Galicia/RR6725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304922 A/Galicia/RR6726/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304921 A/Galicia/RR6727/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304907 A/Galicia/RR6669/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304771 A/LaRioja/RR6131/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304758 A/Murcia/RR6220/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI287717 A/Qingdao/63/2010 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI282231 A/Managua/5339.04/2009 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI276366 A/SC/31/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276293 A/SC/93980120/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273805 A/Florida/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI272377 A/WS/33 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI272375 A/NWS/33 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI256130 A/Hubei-Wuchang/SWL1407/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI255905 A/Georgia/4805/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI253535 A/swine/Italy/85437/2009 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI248570 A/Almaty/32/1998 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI247384 A/New Mexico/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI247131 A/swine/Italy/85429/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI242890 A/WS/1933 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI242886 A/NWS/33 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI242756 A/swine/Northern Ireland/1938 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI242754 A/swine/Cambridge/1939 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI242623 A/swine/NI/1938 (A/H1) segment 4 (HA) 27.0 6.19077
EPI242606 A/swine/Illinois/63 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI242603 A/swine/Cambridge/39 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI242092 A/WSN/33 (A/H0 seasonal) segment 4 (HA) 27.0 6.19077
EPI242085 A/WSN/1933 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI242077 A/WSN/1933 TS61 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI242056 A/United Kingdom/1/1933 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI241907 A/NWS/G70C (A/H1N9) segment 4 (HA) 27.0 6.19077
EPI241906 A/NWS-Tokyo (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI241905 A/NWS-Mvi (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI241904 A/NWS-G70c (A/H1N9) segment 4 (HA) 27.0 6.19077
EPI241899 A/NWS-F (A/H1N2 seasonal) segment 4 (HA) 27.0 6.19077
EPI241888 A/Melbourne/1-MA/1946 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI241050 A/Phila/1935 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI240999 A/Melbourne/1/1946 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI236037 A/lake ice/Lake Park/Siberia/9.9/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236035 A/lake ice/Lake Park/Siberia/9.5/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236034 A/lake ice/Lake Park/Siberia/9.4/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236027 A/lake ice/Lake Park/Siberia/7.8/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236026 A/lake ice/Lake Park/Siberia/7.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236025 A/lake ice/Lake Park/Siberia/7.5/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236023 A/lake ice/Lake Park/Siberia/7.3/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236022 A/lake ice/Lake Park/Siberia/7.2/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236021 A/lake ice/Lake Park/Siberia/7.10/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236020 A/lake ice/Lake Park/Siberia/6.8/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236019 A/lake ice/Lake Park/Siberia/6.7/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236015 A/lake ice/Lake Park/Siberia/5.9/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236014 A/lake ice/Lake Park/Siberia/5.6b/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236013 A/lake ice/Lake Park/Siberia/5.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236010 A/lake ice/Lake Park/Siberia/5.4/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236007 A/lake ice/Lake Park/Siberia/4.9/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236006 A/lake ice/Lake Park/Siberia/4.8/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236005 A/lake ice/Lake Park/Siberia/4.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236003 A/lake ice/Lake Park/Siberia/4.2/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236002 A/lake ice/Lake Park/Siberia/4.10/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI236001 A/lake ice/Lake Park/Siberia/4.1/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235999 A/lake ice/Lake Park/Siberia/21.9/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235998 A/lake ice/Lake Park/Siberia/21.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235997 A/lake ice/Lake Park/Siberia/21.5/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235996 A/lake ice/Lake Park/Siberia/21.3/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235993 A/lake ice/Lake Park/Siberia/19.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235990 A/lake ice/Lake Park/Siberia/18.8/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235985 A/lake ice/Lake Park/Siberia/18.1/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235981 A/lake ice/Lake Park/Siberia/17.10/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235977 A/lake ice/Lake Park/Siberia/16.10/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235976 A/lake ice/Lake Park/Siberia/15.6/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235972 A/lake ice/Lake Park/Siberia/14.1/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235968 A/lake ice/Lake Park/Siberia/13.5/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235966 A/lake ice/Lake Park/Siberia/13.3/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235964 A/lake ice/Lake Park/Siberia/13.10/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235963 A/lake ice/Lake Park/Siberia/13.1/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235959 A/lake ice/Lake Park/Siberia/11.5/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235958 A/lake ice/Lake Park/Siberia/11.3/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235957 A/lake ice/Lake Park/Siberia/10.7/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI235956 A/lake ice/Lake Park/Siberia/10.3/2002 (A/H1) segment 4 (HA) 27.0 6.19077
EPI230642 A/Wilson-Smith/33 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI230631 A/Wilson-Smith/1933 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI230593 A/Melbourne/35 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI223440 A/Texas/43272683/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI185275 A/Taiwan/VGHYM0711-20/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI184841 A/Egypt/N04527/2009 (A/H5N1) segment 4 (HA) 27.0 6.19077
EPI171372 A/Siena/9/1989 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI153834 A/swine/Wisconsin/1/61 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI131367 A/CHR/157/83 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI130667 A/Tokyo/3/67 (A/H1N2 seasonal) segment 4 (HA) 27.0 6.19077
EPI129255 A/Finland/9/1984 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI129249 A/Finland/1/1984 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI129231 A/Leningrad/133/1991 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI129229 A/Leningrad/109/1991 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI124028 A/swine/Wisconsin/1/1968 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI71801 A/swine/Wisconsin/2/1966 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI71782 A/swine/Wisconsin/1/1967 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI71763 A/swine/Wisconsin/1/1957 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI61878 A/swine/Tennessee/19/1976 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI61137 A/Memphis/1/1984 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI61080 A/Albany/4836/1950 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI59550 A/Christ's Hospital/157/1982 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI58258 A/Tonga/14/1984 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI57688 A/Memphis/39/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI57574 A/New Zealand/7/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI56999 A/Albany/4835/1948 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI25489 A/swine/Korea/S175/2004 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI25445 A/swine/Korea/S10/2004 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI15204 A/Ecuador/2625/01 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI11563 A/Fiji/15899/83 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI9339 A/Swine/North Carolina/98225/01 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI8637 A/human/Taiwan/0563/95 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI4897 A/swine/Wisconsin/1/61 (A/H1N1) segment 4 (HA) 27.0 6.19077

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 8:16 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

C682T
EPI310173 A/Wisconsin/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310136 A/Vermont/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310069 A/North Carolina/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310055 A/New York/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310049 A/New Jersey/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310002 A/Massachusetts/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309946 A/Maine/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309892 A/Idaho/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI308933 A/South Carolina/AF21803/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308926 A/North Carolina/AF21796/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308923 A/New Jersey/AF21791/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308912 A/Florida/AF21771/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308910 A/Arizona/AF21768/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI306130 A/Denmark/111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304927 A/Galicia/RR6720/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304926 A/Galicia/RR6722/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304925 A/Galicia/RR6723/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304924 A/Galicia/RR6724/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304923 A/Galicia/RR6725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304922 A/Galicia/RR6726/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304921 A/Galicia/RR6727/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304907 A/Galicia/RR6669/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI301814 A/Aragon/RR6925/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI295399 A/El Salvador/798/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI286988 A/CapeTown/29/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI280320 A/Pennsylvania/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278878 A/Mexico/2880/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278554 A/Ukraine/221/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278552 A/Ukraine/229/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278392 A/Ghana/FS-1940/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278372 A/Ghana/FS-09-1181/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276632 A/Germany/AF2210/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276629 A/Germany/AF2207/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273900 A/California/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273891 A/Dnipropetrovsk/445/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273838 A/Wisconsin/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273792 A/Wisconsin/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273738 A/Minnesota/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273662 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273656 A/Hawaii/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273626 A/Arizona/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI257492 A/Hubei-Shashi/SWL1509/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI256865 A/Georgia/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI255921 A/Israel/MF4683/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI255905 A/Georgia/4805/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI254890 A/New York/3230/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI253851 A/Sachsen/156/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI243974 A/St-Petersburg/99/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 8:20 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

T903G

EPI310173 A/Wisconsin/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310136 A/Vermont/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310069 A/North Carolina/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310055 A/New York/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310049 A/New Jersey/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310002 A/Massachusetts/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309946 A/Maine/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI308933 A/South Carolina/AF21803/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308926 A/North Carolina/AF21796/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308923 A/New Jersey/AF21791/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308912 A/Florida/AF21771/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308910 A/Arizona/AF21768/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI306130 A/Denmark/111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI305529 A/Orebro/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI305527 A/Uppsala/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304927 A/Galicia/RR6720/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304926 A/Galicia/RR6722/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304925 A/Galicia/RR6723/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304924 A/Galicia/RR6724/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304923 A/Galicia/RR6725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304922 A/Galicia/RR6726/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304921 A/Galicia/RR6727/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304907 A/Galicia/RR6669/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304463 A/Norway/322/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI301814 A/Aragon/RR6925/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI301445 A/Luxembourg/548/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI295399 A/El Salvador/798/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI286988 A/CapeTown/29/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283773 A/Habana/7374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283772 A/Habana/10295/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283769 A/Habana/9765/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI280320 A/Pennsylvania/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278896 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273662 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Thu Apr 14, 2011 8:20 pm

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

A957G

EPI310173 A/Wisconsin/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310136 A/Vermont/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310069 A/North Carolina/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310055 A/New York/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310049 A/New Jersey/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310002 A/Massachusetts/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309946 A/Maine/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309892 A/Idaho/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI308933 A/South Carolina/AF21803/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308926 A/North Carolina/AF21796/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308923 A/New Jersey/AF21791/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308912 A/Florida/AF21771/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI308910 A/Arizona/AF21768/2011 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI306130 A/Denmark/111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304927 A/Galicia/RR6720/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304926 A/Galicia/RR6722/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304925 A/Galicia/RR6723/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304924 A/Galicia/RR6724/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304923 A/Galicia/RR6725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304922 A/Galicia/RR6726/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304921 A/Galicia/RR6727/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304907 A/Galicia/RR6669/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304899 A/Navarra/RR6457/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304871 A/LaRioja/RR6520/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304850 A/LaRioja/RR6517/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304848 A/LaRioja/RR6511/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304839 A/LaRioja/RR6477/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI304710 A/Ceuta/RR5262/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI301814 A/Aragon/RR6925/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI295399 A/El Salvador/798/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI295335 A/swine/South Dakota/152B/2009 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI292293 A/swine/Minnesota/44837-3/2009 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI288182 A/Saint-Petersburg/RII96/2009 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI286988 A/CapeTown/29/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283773 A/Habana/7374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283772 A/Habana/10295/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283769 A/Habana/9765/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI283319 A/swine/Saitama/1/2004 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI283318 A/swine/Saitama/27/2003 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI282735 A/Mexico City/WRAIR1773T/2010 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI280320 A/Pennsylvania/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI279063 A/VICTORIA/804/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278896 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI278878 A/Mexico/2880/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276632 A/Germany/AF2210/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276629 A/Germany/AF2207/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276540 A/SC/84/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276395 A/ENG/743/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276372 A/ENG/94260020/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276335 A/ENG/94160004/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276320 A/ENG/722/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276319 A/ENG/721/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276302 A/ENG/711/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI276194 A/California/AF2119/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273903 A/Taiwan/27/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273900 A/California/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273891 A/Dnipropetrovsk/445/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273838 A/Wisconsin/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273792 A/Wisconsin/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273738 A/Minnesota/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273674 A/Arizona/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273662 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273656 A/Hawaii/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI273626 A/Arizona/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI272726 A/Taiwan/26/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI272701 A/Qingdao/1261/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI271658 A/swine/Illinois/03036/2010 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI270787 A/swine/Illinois/03033/2010 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI269538 A/swine/Iowa/03026/2010 (A/H1N2) segment 4 (HA) 27.0 6.19077
EPI253879 A/Schleswig-Holstein/16/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI253749 A/Berlin/83/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI247472 A/Vermont/30/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI247252 A/Colorado/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI246148 A/Yamagata/74/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI246147 A/Yamagata/50/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI246146 A/Yamagata/39/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI246144 A/Yamagata/12/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI246088 A/Yamagata/68/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI246086 A/Yamagata/66/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI243381 A/Nagasaki/07N020/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI243325 A/Hyogo/07K030/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI243309 A/Hokkaido/07H007/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI242222 A/chicken/Japan/1925 (A/H7N7) segment 4 (HA) 27.0 6.19077
EPI240736 A/Pavia/66/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI220190 A/Thailand/56/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI220181 A/Thailand/530/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI220175 A/Thailand/496/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI220154 A/Thailand/309/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI220103 A/New Jersey/AF09/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI217447 A/Catalonia/S1761/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI212206 A/Catalonia/S1501/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI211657 A/Bratislava/1258/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI211552 A/Netherlands/345/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI210465 A/Slovenia/2628/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI179805 A/Managua/3307.01/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI179749 A/Managua/1038.01/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI171438 A/Denmark/02/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI168532 A/Aichi/28/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI163060 A/Thailand/380/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI163058 A/Thailand/375/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI162545 A/IWATE/29/2008 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI162544 A/ISHIKAWA/139/2008 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI162542 A/IBARAKI/75/2007 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI162530 A/CHIBA/64/2008 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI160580 A/Thailand/427/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI160295 A/Caen/1670/2006 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157934 A/Lyon/94/2006 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157547 A/Concepcion/7195/2006 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157296 A/HOKKAIDO/56/2007 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157295 A/HOKKAIDO/49/2007 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157288 A/GIFU-C/30/2007 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI157277 A/EHIME/2/2008 (A/H1 seasonal) segment 4 (HA) 27.0 6.19077
EPI151845 A/Madagascar/2121/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI151844 A/Madagascar/2119/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI151805 A/Sachsen/1/08 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI138766 A/Wisconsin/35/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI132091 A/Milan/10/2006 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131730 A/Austria/403625/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131714 A/Austria/402939/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131708 A/Austria/402748/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131694 A/Austria/402133/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131688 A/Austria/401927/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI131668 A/Austria/399282/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI129275 A/Finland/72/1988 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI72314 A/Kentucky/UR06-0057/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI71763 A/swine/Wisconsin/1/1957 (A/H1N1) segment 4 (HA) 27.0 6.19077
EPI46183 A/Minnesota/2/2006 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI46125 A/Oklahoma/7/2005 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.19077
EPI3223 A/duck/Taiwan/Ya103/1993 (A/H7N7) segment 4 (HA) 27.0 6.19077
EPI3219 A/duck/Taiwan/33/1993 (A/H7N7) segment 4 (HA) 27.0 6.19077

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CopitoSP

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Fri Apr 15, 2011 6:17 am

Joined: Thu Dec 10, 2009 1:14 pm
Posts: 548

Quote:

Monitoring Period: Weeks 21-22/2010 (from 23 May to 5 June 2010) - Influenza Surveillance in Spain

http://vgripe.isciii.es/gripe/documento ... rn2210.pdf

The Public Health Department of Galicia reported a cluster of severe cases from four households and has been developing since the week19/2010. So far six cases have been reported serious pandemic virus confirmed(five and one in Pontevedra Ourense) with two deaths.

Quote:

Influenza surveillance in Spain. Inter season 2010. Week 24/2010. Monitoring Period: Weeks 23-24/2010 (6 to June 19, 2010)

http://vgripe.isciii.es/gripe/documento ... rn2410.pdf

The Health Department of Galicia has updated two new cases confirmed with severe pandemic influenza in the Complexo Hospitalario de Ourense (CHOU) and so far had been reported six cases of confirmed serious AnH1N1 between weeks 19-22/2010 (9 to 26 May).

The first new case was reported in week 23/2010 and is a woman of 73 years, asthma, seasonal vaccination with a history of 2009-10 and unknown vaccination status for the pandemic vaccine, did not need to enter the ICU and was discharged . The second case reported in week 24/2010 is a woman of 77 years, asthma, seasonal vaccine administered with and without a history of pandemic vaccination. Is hospitalized in stable condition without entering the ICU. None of these cases is related to the previously reported cases

Quote:

Influenza surveillance in Spain Inter season 2010. Week 26/2010. Monitoring Period: Weeks 25-26/2010 (from 20 June to 3 July 2010)

http://vgripe.isciii.es/gripe/documento ... rn2610.pdf

From the Public Health Department of Galicia has updated on 25/2010 week confirming a new case of severe pandemic in the Regional Hospital of A Coruña. This is a man of 29 years with risk factors (obesity with a BMI = 40) with no history of influenza vaccine, which did not require ICU admission and was discharged on 25 June. So far, There have been nine severe flu cases confirmed with AnH1N1 between weeks 19-25/2010 (9 May to 26 June).

Quote:

Influenza surveillance in Spain Week 20/2010 (from 16 to 22 May 2010

http://vgripe.isciii.es/gripe/documento ... rn2010.pdf

To date, 15 viruses have been identified which have the D222G mutation in the HA1 region.

Andalusia (3), Castilla La Mancha (4), Catalonia (3), Galicia (2) and Country Basque (3).

.....

Influenza surveillance in Spain Inter season 2010. Week 28/2010. Monitoring Period: Weeks 27-28/2010 (4 to 17 July 2010

http://vgripe.isciii.es/gripe/documento ... rn2810.pdf

To date, 20 viruses have been identified which have the D222G mutation in the HA1 region: Andalusia (3), Castilla La Mancha (4), Catalonia (3), Galicia (7) and the Basque Country (3). All of them have been detected in critically ill patients.

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Fri Apr 15, 2011 6:22 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

Commentary

http://www.recombinomics.com/News/04151 ... uster.html

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Fri Apr 15, 2011 8:05 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

niman wrote:

Genbank pedigree

CY089605.1 Influenza A virus (A/Mexico/InDRE2222/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY089593.1 Influenza A virus (A/Mexico/InDRE2200/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY089590.1 Influenza A virus (A/Mexico/InDRE2197/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY089587.1 Influenza A virus (A/Mexico/InDRE2195/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY089583.1 Influenza A virus (A/Mexico/InDRE2192/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY089391.1 Influenza A virus (A/Mexico/InDRE1947/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY089389.1 Influenza A virus (A/Mexico/InDRE1946/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY089387.1 Influenza A virus (A/Mexico/InDRE1945/2011(H1N1)) hemagglutinin (HA) gene, complete cds 34.2 34.2 100% 3.7 100%
CY084226.1 Influenza A virus (A/South Carolina/AF21803/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY084219.1 Influenza A virus (A/North Carolina/AF21796/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY084216.1 Influenza A virus (A/New Jersey/AF21791/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY084205.1 Influenza A virus (A/Florida/AF21771/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY084203.1 Influenza A virus (A/Arizona/AF21768/2011(H1N1)) hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
HQ880591.1 Influenza A virus (A/Denmark/111/2010(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 34.2 34.2 100% 3.7 100%
CY070040.1 Influenza A virus (A/Germany/AF2210/2010(H1N1)) segment 4 sequence 34.2 34.2 100% 3.7 100%
CY070037.1 Influenza A virus (A/Germany/AF2207/2010(H1N1)) segment 4 sequence 34.2 34.2 100% 3.7 100%
CY062162.1 Influenza A virus (A/New York/3230/2010(H1N1)) segment 4, complete sequence 34.2 34.2 100% 3.7 100%

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niman

Post subject: Re: Novel H1N1 In Spain In 2010 With D225G

Posted: Sat Apr 16, 2011 8:21 am

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27487
Location: Pittsburgh, PA USA

niman wrote:

The clinicals on this case has been published. It is the most recent collection in the publication and the patient survived and was hospitalized but was not in the ICU. The cases in this paper were largely collected in 2009, while this case and the severe cases with the novel subclade were from the summer of 2010, which might explain there absence in the table, as well as an absence from GISAID because they are not yet published

http://www.cnic.org.cn/pdf/2011-3-4/Sub ... utinin.pdf

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