Rhiza Labs FluTracker Forum

The US Air Force has released a large series of recent (December, 2010 / January. 2011) sequences (at Genbank) from the US and Asia (Japan and South Korea) from cases that were previously vaccinated. All but one had S188T, S186P, or both. Similar sequences were from additional cases that were not listed as previously vaccinated, demonstrating the dominance and immunological escape of these two sub-clades in recent isolates from the northern hemisphere.

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S188T and S186P

LOCUS CY084215 1200 bp cRNA linear VRL 22-FEB-2011
DEFINITION Influenza A virus (A/Korea/AF21790/2011(H1N1)) hemagglutinin (HA)
gene, partial cds.
ACCESSION CY084215
VERSION CY084215.1 GI:323710105
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Korea/AF21790/2011(H1N1))
ORGANISM Influenza A virus (A/Korea/AF21790/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE 2010-2011 Influenza pdm A(H1N1) viruses within DoD Beneficiary
Populations
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) DoD-GEIS Flu Program, USAF School of
Aerospace Medicine, 2730 Louis Bauer Dr. Bldg 930, Brooks
City-Base, Texas 78235, USA
FEATURES Location/Qualifiers
source 1..1200
/organism="Influenza A virus (A/Korea/AF21790/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/Korea/AF21790/2011"
/serotype="H1N1"
/isolation_source="NW"
/host="human; gender F; age 27"
/db_xref="taxon:987093"
/segment="4"
/lab_host="PMK1 passage(s)"
/country="South Korea: Osan"
/collection_date="09-Jan-2011"
/note="Previously vaccinated"
gene 1..>1200
/gene="HA"
CDS 1..>1200
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADY02989.1"
/db_xref="GI:323710106"
/translation="MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKG
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPPTTADQQSLYQNADTYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKI
TNKVNSVI"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..>1200
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tatgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taatcttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaaaac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaggc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccacct
601 actactgctg accaacaaag tctctatcag aatgcagata catatgtttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggcttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt

_________________
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Several of the isolates that did not have S188T or S186P had A189T, signaling an additional RBD change linked to immunological escape.

_________________
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A189T

LOCUS CY084216 1200 bp cRNA linear VRL 22-FEB-2011
DEFINITION Influenza A virus (A/New Jersey/AF21791/2011(H1N1)) hemagglutinin
(HA) gene, partial cds.
ACCESSION CY084216
VERSION CY084216.1 GI:323710107
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/New Jersey/AF21791/2011(H1N1))
ORGANISM Influenza A virus (A/New Jersey/AF21791/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE 2010-2011 Influenza pdm A(H1N1) viruses within DoD Beneficiary
Populations
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) DoD-GEIS Flu Program, USAF School of
Aerospace Medicine, 2730 Louis Bauer Dr. Bldg 930, Brooks
City-Base, Texas 78235, USA
FEATURES Location/Qualifiers
source 1..1200
/organism="Influenza A virus (A/New
Jersey/AF21791/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/New Jersey/AF21791/2011"
/serotype="H1N1"
/isolation_source="NW"
/host="human; gender M; age 37"
/db_xref="taxon:987094"
/segment="4"
/lab_host="PMK1 passage(s)"
/country="USA: New Jersey"
/collection_date="13-Jan-2011"
/note="Previously vaccinated"
gene 1..>1200
/gene="HA"
CDS 1..>1200
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADY02990.1"
/db_xref="GI:323710108"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVDLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLNKSYINDKGKEVLVLWGIHHPSTSTDQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPIHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEI
TNKVNSVI"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..>1200
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt tgaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agctcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgaaatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcaacaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actagtactg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca
661 tctagataca gcaagaagtt taagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accaatccac gattgcaata caacctgtca gacacccaag
901 ggggctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaagtgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacagga
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac gagattacta acaaagtaaa ttctgttatt

_________________
www.twitter.com/hniman

S188T and A189T

LOCUS CY084201 1200 bp cRNA linear VRL 22-FEB-2011
DEFINITION Influenza A virus (A/North Carolina/AF21793/2010(H1N1))
hemagglutinin (HA) gene, partial cds.
ACCESSION CY084201
VERSION CY084201.1 GI:323710077
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/North Carolina/AF21793/2010(H1N1))
ORGANISM Influenza A virus (A/North Carolina/AF21793/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE 2010-2011 Influenza pdm A(H1N1) viruses within DoD Beneficiary
Populations
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1200)
AUTHORS Garner,J.L., Connors,B., Canas,L., Melendez,D., Herrera,K.,
Cormier,T., Lowman,A., Guerrero,A., Abshire,J., Smith,J.P.,
Compton,D., Lopez,C.C., Macintosh,V., Macias,E., Noe,J.C. and
Sjoberg,P.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) DoD-GEIS Flu Program, USAF School of
Aerospace Medicine, 2730 Louis Bauer Dr. Bldg 930, Brooks
City-Base, Texas 78235, USA
FEATURES Location/Qualifiers
source 1..1200
/organism="Influenza A virus (A/North
Carolina/AF21793/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/North Carolina/AF21793/2010"
/serotype="H1N1"
/isolation_source="NW"
/host="human; gender F; age 29"
/db_xref="taxon:987096"
/segment="4"
/lab_host="PMK1 passage(s)"
/country="USA: North Carolina"
/collection_date="14-Dec-2010"
gene 1..>1200
/gene="HA"
CDS 1..>1200
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADY02975.1"
/db_xref="GI:323710078"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTTTDQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKI
TNKVNSVI"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..>1200
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatca attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actactactg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacatttgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggcttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt

_________________
www.twitter.com/hniman

The isolates below were from previously vaccinated patients

S188T
A/Korea/AF21778/2010
A/Korea/AF21780/2010
A/Korea/AF21783/2010
A/Arizona/AF21768/2011
A/Japane/AF21777/2011
A/Korea/AF21784/2011
A/Korea/AF21785/2011
A/Korea/AF21786/2011
A/Korea/AF21787/2011
A/Korea/AF21788/2011
A/Korea/AF21789/2011
A/Korea/AF21790/2011

S186P
A/Korea/AF21779/2010
A/Korea/AF21781/2010
A/Korea/AF21782/2010
A/North Carolina/AF21797/2011

A189T
A/New Jersey/AF21791/2011

_________________
www.twitter.com/hniman

12 of the above sequences had S188T, including the sequence that also had S186P. 4 additional sequences had S186P. The 1 sequence without S188T or S186P had A189T.

_________________
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Commentary

http://www.recombinomics.com/News/02231 ... _Seqs.html

_________________
www.twitter.com/hniman

Additional sequences closely related to the above sequences with A189T include A/Capetown/29/2010, A/Aragon/RR6925/2010, A/Florida/AF21771/2011, A/El Salvador/798/2010, A/North Carolina/AF21791/2011, A/South Carolina/AF21803/2011, A/Arizona/AF21768/2011;

_________________
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S188T at Genbank

gb|CY084225.1| Influenza A virus (A/Ohio/AF21802/2011(H1N1)) ... 36.2 0.91
gb|CY084224.1| Influenza A virus (A/Ohio/AF21801/2011(H1N1)) ... 36.2 0.91
gb|CY084223.1| Influenza A virus (A/Ohio/AF21800/2011(H1N1)) ... 36.2 0.91
gb|CY084222.1| Influenza A virus (A/Ohio/AF21799/2011(H1N1)) ... 36.2 0.91
gb|CY084221.1| Influenza A virus (A/Ohio/AF21798/2011(H1N1)) ... 36.2 0.91
gb|CY084218.1| Influenza A virus (A/North Carolina/AF21795/20... 36.2 0.91
gb|CY084217.1| Influenza A virus (A/New Mexico/AF21792/2011(H... 36.2 0.91
gb|CY084215.1| Influenza A virus (A/Korea/AF21790/2011(H1N1))... 36.2 0.91
gb|CY084214.1| Influenza A virus (A/Korea/AF21789/2011(H1N1))... 36.2 0.91
gb|CY084213.1| Influenza A virus (A/Korea/AF21788/2011(H1N1))... 36.2 0.91
gb|CY084212.1| Influenza A virus (A/Korea/AF21787/2011(H1N1))... 36.2 0.91
gb|CY084210.1| Influenza A virus (A/Korea/AF21785/2011(H1N1))... 36.2 0.91
gb|CY084209.1| Influenza A virus (A/Korea/AF21784/2011(H1N1))... 36.2 0.91
gb|CY084208.1| Influenza A virus (A/Japane/AF21777/2011(H1N1)... 36.2 0.91
gb|CY084207.1| Influenza A virus (A/Illinois/AF21776/2011(H1N... 36.2 0.91
gb|CY084206.1| Influenza A virus (A/Florida/AF21772/2011(H1N1... 36.2 0.91
gb|CY084204.1| Influenza A virus (A/District of Columbia/AF21... 36.2 0.91
gb|CY084202.1| Influenza A virus (A/North Carolina/AF21794/20... 36.2 0.91
gb|CY084200.1| Influenza A virus (A/Korea/AF21783/2010(H1N1))... 36.2 0.91
gb|CY084195.1| Influenza A virus (A/Korea/AF21778/2010(H1N1))... 36.2 0.91
gb|CY084194.1| Influenza A virus (A/Hawaii/AF21775/2010(H1N1)... 36.2 0.91
gb|CY084191.1| Influenza A virus (A/Florida/AF21770/2010(H1N1... 36.2 0.91
gb|CY084190.1| Influenza A virus (A/Delaware/AF21764/2010(H1N... 36.2 0.91
gb|CY081591.1| Influenza A virus (A/Beijing/3907/2010(H1N1)) ... 36.2 0.91
gb|CY081586.1| Influenza A virus (A/Beijing/3884/2010(H1N1)) ... 36.2 0.91
gb|CY081580.1| Influenza A virus (A/Beijing/3872/2010(H1N1)) ... 36.2 0.91
gb|CY081222.1| Influenza A virus (A/Thailand/CU-H2364/2010(H1... 36.2 0.91
gb|CY081216.1| Influenza A virus (A/Thailand/CU-H2359/2010(H1... 36.2 0.91
gb|CY081192.1| Influenza A virus (A/Thailand/CU-H2216/2010(H1... 36.2 0.91
gb|CY081162.1| Influenza A virus (A/Thailand/CU-C1192/2010(H1... 36.2 0.91
gb|CY081156.1| Influenza A virus (A/Thailand/CU-C1157/2010(H1... 36.2 0.91
gb|CY081150.1| Influenza A virus (A/Thailand/CU-C1151/2010(H1... 36.2 0.91
gb|CY081144.1| Influenza A virus (A/Thailand/CU-C1119/2010(H1... 36.2 0.91
gb|CY081138.1| Influenza A virus (A/Thailand/CU-C1099/2010(H1... 36.2 0.91
gb|CY081132.1| Influenza A virus (A/Thailand/CU-C1070/2010(H1... 36.2 0.91
gb|CY081077.1| Influenza A virus (A/Ontario/720545/2010(H1N1)... 36.2 0.91
gb|CY081061.1| Influenza A virus (A/Ontario/130741/2010(H1N1)... 36.2 0.91
gb|HQ912713.1| Influenza A virus (A/Hangzhou/1/2011(H1N1)) se... 36.2 0.91
gb|HQ897940.1| Influenza A virus (A/Denmark/134/2010(H1N1)) s... 36.2 0.91
gb|HQ897939.1| Influenza A virus (A/Denmark/132/2010(H1N1)) s... 36.2 0.91
gb|HQ897937.1| Influenza A virus (A/Denmark/130/2010(H1N1)) s... 36.2 0.91
gb|HQ897936.1| Influenza A virus (A/Denmark/129/2010(H1N1)) s... 36.2 0.91
gb|HQ897935.1| Influenza A virus (A/Denmark/131/2010(H1N1)) s... 36.2 0.91
gb|HQ897934.1| Influenza A virus (A/Denmark/133/2010(H1N1)) s... 36.2 0.91
gb|HQ897933.1| Influenza A virus (A/Denmark/125/2010(H1N1)) s... 36.2 0.91
gb|HQ897932.1| Influenza A virus (A/Denmark/137/2010(H1N1)) s... 36.2 0.91
gb|HQ891281.1| Influenza A virus (A/Vladivistok/7/2010(H1N1))... 36.2 0.91
gb|HQ880594.1| Influenza A virus (A/Denmark/115/2010(H1N1)) s... 36.2 0.91
gb|HQ880593.1| Influenza A virus (A/Denmark/114/2010(H1N1)) s... 36.2 0.91
gb|HQ880592.1| Influenza A virus (A/Denmark/113/2010(H1N1)) s... 36.2 0.91
gb|HQ880590.1| Influenza A virus (A/Denmark/109/2010(H1N1)) s... 36.2 0.91
gb|HQ880588.1| Influenza A virus (A/Denmark/107/2010(H1N1)) s... 36.2 0.91
gb|CY080420.1| Influenza A virus (A/Ulaanbaatar/190/2011(H1N1... 36.2 0.91
gb|HQ853306.1| Influenza A virus (A/Karaj/5718/2010(H1N1)) se... 36.2 0.91
gb|HQ853305.1| Influenza A virus (A/Karaj/5685/2010(H1N1)) se... 36.2 0.91
gb|HQ853302.1| Influenza A virus (A/Tehran/5675/2010(H1N1)) s... 36.2 0.91
gb|HQ834746.1| Influenza A virus (A/Moscow/IIV-33/2010(H1N1))... 36.2 0.91
gb|HQ712173.1| Influenza A virus (A/Karaj/5327/2010(H1N1)) se... 36.2 0.91
dbj|AB558396.1| Influenza A virus (A/Sendai/TU617/2009(H1N1))... 36.2 0.91
gb|HQ606477.1| Influenza A virus (A/Thailand/SN_0116/2010(H1N... 36.2 0.91
gb|HQ207569.1| Influenza A virus (A/Thailand/34-9937/2010(H1N... 36.2 0.91
gb|HQ207566.1| Influenza A virus (A/Thailand/34-9912/2010(H1N... 36.2 0.91
gb|CY062316.1| Influenza A virus (A/swine/Thailand/CU-RA75/20... 36.2 0.91

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