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niman
PostPosted: Sun Feb 13, 2011 7:37 pm 
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JF279894.1 Influenza A virus (A/swine/Costa Rica/000125-16/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:38 pm 
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JF279891.1 Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:40 pm 
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JF279891.1 Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:41 pm 
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JF279897.1 Influenza A virus (A/swine/Costa Rica/000125-19/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:42 pm 
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JF279894.1 Influenza A virus (A/swine/Costa Rica/000125-16/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:44 pm 
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JF279900.1 Influenza A virus (A/swine/Costa Rica/000125-20/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

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niman
PostPosted: Sun Feb 13, 2011 7:46 pm 
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The above series represents polymorphisms found in CR 125-3 and one other isolate from the herd. Note the large number of different combinations (due to recombination).

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niman
PostPosted: Sun Feb 13, 2011 7:50 pm 
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JF279897.1 Influenza A virus (A/swine/Costa Rica/000125-19/2010(H1N1))
JF279894.1 Influenza A virus (A/swine/Costa Rica/000125-16/2010(H1N1))
JF279888.1 Influenza A virus (A/swine/Costa Rica/000125-14/2010(H1N1))

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niman
PostPosted: Mon Feb 14, 2011 7:51 am 
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niman wrote:
A1222G (T394A)

JF279897.1 Influenza A virus (A/swine/Costa Rica/000125-19/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

GISAID pedigree

EPI268095 A/duck/Shantou/2167/2001 (A/H6N2) segment 4 (HA) 27.0 6.04065
EPI247649 A/New York/5186/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.04065
EPI224192 A/Houston/17OS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.04065
EPI224184 A/Houston/16OS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.04065

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niman
PostPosted: Mon Feb 14, 2011 7:52 am 
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niman wrote:
A1227T

JF279894.1 Influenza A virus (A/swine/Costa Rica/000125-16/2010(H1N1))
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))

GISAID

EPI303670 A/Canada-MB/RV2121/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.04065

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