Rhiza Labs FluTracker Forum

Hong Kong has released a large set of full sequences (all 8 gene segments) from H1N1 swine in Hong Kong between 1993 and 2009. In some cases only partials were released (HA and NA).

_________________
www.twitter.com/hniman

gb|CY086006.1| Influenza A virus (A/swine/Hong Kong/NS266/200... 28.2 1.4
gb|CY086457.1| Influenza A virus (A/swine/Hong Kong/1821/2008... 26.3 5.5
gb|CY086455.1| Influenza A virus (A/swine/Hong Kong/1815/2008... 26.3 5.5
gb|CY086453.1| Influenza A virus (A/swine/Hong Kong/1813/2008... 26.3 5.5
gb|CY086451.1| Influenza A virus (A/swine/Hong Kong/1810/2008... 26.3 5.5
gb|CY086449.1| Influenza A virus (A/swine/Hong Kong/1785/2008... 26.3 5.5
gb|CY086447.1| Influenza A virus (A/swine/Hong Kong/1783/2008... 26.3 5.5
gb|CY086445.1| Influenza A virus (A/swine/Hong Kong/NS1195/20... 26.3 5.5
gb|CY086871.1| Influenza A virus (A/swine/Hong Kong/1758/2007... 26.3 5.5
gb|CY086869.1| Influenza A virus (A/swine/Hong Kong/NS1124/20... 26.3 5.5
gb|CY086863.1| Influenza A virus (A/swine/Hong Kong/NS628/200... 26.3 5.5
gb|CY086857.1| Influenza A virus (A/swine/Hong Kong/187/2007(... 26.3 5.5
gb|CY086855.1| Influenza A virus (A/swine/Hong Kong/153/2007(... 26.3 5.5
gb|CY086853.1| Influenza A virus (A/swine/Hong Kong/NS133/200... 26.3 5.5
gb|CY086851.1| Influenza A virus (A/swine/Hong Kong/NS123/200... 26.3 5.5
gb|CY086849.1| Influenza A virus (A/swine/Hong Kong/NS116/200... 26.3 5.5
gb|CY086847.1| Influenza A virus (A/swine/Hong Kong/NS26/2007... 26.3 5.5
gb|CY086845.1| Influenza A virus (A/swine/Hong Kong/1739/2006... 26.3 5.5
gb|CY086843.1| Influenza A virus (A/swine/Hong Kong/1726/2006... 26.3 5.5
gb|CY086841.1| Influenza A virus (A/swine/Hong Kong/1725/2006... 26.3 5.5
gb|CY086831.1| Influenza A virus (A/swine/Hong Kong/1245/2006... 26.3 5.5
gb|CY086829.1| Influenza A virus (A/swine/Hong Kong/870/2006(... 26.3 5.5
gb|CY086825.1| Influenza A virus (A/swine/Hong Kong/533/2006(... 26.3 5.5
gb|CY086821.1| Influenza A virus (A/swine/Hong Kong/68/2006(H... 26.3 5.5
gb|CY086817.1| Influenza A virus (A/swine/Hong Kong/1746/2005... 26.3 5.5
gb|CY086815.1| Influenza A virus (A/swine/Hong Kong/1698/2005... 26.3 5.5
gb|CY086813.1| Influenza A virus (A/swine/Hong Kong/1680/2005... 26.3 5.5
gb|CY086811.1| Influenza A virus (A/swine/Hong Kong/1674/2005... 26.3 5.5
gb|CY086809.1| Influenza A virus (A/swine/Hong Kong/1463/2005... 26.3 5.5
gb|CY086807.1| Influenza A virus (A/swine/Hong Kong/1462/2005... 26.3 5.5
gb|CY086797.1| Influenza A virus (A/swine/Hong Kong/577/2005(... 26.3 5.5
gb|CY086789.1| Influenza A virus (A/swine/Hong Kong/289/2005(... 26.3 5.5
gb|CY086787.1| Influenza A virus (A/swine/Hong Kong/283/2005(... 26.3 5.5
gb|CY086785.1| Influenza A virus (A/swine/Hong Kong/NS170/200... 26.3 5.5
gb|CY086781.1| Influenza A virus (A/swine/Hong Kong/116/2005(... 26.3 5.5
gb|CY086779.1| Influenza A virus (A/swine/Hong Kong/NS78/2005... 26.3 5.5
gb|CY086777.1| Influenza A virus (A/swine/Hong Kong/NS77/2005... 26.3 5.5
gb|CY086775.1| Influenza A virus (A/swine/Hong Kong/NS70/2005... 26.3 5.5
gb|CY086773.1| Influenza A virus (A/swine/Hong Kong/NS63/2005... 26.3 5.5
gb|CY086771.1| Influenza A virus (A/swine/Hong Kong/NS62/2005... 26.3 5.5
gb|CY086767.1| Influenza A virus (A/swine/Hong Kong/1778/2004... 26.3 5.5
gb|CY086765.1| Influenza A virus (A/swine/Hong Kong/1751/2004... 26.3 5.5
gb|CY086761.1| Influenza A virus (A/swine/Hong Kong/NS1168/20... 26.3 5.5
gb|CY086759.1| Influenza A virus (A/swine/Hong Kong/NS1164/20... 26.3 5.5
gb|CY086757.1| Influenza A virus (A/swine/Hong Kong/NS1163/20... 26.3 5.5
gb|CY086755.1| Influenza A virus (A/swine/Hong Kong/NS1162/20... 26.3 5.5
gb|CY086753.1| Influenza A virus (A/swine/Hong Kong/NS1161/20... 26.3 5.5
gb|CY086751.1| Influenza A virus (A/swine/Hong Kong/NS1160/20... 26.3 5.5
gb|CY086749.1| Influenza A virus (A/swine/Hong Kong/NS1157/20... 26.3 5.5
gb|CY086735.1| Influenza A virus (A/swine/Hong Kong/1354/2004... 26.3 5.5
gb|CY086717.1| Influenza A virus (A/swine/Hong Kong/NS322/200... 26.3 5.5
gb|CY086715.1| Influenza A virus (A/swine/Hong Kong/447/2004(... 26.3 5.5
gb|CY086713.1| Influenza A virus (A/swine/Hong Kong/440/2004(... 26.3 5.5
gb|CY086711.1| Influenza A virus (A/swine/Hong Kong/433/2004(... 26.3 5.5
gb|CY086709.1| Influenza A virus (A/swine/Hong Kong/430/2004(... 26.3 5.5
gb|CY086707.1| Influenza A virus (A/swine/Hong Kong/428/2004(... 26.3 5.5
gb|CY086705.1| Influenza A virus (A/swine/Hong Kong/423/2004(... 26.3 5.5
gb|CY086703.1| Influenza A virus (A/swine/Hong Kong/407/2004(... 26.3 5.5
gb|CY086701.1| Influenza A virus (A/swine/Hong Kong/400/2004(... 26.3 5.5
gb|CY086699.1| Influenza A virus (A/swine/Hong Kong/388/2004(... 26.3 5.5
gb|CY086687.1| Influenza A virus (A/swine/Hong Kong/NS67/2004... 26.3 5.5
gb|CY086661.1| Influenza A virus (A/swine/Hong Kong/1797/2003... 26.3 5.5
gb|CY086649.1| Influenza A virus (A/swine/Hong Kong/1751/2003... 26.3 5.5
gb|CY086643.1| Influenza A virus (A/swine/Hong Kong/1737/2003... 26.3 5.5
gb|CY086641.1| Influenza A virus (A/swine/Hong Kong/1708/2003... 26.3 5.5
gb|CY086637.1| Influenza A virus (A/swine/Hong Kong/1694/2003... 26.3 5.5
gb|CY086631.1| Influenza A virus (A/swine/Hong Kong/1676/2003... 26.3 5.5
gb|CY086629.1| Influenza A virus (A/swine/Hong Kong/NS1147/20... 26.3 5.5
gb|CY086627.1| Influenza A virus (A/swine/Hong Kong/NS1146/20... 26.3 5.5
gb|CY086625.1| Influenza A virus (A/swine/Hong Kong/NS1143/20... 26.3 5.5
gb|CY086623.1| Influenza A virus (A/swine/Hong Kong/NS1119/20... 26.3 5.5
gb|CY086621.1| Influenza A virus (A/swine/Hong Kong/NS1117/20... 26.3 5.5
gb|CY086617.1| Influenza A virus (A/swine/Hong Kong/1602/2003... 26.3 5.5
gb|CY086597.1| Influenza A virus (A/swine/Hong Kong/1213/2003... 26.3 5.5
gb|CY086595.1| Influenza A virus (A/swine/Hong Kong/1190/2003... 26.3 5.5
gb|CY086593.1| Influenza A virus (A/swine/Hong Kong/1186/2003... 26.3 5.5
gb|CY086587.1| Influenza A virus (A/swine/Hong Kong/901/2003(... 26.3 5.5
gb|CY086585.1| Influenza A virus (A/swine/Hong Kong/886/2003(... 26.3 5.5
gb|CY086583.1| Influenza A virus (A/swine/Hong Kong/882/2003(... 26.3 5.5
gb|CY086581.1| Influenza A virus (A/swine/Hong Kong/881/2003(... 26.3 5.5
gb|CY086579.1| Influenza A virus (A/swine/Hong Kong/873/2003(... 26.3 5.5
gb|CY086577.1| Influenza A virus (A/swine/Hong Kong/856/2003(... 26.3 5.5
gb|CY086575.1| Influenza A virus (A/swine/Hong Kong/849/2003(... 26.3 5.5
gb|CY086573.1| Influenza A virus (A/swine/Hong Kong/848/2003(... 26.3 5.5
gb|CY086571.1| Influenza A virus (A/swine/Hong Kong/847/2003(... 26.3 5.5
gb|CY086569.1| Influenza A virus (A/swine/Hong Kong/NS596/200... 26.3 5.5
gb|CY086567.1| Influenza A virus (A/swine/Hong Kong/NS595/200... 26.3 5.5
gb|CY086565.1| Influenza A virus (A/swine/Hong Kong/NS591/200... 26.3 5.5
gb|CY086563.1| Influenza A virus (A/swine/Hong Kong/NS587/200... 26.3 5.5
gb|CY086561.1| Influenza A virus (A/swine/Hong Kong/NS581/200... 26.3 5.5
gb|CY086559.1| Influenza A virus (A/swine/Hong Kong/NS579/200... 26.3 5.5
gb|CY086557.1| Influenza A virus (A/swine/Hong Kong/NS578/200... 26.3 5.5
gb|CY086551.1| Influenza A virus (A/swine/Hong Kong/567/2003(... 26.3 5.5
gb|CY086545.1| Influenza A virus (A/swine/Hong Kong/294/2003(... 26.3 5.5
gb|CY086539.1| Influenza A virus (A/swine/Hong Kong/266/2003(... 26.3 5.5
gb|CY086537.1| Influenza A virus (A/swine/Hong Kong/253/2003(... 26.3 5.5
gb|CY086531.1| Influenza A virus (A/swine/Hong Kong/NS177/200... 26.3 5.5
gb|CY086529.1| Influenza A virus (A/swine/Hong Kong/NS172/200... 26.3 5.5
gb|CY086527.1| Influenza A virus (A/swine/Hong Kong/NS164/200... 26.3 5.5
gb|CY086525.1| Influenza A virus (A/swine/Hong Kong/NS162/200... 26.3 5.5
gb|CY086523.1| Influenza A virus (A/swine/Hong Kong/NS160/200... 26.3 5.5
gb|CY086521.1| Influenza A virus (A/swine/Hong Kong/NS152/200... 26.3 5.5
gb|CY086519.1| Influenza A virus (A/swine/Hong Kong/198/2003(... 26.3 5.5
gb|CY086517.1| Influenza A virus (A/swine/Hong Kong/NS111/200... 26.3 5.5
gb|CY086515.1| Influenza A virus (A/swine/Hong Kong/142/2003(... 26.3 5.5
gb|CY086513.1| Influenza A virus (A/swine/Hong Kong/54/2003(H... 26.3 5.5
gb|CY086511.1| Influenza A virus (A/swine/Hong Kong/19/2003(H... 26.3 5.5
gb|CY086509.1| Influenza A virus (A/swine/Hong Kong/3/2003(H1... 26.3 5.5
gb|CY086503.1| Influenza A virus (A/swine/Hong Kong/1792/2002... 26.3 5.5
gb|CY086431.1| Influenza A virus (A/swine/Hong Kong/NS55/2002... 26.3 5.5
gb|CY086379.1| Influenza A virus (A/swine/Hong Kong/9474/2001... 26.3 5.5
gb|CY086377.1| Influenza A virus (A/swine/Hong Kong/9473/2001... 26.3 5.5
gb|CY086375.1| Influenza A virus (A/swine/Hong Kong/9457/2001... 26.3 5.5
gb|CY086373.1| Influenza A virus (A/swine/Hong Kong/9449/2001... 26.3 5.5
gb|CY086371.1| Influenza A virus (A/swine/Hong Kong/9446/2001... 26.3 5.5
gb|CY086369.1| Influenza A virus (A/swine/Hong Kong/9419/2001... 26.3 5.5
gb|CY086367.1| Influenza A virus (A/swine/Hong Kong/9418/2001... 26.3 5.5
gb|CY086365.1| Influenza A virus (A/swine/Hong Kong/NS1213/20... 26.3 5.5
gb|CY086363.1| Influenza A virus (A/swine/Hong Kong/NS1199/20... 26.3 5.5
gb|CY086357.1| Influenza A virus (A/swine/Hong Kong/9301/2001... 26.3 5.5
gb|CY086355.1| Influenza A virus (A/swine/Hong Kong/9289/2001... 26.3 5.5
gb|CY085974.1| Influenza A virus (A/swine/Hong Kong/NS184/200... 26.3 5.5
gb|CY085966.1| Influenza A virus (A/swine/Hong Kong/NS152/200... 26.3 5.5
gb|CY085958.1| Influenza A virus (A/swine/Hong Kong/255/2009(... 26.3 5.5
gb|CY085950.1| Influenza A virus (A/swine/Hong Kong/248/2009(... 26.3 5.5
gb|CY085934.1| Influenza A virus (A/swine/Hong Kong/245/2009(... 26.3 5.5
gb|CY085926.1| Influenza A virus (A/swine/Hong Kong/243/2009(... 26.3 5.5
gb|CY085918.1| Influenza A virus (A/swine/Hong Kong/199/2009(... 26.3 5.5
gb|CY085902.1| Influenza A virus (A/swine/Hong Kong/72/2009(H... 26.3 5.5
gb|CY085894.1| Influenza A virus (A/swine/Hong Kong/71/2009(H... 26.3 5.5
gb|CY085886.1| Influenza A virus (A/swine/Hong Kong/1780/2008... 26.3 5.5
gb|CY085870.1| Influenza A virus (A/swine/Hong Kong/NS952/200... 26.3 5.5
gb|CY085862.1| Influenza A virus (A/swine/Hong Kong/715/2008(... 26.3 5.5
gb|CY085854.1| Influenza A virus (A/swine/Hong Kong/676/2008(... 26.3 5.5
gb|CY085846.1| Influenza A virus (A/swine/Hong Kong/61/2008(H... 26.3 5.5
gb|CY085830.1| Influenza A virus (A/swine/Hong Kong/435/2007(... 26.3 5.5
gb|CY085822.1| Influenza A virus (A/swine/Hong Kong/NS120/200... 26.3 5.5
gb|CY085814.1| Influenza A virus (A/swine/Hong Kong/72/2007(H... 26.3 5.5
gb|CY085806.1| Influenza A virus (A/swine/Hong Kong/1791/2006... 26.3 5.5
gb|CY085798.1| Influenza A virus (A/swine/Hong Kong/1716/2006... 26.3 5.5
gb|CY085790.1| Influenza A virus (A/swine/Hong Kong/1323/2006... 26.3 5.5
gb|CY085782.1| Influenza A virus (A/swine/Hong Kong/NS376/200... 26.3 5.5
gb|CY085774.1| Influenza A virus (A/swine/Hong Kong/434/2006(... 26.3 5.5
gb|CY085758.1| Influenza A virus (A/swine/Hong Kong/170/2006(... 26.3 5.5
gb|CY085742.1| Influenza A virus (A/swine/Hong Kong/1683/2005... 26.3 5.5
gb|CY085726.1| Influenza A virus (A/swine/Hong Kong/404/2005(... 26.3 5.5
gb|CY085718.1| Influenza A virus (A/swine/Hong Kong/NS210/200... 26.3 5.5
gb|CY085710.1| Influenza A virus (A/swine/Hong Kong/NS74/2005... 26.3 5.5
gb|CY085702.1| Influenza A virus (A/swine/Hong Kong/275/2005(... 26.3 5.5
gb|CY085694.1| Influenza A virus (A/swine/Hong Kong/51/2005(H... 26.3 5.5
gb|CY085686.1| Influenza A virus (A/swine/Hong Kong/NS1170/20... 26.3 5.5
gb|CY085654.1| Influenza A virus (A/swine/Hong Kong/NS318/200... 26.3 5.5
gb|CY085646.1| Influenza A virus (A/swine/Hong Kong/424/2004(... 26.3 5.5
gb|CY085566.1| Influenza A virus (A/swine/Hong Kong/841/2003(... 26.3 5.5
gb|CY085558.1| Influenza A virus (A/swine/Hong Kong/638/2003(... 26.3 5.5
gb|CY085550.1| Influenza A virus (A/swine/Hong Kong/NS129/200... 26.3 5.5
gb|CY085534.1| Influenza A virus (A/swine/Hong Kong/1669/2002... 26.3 5.5

_________________
www.twitter.com/hniman

LOCUS CY086006 1708 bp cRNA linear VRL 02-MAR-2011
DEFINITION Influenza A virus (A/swine/Hong Kong/NS266/2009(H1N1))
hemagglutinin (HA) gene, complete cds.
ACCESSION CY086006
VERSION CY086006.1 GI:325057558
KEYWORDS .
SOURCE Influenza A virus (A/swine/Hong Kong/NS266/2009(H1N1))
ORGANISM Influenza A virus (A/swine/Hong Kong/NS266/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1708)
AUTHORS Vijaykrishna,D., Smith,G., Poon,L., Cheung,C., Chen,H., Guan,Y. and
Peiris,J.
TITLE Long-term evolution and transmission dynamics of swine influenza A
virus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1708)
AUTHORS Vijaykrishna,D., Smith,G., Poon,L., Cheung,C., Chen,H., Guan,Y. and
Peiris,J.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2011) Department of Microbiology, The University
of Hong Kong, State Key Laboratory of Emerging Infectious Disease,
Li Ka Shing Faculty of Medicine, Pokfulam, Hong Kong, Hong Kong
FEATURES Location/Qualifiers
source 1..1708
/organism="Influenza A virus (A/swine/Hong
Kong/NS266/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/swine/Hong Kong/NS266/2009"
/serotype="H1N1"
/isolation_source="nasal swab"
/host="swine"
/db_xref="taxon:991191"
/segment="4"
/country="Hong Kong"
/collection_date="19-Mar-2009"
misc_feature 1..1708
/db_xref="IRD:CEIRS-SJC002-SKLEID_FG_183.4"
gene 5..1705
/gene="HA"
CDS 5..1705
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADY71787.1"
/db_xref="GI:325057559"
/translation="MEAKLFVLFCTFTALKADTICVGYHANNSTDTVDTILEKNVTVT
HSVNLLENSHNGKLCSLNGKIPLQLGNCNVAGWILGNPKCDLLLTANSWSYIIETSNS
KDGACYPGEFADYEELKEQLSTVSSFERFEIFPKATSWPNHDTTRGTTVACSHSGANS
FYRNLLWIIKKGNSYPKLSKSYTNNKGKEVLVIWGVHHPPTDSDQQTLYQNNNTYVTV
GSSKYYKRFTPEIVARPKVREQAGRMNYYWTLLDQGDTITFEATGNLIAPWHAFALEK
GSGSGIMMSDAQIHNCTTKCQTPHGALKSNLPFQNVHPVTIGECPKYVKSTQLRMATG
LRNIPSIQSRGLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQIAIDGI
SNKVNSVIEKMNIQFTSVGKEFNSLEKRMENLNKKVDDGFLDVWTYNAELLILLENER
TLDFHDLNVKNLYEKVKSQLRNNAKEIGNGCFEFYHKCDNECMESVKNGTYNYPKYSE
ESKLNREKIDGVKLESMGIHQILAIYSTVASSLVLLVSLGAISFWMCSNGSLQCRVCI
"
sig_peptide 5..55
/gene="HA"
mat_peptide 56..1036
/gene="HA"
/product="HA1"
mat_peptide 1037..1702
/gene="HA"
/product="HA2"
ORIGIN
1 caaaatggaa gcaaaactgt ttgtattatt ctgtacattc actgcactga aagctgacac
61 catttgtgta ggctatcatg ctaacaattc cacagacact gtcgacacaa tactggagaa
121 aaatgtgact gttacccatt cagttaattt actggaaaac agccataatg gaaaactctg
181 cagcctgaat ggaaagatcc ccttacaact ggggaactgc aacgtagcag gatggatcct
241 tggcaaccca aaatgtgact tgctgctcac agcgaattcg tggtcttaca taatagagac
301 ttcaaattca aaagatggag catgctaccc cggagaattc gctgattatg aagaattaaa
361 ggagcagctg agtacagttt cttcatttga aagatttgaa attttcccaa aggcaacctc
421 atggccaaac catgatacaa ccagaggtac tacagttgca tgctcccact ctggagccaa
481 cagtttttat cggaatttac tatggataat aaagaaagga aactcctatc ctaagctcag
541 caagtcatac acaaacaata agggaaagga agtgcttgta atttggggag tgcaccaccc
601 tccgaccgac agtgaccaac aaaccctcta ccagaataat aatacatatg ttacagttgg
661 atcatcaaaa tactacaaaa ggttcacacc agaaatagta gcaagaccta aagtcagaga
721 acaagcaggc agaatgaatt attactggac attgttagat caaggggaca ccataacttt
781 tgaagccact gggaatttaa tagcaccatg gcacgcattt gcattggaaa aaggctctgg
841 ttctggaatt atgatgtcgg atgctcagat tcacaattgc actacaaagt gccaaactcc
901 ccatggggcc ttgaaaagca atcttccttt tcagaatgta catcccgtca ctattggaga
961 atgccccaaa tatgttaaaa gcacccaact gagaatggca acaggattaa ggaatatccc
1021 ctctattcaa tccagaggac ttttcggggc aattgccgga ttcattgaag gaggatggac
1081 aggaatgata gacggatggt acggatatca ccatcaaaat gagcagggct ctggttatgc
1141 agcagatcag aaaagcacac aaatcgcaat tgatgggatc agcaacaaag tgaattcagt
1201 aattgaaaaa atgaacattc aatttacttc agtgggcaag gagttcaata gtctagagaa
1261 aaggatggaa aatttgaata agaaggttga tgatgggttt ttggatgtat ggacatataa
1321 cgctgagttg ctcattttac tcgagaatga aaggactcta gatttccatg accttaacgt
1381 aaaaaattta tatgaaaagg tcaaatcaca actgaggaac aatgccaagg aaatcggaaa
1441 tggctgcttt gagttctatc acaaatgtga taatgagtgc atggaaagcg taaagaatgg
1501 cacatacaat tatcccaaat attcagaaga atccaagtta aatagggaga aaatagatgg
1561 tgtgaaacta gaatcaatgg gaattcacca gattttggcg atctactcca cagtcgccag
1621 ttccctggtc ttattagtct ccctgggggc aatcagcttc tggatgtgtt ctaatgggtc
1681 attgcaatgc agagtatgca tttaagac

_________________
www.twitter.com/hniman

Number of sequences released extend beyond above list and include H1N2, although many are partials and only include HA and NA.

_________________
www.twitter.com/hniman

Series includes sequences with G158E, S186P, and D225G.

_________________
www.twitter.com/hniman

Collections go back to 2000 and include sequences with D225E and D225N.

_________________
www.twitter.com/hniman

Here is a longer list of HA sequences

CY086867.1 Influenza A virus (A/swine/Hong Kong/NS856/2007(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 48.6 100% 1.4 100%
CY086827.1 Influenza A virus (A/swine/Hong Kong/823/2006(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 48.6 100% 1.4 100%
CY086805.1 Influenza A virus (A/swine/Hong Kong/1447/2005(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086783.1 Influenza A virus (A/swine/Hong Kong/145/2005(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086747.1 Influenza A virus (A/swine/Hong Kong/1472/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086743.1 Influenza A virus (A/swine/Hong Kong/1441/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086723.1 Influenza A virus (A/swine/Hong Kong/1010/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086721.1 Influenza A virus (A/swine/Hong Kong/NS683/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086719.1 Influenza A virus (A/swine/Hong Kong/551/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086685.1 Influenza A virus (A/swine/Hong Kong/40/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086683.1 Influenza A virus (A/swine/Hong Kong/38/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086681.1 Influenza A virus (A/swine/Hong Kong/36/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086679.1 Influenza A virus (A/swine/Hong Kong/35/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086677.1 Influenza A virus (A/swine/Hong Kong/32/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086675.1 Influenza A virus (A/swine/Hong Kong/17/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086673.1 Influenza A virus (A/swine/Hong Kong/NS44/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086671.1 Influenza A virus (A/swine/Hong Kong/NS10/2004(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086669.1 Influenza A virus (A/swine/Hong Kong/1811/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086667.1 Influenza A virus (A/swine/Hong Kong/1809/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086589.1 Influenza A virus (A/swine/Hong Kong/NS619/2003(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086507.1 Influenza A virus (A/swine/Hong Kong/1822/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086505.1 Influenza A virus (A/swine/Hong Kong/1821/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY086499.1 Influenza A virus (A/swine/Hong Kong/1742/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086493.1 Influenza A virus (A/swine/Hong Kong/1720/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086487.1 Influenza A virus (A/swine/Hong Kong/1706/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086467.1 Influenza A virus (A/swine/Hong Kong/1068/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY086465.1 Influenza A virus (A/swine/Hong Kong/1065/2002(H1N2)) hemagglutinin (HA) gene, partial cds 28.2 48.6 100% 1.4 100%
CY085998.1 Influenza A virus (A/swine/Hong Kong/NS252/2009(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 48.6 100% 1.4 100%
CY085734.1 Influenza A virus (A/swine/Hong Kong/729/2005(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 48.6 100% 1.4 100%
CY085622.1 Influenza A virus (A/swine/Hong Kong/NS30/2004(H1N2)) hemagglutinin (HA) gene, complete cds 28.2 48.6 100% 1.4
CY086837.1 Influenza A virus (A/swine/Hong Kong/NS894/2006(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086835.1 Influenza A virus (A/swine/Hong Kong/NS893/2006(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086833.1 Influenza A virus (A/swine/Hong Kong/NS892/2006(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086473.1 Influenza A virus (A/swine/Hong Kong/1327/2002(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086399.1 Influenza A virus (A/swine/Hong Kong/NS1454/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086397.1 Influenza A virus (A/swine/Hong Kong/NS1451/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086391.1 Influenza A virus (A/swine/Hong Kong/9684/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086389.1 Influenza A virus (A/swine/Hong Kong/9667/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086387.1 Influenza A virus (A/swine/Hong Kong/9665/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086385.1 Influenza A virus (A/swine/Hong Kong/9661/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086341.1 Influenza A virus (A/swine/Hong Kong/8754/2001(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086337.1 Influenza A virus (A/swine/Hong Kong/NS861/2001(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086335.1 Influenza A virus (A/swine/Hong Kong/NS839/2001(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086333.1 Influenza A virus (A/swine/Hong Kong/NS838/2001(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086331.1 Influenza A virus (A/swine/Hong Kong/NS836/2001(H1N2)) hemagglutinin (HA) gene, partial cds 26.3 26.3 92% 5.5 100%
CY086315.1 Influenza A virus (A/swine/Hong Kong/8282/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086313.1 Influenza A virus (A/swine/Hong Kong/8279/2001(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086277.1 Influenza A virus (A/swine/Hong Kong/7041/2000(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086275.1 Influenza A virus (A/swine/Hong Kong/7017/2000(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086167.1 Influenza A virus (A/swine/Hong Kong/4865/1999(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086021.1 Influenza A virus (A/swine/Hong Kong/3070/1998(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY086019.1 Influenza A virus (A/swine/Hong Kong/2928/1998(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY085406.1 Influenza A virus (A/swine/Hong Kong/8709/2001(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085374.1 Influenza A virus (A/swine/Hong Kong/8278/2001(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085260.1 Influenza A virus (A/swine/Hong Kong/2603/1994(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 26.3 92% 5.5 100%
CY085244.1 Influenza A virus (A/swine/Hong Kong/2592/1994(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY085229.1 Influenza A virus (A/swine/Hong Kong/2518/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085215.1 Influenza A virus (A/swine/Hong Kong/2507/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085200.1 Influenza A virus (A/swine/Hong Kong/2503/1994(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY085186.1 Influenza A virus (A/swine/Hong Kong/2461/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085174.1 Influenza A virus (A/swine/Hong Kong/2445/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085165.1 Influenza A virus (A/swine/Hong Kong/2428/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085150.1 Influenza A virus (A/swine/Hong Kong/2422/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085136.1 Influenza A virus (A/swine/Hong Kong/2161/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085121.1 Influenza A virus (A/swine/Hong Kong/1937/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085113.1 Influenza A virus (A/swine/Hong Kong/1845/1994(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY085105.1 Influenza A virus (A/swine/Hong Kong/1795/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085097.1 Influenza A virus (A/swine/Hong Kong/1767/1994(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085081.1 Influenza A virus (A/swine/Hong Kong/1290/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 26.3 92% 5.5 100%
CY085073.1 Influenza A virus (A/swine/Hong Kong/1286/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 26.3 92% 5.5 100%
CY085057.1 Influenza A virus (A/swine/Hong Kong/1223/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085049.1 Influenza A virus (A/swine/Hong Kong/1219/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%
CY085017.1 Influenza A virus (A/swine/Hong Kong/172/1993(H1N1)) hemagglutinin (HA) gene, partial cds 26.3 46.6 92% 5.5 100%
CY084977.1 Influenza A virus (A/swine/Hong Kong/249/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 26.3 92% 5.5 100%
CY084969.1 Influenza A virus (A/swine/Hong Kong/158/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 26.3 92% 5.5 100%
CY084961.1 Influenza A virus (A/swine/Hong Kong/128/1993(H1N1)) hemagglutinin (HA) gene, complete cds 26.3 46.6 92% 5.5 100%

_________________
www.twitter.com/hniman

The sequences go back to 1977 and clearly indicate that "North American" swine sequence have been circulating in Hong Kong for many decades.

_________________
www.twitter.com/hniman