Rhiza Labs FluTracker Forum

US Army Medical Research Unit - Kenya (USAMRU-K), GEIS Human Influenza Program has released a 13 partial HA sequences (at GISAID) collected in late 2010. 11 of the sequences had S188T and 1 had S188N.

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www.twitter.com/hniman

S188T pedigree at GISAID

EPI307158 A/Kenya/054/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307157 A/Kenya/053/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307152 A/Kenya/065/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307151 A/Kenya/064/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307150 A/Kenya/063/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307149 A/Kenya/062/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307148 A/Kenya/061/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307147 A/Kenya/060/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307145 A/Kenya/058/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307144 A/Kenya/056/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI307143 A/Kenya/055/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306383 A/Vladivistok/7/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306151 A/Denmark/137/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306149 A/Denmark/134/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306148 A/Denmark/133/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306147 A/Denmark/132/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306144 A/Denmark/131/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306143 A/Denmark/130/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306140 A/Denmark/129/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306137 A/Denmark/125/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306133 A/Denmark/115/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306132 A/Denmark/114/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306131 A/Denmark/113/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306128 A/Denmark/109/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI306126 A/Denmark/107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305521 A/Stockholm/4/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305518 A/Stockholm/3/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305497 A/YAMAGUCHI/34/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305495 A/HIROSHIMA/50/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305494 A/HIROSHIMA/24/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305491 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305488 A/SHIZUOKA/20/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305485 A/KITAKYUSYU/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305482 A/KITAKYUSYU/9/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305479 A/YOKOHAMA/31/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305476 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305466 A/HIROSHIMA-C/2/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305464 A/YAMAGATA/175/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305453 A/Laos/O072/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305452 A/Laos/O066/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305451 A/FUKUSHIMA/138/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305449 A/KITAKYUSYU/3/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305445 A/KANAGAWA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305439 A/TOCHIGI/105/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305438 A/GUNMA/30/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305365 A/Incheon/2434/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305364 A/Gyeongnam/3110/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305362 A/Gyeonggi/2623/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305360 A/Chungbuk/2826/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305358 A/HIROSHIMA/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305356 A/NIIGATA/1563/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI305352 A/KOBE/435/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304621 A/Karaj/5685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304619 A/Ulaanbaatar/190/2011 (A/H1N1) segment 4 (HA) 27.0 6.09658
EPI304609 A/Karaj/5718/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304607 A/Tehran/5675/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304467 A/Norway/1278/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304465 A/Norway/331/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304461 A/Norway/324/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304457 A/Norway/231/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304456 A/Norway/156/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI304455 A/Norway/133/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302492 A/Vaxjo/2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302487 A/Halmstad/1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302426 A/VICTORIA/663/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302420 A/VICTORIA/502/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302409 A/VICTORIA/1026/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302386 A/TOWNSVILLE/72/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302364 A/SYDNEY/31/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302358 A/PERTH/219/2010 (A/H1N1) segment 4 (HA) 27.0 6.09658
EPI302356 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302348 A/DARWIN/178/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302345 A/BRUNEI/237/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302344 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302164 A/Connecticut/0/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302162 A/Maine/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302160 A/Missouri/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302158 A/Iowa/18/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302155 A/Rhode Island/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302149 A/Kansas/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302146 A/Minnesota/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302140 A/Delaware/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302137 A/Hong Kong/6931/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302134 A/Oregon/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302129 A/Arkansas/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302123 A/Alaska/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302121 A/Suriname/82/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302119 A/Suriname/77/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302117 A/Japan/8736/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302115 A/Japan/8153/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302105 A/Indiana/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302103 A/Kentucky/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302101 A/Georgia/21/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI302094 A/Kentucky/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301934 A/Nordrhein-Westfalen/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301932 A/Nordrhein-Westfalen/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301930 A/Nordrhein-Westfalen/12/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301928 A/Nordrhein-Westfalen/11/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301926 A/Madagascar/7519/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301924 A/Madagascar/7473/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301922 A/Latvia/12-42162/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301908 A/England/143/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301906 A/Egypt/96/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301904 A/Egypt/104/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301902 A/Berlin/12/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301900 A/Baden-Wurttemberg/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301876 A/India/Delhi/ND210/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301875 A/India/Delhi/ND221/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301868 A/India/Delhi/ND314/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301845 A/Melilla/RR7085/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301842 A/PaisVasco/RR7060/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301832 A/CastillaLaMancha/RR7050/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301828 A/CastillaLaMancha/RR6918/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301827 A/Madrid/RR6998/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301823 A/LaRioja/RR6970/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301819 A/Madrid/RR6981/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301817 A/Madrid/SO8210/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301809 A/Andalucia/RR6901/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301802 A/Madrid/RR6872/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301801 A/Madrid/SO8034/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301725 A/Delaware/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301719 A/Texas/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301713 A/Hawaii/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301710 A/Oklahoma/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301704 A/Kenya/2708/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301683 A/North Carolina/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301674 A/Florida/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301444 A/Luxembourg/542/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301443 A/Luxembourg/521/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301442 A/Luxembourg/519/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301441 A/Luxembourg/511/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301440 A/Luxembourg/498/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301439 A/Valladolid/53/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301437 A/Tehran/5858/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301435 A/Tehran/5652/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301425 A/Madrid/SO8034/10 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301421 A/La Reunion/823/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301419 A/La Reunion/815/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301417 A/La Reunion/803/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301409 A/England/151/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301407 A/England/142/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301405 A/England/127/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301403 A/England/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI301132 A/NIIGATA/1581/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI300983 A/Kentucky/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI300975 A/Utah/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI300972 A/Kentucky/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI298421 A/Karaj/5327/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI297191 A/Sendai/TU617/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI296641 A/Thailand/SN_0116/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295760 A/England/5040499/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295759 A/England/280/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295758 A/England/4940476/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295757 A/England/4920303/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295756 A/England/4880378/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295755 A/England/142/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295754 A/England/4640543/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295749 A/England/5000135/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295748 A/England/5000125/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295747 A/England/4980078/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295746 A/England/4980074/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295745 A/England/4960201/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295744 A/England/4940126/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295743 A/England/4860049/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295742 A/England/4840022/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295739 A/England/126/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295736 A/England/107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295735 A/England/117/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295734 A/England/106/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295726 A/England/86/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295513 A/Thailand/742/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295498 A/Wisconsin/10/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295495 A/Thailand/594/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295417 A/Wisconsin/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295411 A/Arizona/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294674 A/England/4880374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294306 A/PERTH/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI284010 A/Thailand/34-9937/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI284007 A/Thailand/34-9912/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI255118 A/swine/Thailand/CU-RA75/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658

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www.twitter.com/hniman

A/Kenya/059/2010 has S188N.

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www.twitter.com/hniman

S188N pedigree at GISAID

EPI307146 A/Kenya/059/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI297128 A/Sendai/TU438/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI295740 A/England/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI283319 A/swine/Saitama/1/2004 (A/H1N2) segment 4 (HA) 27.0 6.09658
EPI283318 A/swine/Saitama/27/2003 (A/H1N2) segment 4 (HA) 27.0 6.09658
EPI283317 A/swine/Saitama/1/2005 (A/H1N2) segment 4 (HA) 27.0 6.09658
EPI281795 A/Texas/AF2645/2010 (A/H1N1) segment 4 (HA) 27.0 6.09658
EPI281794 A/Texas/AF2644/2010 (A/H1N1) segment 4 (HA) 27.0 6.09658
EPI278219 A/Korea/AF2429/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI278126 A/Moldova/599/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI278102 A/Moldova/226/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI276234 A/Alabama/AF2067/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI273908 A/Kenya/922/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI256174 A/Guangdong-Futian/SWL1485/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI255600 A/swine/Hong Kong/1479/2009 (A/H1N2) segment 4 (HA) 27.0 6.09658
EPI255339 A/swine/Hong Kong/NS1810/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI254496 A/Bilthoven/4360903023/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI253082 A/Texas/JMS414/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI252962 A/Texas/JMS395/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI252954 A/Texas/JMS394/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI246228 A/Thessaloniki/228/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI246218 A/Kavala/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI243792 A/Maine/15/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI240725 A/Milan/433/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI236478 A/ENG/677/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI231439 A/Washington/59/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI230273 A/HunanKaifu/SWL4142/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI224336 A/Brownsville/39H/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI224328 A/Brownsville/39OS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI224192 A/Houston/17OS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI224184 A/Houston/16OS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI223640 A/Texas/45132788/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI223608 A/Texas/45113882/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI223552 A/Texas/45122282/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI223520 A/Texas/45130742/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI223504 A/Texas/45120922/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI217141 A/South Carolina/31/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI217094 A/South Carolina/16/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI213103 A/Niigata/700/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI212164 A/Catalonia/S1369/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI212015 A/Catalonia/S1187/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI190190 A/swine/Tianjin/1/2004 (A/H1N2) segment 4 (HA) 27.0 6.09658
EPI188919 A/New York/3502/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI184971 A/Utsunomiya/2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI184246 A/Utsunomiya/1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.09658
EPI177605 A/swine/Hong Kong/554/2003 (A/H1N2) segment 4 (HA) 27.0 6.09658

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S188N at Genbank

Sequences producing significant alignments: Accession Description Max score Total score Query coverage E value Max ident Links
CY086837.1 Influenza A virus (A/swine/Hong Kong/NS894/2006(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086835.1 Influenza A virus (A/swine/Hong Kong/NS893/2006(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086833.1 Influenza A virus (A/swine/Hong Kong/NS892/2006(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086769.1 Influenza A virus (A/swine/Hong Kong/21/2005(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086741.1 Influenza A virus (A/swine/Hong Kong/1437/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086739.1 Influenza A virus (A/swine/Hong Kong/NS917/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086737.1 Influenza A virus (A/swine/Hong Kong/NS914/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086697.1 Influenza A virus (A/swine/Hong Kong/NS238/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086695.1 Influenza A virus (A/swine/Hong Kong/NS237/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086693.1 Influenza A virus (A/swine/Hong Kong/299/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086691.1 Influenza A virus (A/swine/Hong Kong/281/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086689.1 Influenza A virus (A/swine/Hong Kong/NS153/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086665.1 Influenza A virus (A/swine/Hong Kong/1802/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086663.1 Influenza A virus (A/swine/Hong Kong/1801/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086659.1 Influenza A virus (A/swine/Hong Kong/1777/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086657.1 Influenza A virus (A/swine/Hong Kong/1772/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086655.1 Influenza A virus (A/swine/Hong Kong/1760/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086653.1 Influenza A virus (A/swine/Hong Kong/1755/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086651.1 Influenza A virus (A/swine/Hong Kong/1754/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086647.1 Influenza A virus (A/swine/Hong Kong/NS1196/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086645.1 Influenza A virus (A/swine/Hong Kong/1738/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086639.1 Influenza A virus (A/swine/Hong Kong/1696/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086635.1 Influenza A virus (A/swine/Hong Kong/1680/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086633.1 Influenza A virus (A/swine/Hong Kong/1678/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086619.1 Influenza A virus (A/swine/Hong Kong/NS1115/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086611.1 Influenza A virus (A/swine/Hong Kong/1462/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086609.1 Influenza A virus (A/swine/Hong Kong/NS984/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086607.1 Influenza A virus (A/swine/Hong Kong/NS978/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086605.1 Influenza A virus (A/swine/Hong Kong/NS977/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086555.1 Influenza A virus (A/swine/Hong Kong/NS563/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086553.1 Influenza A virus (A/swine/Hong Kong/NS562/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086549.1 Influenza A virus (A/swine/Hong Kong/556/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086547.1 Influenza A virus (A/swine/Hong Kong/NS392/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY085678.1 Influenza A virus (A/swine/Hong Kong/NS915/2004(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085638.1 Influenza A virus (A/swine/Hong Kong/NS246/2004(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085630.1 Influenza A virus (A/swine/Hong Kong/NS157/2004(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085614.1 Influenza A virus (A/swine/Hong Kong/1763/2003(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085598.1 Influenza A virus (A/swine/Hong Kong/1382/2003(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085582.1 Influenza A virus (A/swine/Hong Kong/1102/2003(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY085574.1 Influenza A virus (A/swine/Hong Kong/NS605/2003(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
AB558333.1 Influenza A virus (A/Sendai/TU438/2009(H1N1)) HA gene for hemagglutinin, complete cds 28.2 28.2 100% 1.4 100%
AB548862.1 Influenza A virus (A/swine/Saitama/1/2004(H1N2)) HA gene for hemagglutinin, partial cds 28.2 28.2 100% 1.4 100%
AB548861.1 Influenza A virus (A/swine/Saitama/27/2003(H1N2)) HA gene for hemagglutinin, partial cds 28.2 28.2 100% 1.4 100%
AB548746.1 Influenza A virus (A/swine/Saitama/1/2005(H1N2)) HA gene for hemagglutinin, partial cds 28.2 28.2 100% 1.4 100%
CY072186.1 Influenza A virus (A/Texas/AF2645/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY072185.1 Influenza A virus (A/Texas/AF2644/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY071924.1 Influenza A virus (A/Korea/AF2429/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY069730.1 Influenza A virus (A/Alabama/AF2067/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY061757.1 Influenza A virus (A/swine/Hong Kong/NS1810/2009(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY061661.1 Influenza A virus (A/swine/Hong Kong/1479/2009(H1N2)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY061195.1 Influenza A virus (A/Texas/JMS414/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY061075.1 Influenza A virus (A/Texas/JMS395/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY061067.1 Influenza A virus (A/Texas/JMS394/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY056307.1 Influenza A virus(A/Thessaloniki/228/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY056304.1 Influenza A virus(A/Kavala/219/2010(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
GU451276.1 Influenza A virus (A/Milan/433/2009(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
GU371270.1 Influenza A virus (A/Hunan Kaifu/SWL4142/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY053277.1 Influenza A virus (A/Brownsville/39H/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY053269.1 Influenza A virus (A/Brownsville/39OS/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY053119.1 Influenza A virus (A/Houston/17OS/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY053111.1 Influenza A virus (A/Houston/16OS/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY052567.1 Influenza A virus (A/Texas/45132788/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY052535.1 Influenza A virus (A/Texas/45113882/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY052479.1 Influenza A virus (A/Texas/45122282/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY052447.1 Influenza A virus (A/Texas/45130742/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY052431.1 Influenza A virus (A/Texas/45120922/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY049024.1 Influenza A virus (A/Catalonia/S1369/2009(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
CY047188.1 Influenza A virus (A/Catalonia/S1187/2009(H1N1)) segment 4 sequence 28.2 28.2 100% 1.4 100%
GU014764.1 Influenza A virus (A/Niigata/700/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
GQ405861.1 Influenza A virus (A/swine/Tianjin/1/2004(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY043235.1 Influenza A virus (A/New York/3502/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
GQ365455.1 Influenza A virus (A/Utsunomiya/2/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
GQ334355.1 Influenza A virus (A/Utsunomiya/1/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
GQ229317.1 Influenza A virus (A/swine/Hong Kong/554/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100%

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