Rhiza Labs FluTracker Forum

The USDA has released six HA sequences from Costa Rica swine collected in November, 2010. These sequences are closely related to each, and quite distinct from the pH1N1 dominant in November/December human isolates in the United States and Canada.

One of the isoaltes, A/swine/Costa Rica/000125-15/2010, has a cluster of RBD changes (H184D, S188R, D190Y, Q192H, D199Y). Two of these changes (H184D and D190Y) are also in another isolate, A/swine/Costa Rica/000125-3/2010.

These sequences serve as a dynamic reservoir for rapid H1n1 evolution, including RBD changes.

Other nonsynonymous changes in this series are N34D, K57R, K122N, P162L, S165I, E238K, K286R, A318V, I375V, R549K. Most of these changes are in most of these Costa Rica swine isolates.

_________________
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LOCUS JF279891 1701 bp cRNA linear VRL 09-FEB-2011
DEFINITION Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1)) segment
4 hemagglutinin (HA) gene, complete cds.
ACCESSION JF279891
VERSION JF279891.1 GI:321495758
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1))
ORGANISM Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1701)
AUTHORS McGill,J.L.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2011) DVL-BPA, USDA, APHIS, NVSL, 1920 Dayton
Ave., Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..1701
/organism="Influenza A virus (A/swine/Costa
Rica/000125-15/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/swine/Costa Rica/000125-15/2010"
/serotype="H1N1"
/host="swine"
/db_xref="taxon:980289"
/segment="4"
/country="Costa Rica"
/collection_date="01-Nov-2010"
/note="lineage: swl"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADW93789.1"
/db_xref="GI:321495759"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVDLLEDKHNGKLCKLRGVAPLHLGRCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPNTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHDPSTRAYQHSLYQNAYAYVFV
GSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVKPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPRGAINTSLPFQNIHPITIGKCPKYVKSTKLRLVTG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAVDEI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt tgaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt agatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt agaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaatac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gctgcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca cgatccatct
601 actagggctt accaacatag tctctatcag aatgcatatg catatgtttt tgtggggtca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaggt gagggatcaa
721 gaagggagaa tgaactatta ctggacatta gtaaagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accaagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccagg
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggtcacag gattgaggaa tgtcccgtct
1021 atccaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagct
1141 gacctgaaga gcacacagaa tgccgttgac gagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagcta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtattta a

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LOCUS JF279885 1701 bp cRNA linear VRL 09-FEB-2011
DEFINITION Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1)) segment
4 hemagglutinin (HA) gene, complete cds.
ACCESSION JF279885
VERSION JF279885.1 GI:321495744
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))
ORGANISM Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1701)
AUTHORS McGill,J.L.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2011) DVL-BPA, USDA, APHIS, NVSL, 1920 Dayton
Ave., Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..1701
/organism="Influenza A virus (A/swine/Costa
Rica/000125-3/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/swine/Costa Rica/000125-3/2010"
/serotype="H1N1"
/host="swine"
/db_xref="taxon:980293"
/segment="4"
/country="Costa Rica"
/collection_date="01-Nov-2010"
/note="lineage: swl"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADW93781.1"
/db_xref="GI:321495745"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVDLLEDKHNGKLCKLRGVAPLHLGRCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPNTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYLKLSKSYINDKGKEVLVLWGIHDPSTSAYQQSLYQNADAYVFV
GSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVKPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPRGAINTSLPFQNIHPITIGKCPKYVKSTKLRLVTG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAVDEI
TNKVNSVIEKMNTQFAAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLNYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt tgaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt agatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt agaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaatac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gctgcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacctaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca cgatccatct
601 actagtgctt accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggtca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaggt gagggatcaa
721 gaagggagaa tgaactatta ctggacatta gtaaagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accaagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccagg
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggtcacag gattgaggaa tgtcccgtct
1021 atccaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagct
1141 gacctgaaga gcacacagaa tgccgttgac gagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cgcagctgta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctattgga aaatgaaaga actttgaact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagcta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtattta a

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Prior isolates with D190Y

EPI295732 A/England/4500186/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.91705
EPI231507 A/Brazil/7450/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.91705

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N34D at GISAID

EPI301814 A/Aragon/RR6925/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI295399 A/El Salvador/798/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI294156 A/SYDNEY/202/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI288194 A/Boston/591/2009 (A/H1N1) segment 4 (HA) 27.0 5.97323
EPI286988 A/CapeTown/29/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI283772 A/Habana/10295/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI282535 A/Managua/4063.01/2009 (A/H1N1) segment 4 (HA) 27.0 5.97323
EPI282271 A/Managua/2339.03/2009 (A/H1N1) segment 4 (HA) 27.0 5.97323
EPI280320 A/Pennsylvania/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI278896 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI278878 A/Mexico/2880/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI278546 A/Georgia/1842/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI278380 A/Ghana/FS-09-1345/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI278309 A/Ohio/AF2519/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276632 A/Germany/AF2210/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276629 A/Germany/AF2207/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276611 A/Florida/AF2189/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276565 A/ENG/1055/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276223 A/Connecticut/AF2150/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI276164 A/Alaska/AF2088/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273900 A/California/09/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273891 A/Dnipropetrovsk/445/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273888 A/Ukraine/220/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273838 A/Wisconsin/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273792 A/Wisconsin/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273738 A/Minnesota/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273674 A/Arizona/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273662 A/Texas/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273656 A/Hawaii/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI273626 A/Arizona/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI271006 A/Vienna/INS291/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI269460 A/Netherlands/2442b/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI266001 A/Volgograd/CRIE-VAA/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI257488 A/Shanghai/SWL1675/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI255989 A/Morocco/1024H/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI252634 A/San Diego/INS105/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI246876 A/New York/6809/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI246572 A/New York/5083/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI246540 A/New York/4990/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI230277 A/Orenburg/IIV2974/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI226536 A/YOKOHAMA/1000/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI221172 A/Tennessee/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI217286 A/ENG/318/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI217284 A/ENG/316/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI217283 A/ENG/314/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI216889 A/Kansas/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI180584 A/Arizona/02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI178419 A/Arizona/02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323

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H34D at Genbank


gb|JF279900.1| Influenza A virus (A/swine/Costa Rica/000125-2... 40.1 0.058
gb|JF279897.1| Influenza A virus (A/swine/Costa Rica/000125-1... 40.1 0.058
gb|JF279894.1| Influenza A virus (A/swine/Costa Rica/000125-1... 40.1 0.058
gb|JF279891.1| Influenza A virus (A/swine/Costa Rica/000125-1... 40.1 0.058
gb|JF279888.1| Influenza A virus (A/swine/Costa Rica/000125-1... 40.1 0.058
gb|JF279885.1| Influenza A virus (A/swine/Costa Rica/000125-3... 40.1 0.058
gb|HQ880591.1| Influenza A virus (A/Denmark/111/2010(H1N1)) s... 40.1 0.058
gb|HQ239519.1| Influenza A virus (A/Canada-NB/RV2457/2009(H1N... 40.1 0.058
gb|CY075500.1| Influenza A virus (A/Boston/591/2009(H1N1)) se... 40.1 0.058
gb|HQ190940.1| Influenza A virus (A/Habana/10295/2010(H1N1)) ... 40.1 0.058
gb|CY072926.1| Influenza A virus (A/Managua/4063.01/2009(H1N1... 40.1 0.058
gb|CY072662.1| Influenza A virus (A/Managua/2339.03/2009(H1N1... 40.1 0.058
gb|CY072025.1| Influenza A virus (A/Ohio/AF2519/2009(H1N1)) s... 40.1 0.058
gb|CY070040.1| Influenza A virus (A/Germany/AF2210/2010(H1N1)... 40.1 0.058
gb|CY070037.1| Influenza A virus (A/Germany/AF2207/2010(H1N1)... 40.1 0.058
gb|CY069971.1| Influenza A virus (A/Florida/AF2189/2009(H1N1)... 40.1 0.058
gb|CY069719.1| Influenza A virus (A/Connecticut/AF2150/2009(H... 40.1 0.058
gb|CY069660.1| Influenza A virus (A/Alaska/AF2088/2009(H1N1))... 40.1 0.058
gb|CY066703.1| Influenza A virus (A/Vienna/INS291/2009(H1N1))... 40.1 0.058
gb|CY065816.1| Influenza A virus (A/Netherlands/2442b/2009(H1... 40.1 0.058
gb|HM189361.1| Influenza A virus (A/Volgograd/CRIE-VAA/2009(H... 40.1 0.058
gb|CY061259.1| Influenza A virus (A/San Diego/INS105/2009(H1N... 40.1 0.058
gb|CY056811.1| Influenza A virus (A/New York/6809/2009(H1N1))... 40.1 0.058
gb|CY056507.1| Influenza A virus (A/New York/5083/2009(H1N1))... 40.1 0.058
gb|CY056475.1| Influenza A virus (A/New York/4990/2009(H1N1))... 40.1 0.058
gb|GU371256.1| Influenza A virus (A/Orenburg/IIV2974/2009(H1N... 40.1 0.058
gb|GQ221788.1| Influenza A virus (A/Arizona/02/2009(H1N1)) se... 40.1 0.058
gb|GQ117079.1| Influenza A virus (A/Arizona/02/2009(H1N1)) se... 40.1 0.058

_________________
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K57R at GISAID

EPI297185 A/Sendai/TU587/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323
EPI287714 A/Qingdao/1779/2009 (A/H1N1) segment 4 (HA) 27.0 5.97323
EPI218311 A/New York/4866/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.97323

K57R at Genbank

JF279900.1 Influenza A virus (A/swine/Costa Rica/000125-20/2010(H1N1)) segment 4 hemagglutinin
JF279897.1 Influenza A virus (A/swine/Costa Rica/000125-19/2010(H1N1)) segment 4 hemagglutinin
JF279894.1 Influenza A virus (A/swine/Costa Rica/000125-16/2010(H1N1)) segment 4 hemagglutinin
JF279891.1 Influenza A virus (A/swine/Costa Rica/000125-15/2010(H1N1)) segment 4 hemagglutinin
JF279888.1 Influenza A virus (A/swine/Costa Rica/000125-14/2010(H1N1)) segment 4 hemagglutinin
JF279885.1 Influenza A virus (A/swine/Costa Rica/000125-3/2010(H1N1)) segment 4 hemagglutinin
AB558390.1 Influenza A virus (A/Sendai/TU587/2009(H1N1)) HA gene for hemagglutinin
CY067628.1 Influenza A virus (A/Qingdao/1779/2009(H1N1)) segment 4 sequence
CY051799.1 Influenza A virus (A/New York/4866/2009(H1N1)) segment 4

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G291A (partial list)

gb|JF279900.1| Influenza A virus (A/swine/Costa Rica/000125-2... 28.2 1.4
gb|JF279897.1| Influenza A virus (A/swine/Costa Rica/000125-1... 28.2 1.4
gb|JF279894.1| Influenza A virus (A/swine/Costa Rica/000125-1... 28.2 1.4
gb|JF279891.1| Influenza A virus (A/swine/Costa Rica/000125-1... 28.2 1.4
gb|JF279888.1| Influenza A virus (A/swine/Costa Rica/000125-1... 28.2 1.4
gb|JF279885.1| Influenza A virus (A/swine/Costa Rica/000125-3... 28.2 1.4
gb|CY081566.1| Influenza A virus (A/swine/South Dakota/4/2010... 28.2 1.4
gb|CY081017.1| Influenza A virus (A/Boston/93/2009(H1N1)) hem... 28.2 1.4
gb|CY081009.1| Influenza A virus (A/Boston/92/2009(H1N1)) hem... 28.2 1.4
gb|CY081001.1| Influenza A virus (A/Boston/91/2009(H1N1)) hem... 28.2 1.4
gb|CY080993.1| Influenza A virus (A/Boston/89/2009(H1N1)) hem... 28.2 1.4
gb|CY080985.1| Influenza A virus (A/Boston/88/2009(H1N1)) hem... 28.2 1.4
gb|CY080977.1| Influenza A virus (A/Boston/86/2009(H1N1)) hem... 28.2 1.4
gb|CY080969.1| Influenza A virus (A/Boston/85/2009(H1N1)) hem... 28.2 1.4
gb|CY080961.1| Influenza A virus (A/Boston/84/2009(H1N1)) hem... 28.2 1.4
gb|CY080953.1| Influenza A virus (A/Boston/83/2009(H1N1)) hem... 28.2 1.4
gb|CY080945.1| Influenza A virus (A/Boston/76/2009(H1N1)) hem... 28.2 1.4
gb|CY080937.1| Influenza A virus (A/Boston/72/2009(H1N1)) hem... 28.2 1.4
gb|CY080929.1| Influenza A virus (A/Boston/71/2009(H1N1)) hem... 28.2 1.4
gb|CY080921.1| Influenza A virus (A/Boston/68/2009(H1N1)) hem... 28.2 1.4
gb|CY080913.1| Influenza A virus (A/Boston/67/2009(H1N1)) hem... 28.2 1.4
gb|CY080905.1| Influenza A virus (A/Boston/66/2009(H1N1)) hem... 28.2 1.4
gb|CY080897.1| Influenza A virus (A/Boston/65/2009(H1N1)) hem... 28.2 1.4
gb|CY080889.1| Influenza A virus (A/Boston/64/2009(H1N1)) hem... 28.2 1.4
gb|CY080881.1| Influenza A virus (A/Boston/63/2009(H1N1)) hem... 28.2 1.4
gb|CY080873.1| Influenza A virus (A/Boston/62/2009(H1N1)) hem... 28.2 1.4
gb|CY080865.1| Influenza A virus (A/Boston/60/2009(H1N1)) hem... 28.2 1.4
gb|CY080857.1| Influenza A virus (A/Boston/58/2009(H1N1)) hem... 28.2 1.4
gb|CY080849.1| Influenza A virus (A/Boston/52/2009(H1N1)) hem... 28.2 1.4
gb|CY080841.1| Influenza A virus (A/Boston/51/2009(H1N1)) hem... 28.2 1.4
gb|CY080833.1| Influenza A virus (A/Boston/49/2009(H1N1)) hem... 28.2 1.4
gb|CY080825.1| Influenza A virus (A/Boston/48/2009(H1N1)) hem... 28.2 1.4
gb|CY080817.1| Influenza A virus (A/Boston/45/2009(H1N1)) hem... 28.2 1.4
gb|CY080809.1| Influenza A virus (A/Boston/43/2009(H1N1)) hem... 28.2 1.4
gb|CY080801.1| Influenza A virus (A/Boston/42/2009(H1N1)) hem... 28.2 1.4
gb|CY080793.1| Influenza A virus (A/Boston/41/2009(H1N1)) hem... 28.2 1.4
gb|CY080785.1| Influenza A virus (A/Boston/39/2009(H1N1)) hem... 28.2 1.4
gb|CY080777.1| Influenza A virus (A/Boston/38/2009(H1N1)) hem... 28.2 1.4
gb|CY080769.1| Influenza A virus (A/Boston/37/2009(H1N1)) hem... 28.2 1.4
gb|CY080761.1| Influenza A virus (A/Boston/36/2009(H1N1)) hem... 28.2 1.4
gb|CY080753.1| Influenza A virus (A/Boston/35/2009(H1N1)) hem... 28.2 1.4
gb|CY080745.1| Influenza A virus (A/Boston/33/2009(H1N1)) hem... 28.2 1.4
gb|CY080737.1| Influenza A virus (A/Boston/30/2009(H1N1)) hem... 28.2 1.4
gb|CY080729.1| Influenza A virus (A/Boston/28/2009(H1N1)) hem... 28.2 1.4
gb|CY080721.1| Influenza A virus (A/Boston/27/2009(H1N1)) hem... 28.2 1.4
gb|CY080713.1| Influenza A virus (A/Boston/26/2009(H1N1)) hem... 28.2 1.4
gb|CY080705.1| Influenza A virus (A/Boston/24/2009(H1N1)) hem... 28.2 1.4
gb|CY080697.1| Influenza A virus (A/Boston/21/2009(H1N1)) hem... 28.2 1.4
gb|CY080689.1| Influenza A virus (A/Boston/20/2009(H1N1)) hem... 28.2 1.4
gb|CY080681.1| Influenza A virus (A/Boston/18/2009(H1N1)) hem... 28.2 1.4
gb|CY080673.1| Influenza A virus (A/Boston/17/2009(H1N1)) hem... 28.2 1.4
gb|CY080658.1| Influenza A virus (A/Boston/14/2009(H1N1)) hem... 28.2 1.4
gb|CY080650.1| Influenza A virus (A/Boston/13/2009(H1N1)) hem... 28.2 1.4
gb|CY080642.1| Influenza A virus (A/Boston/11/2009(H1N1)) hem... 28.2 1.4
gb|CY080634.1| Influenza A virus (A/Boston/4/2009(H1N1)) hema... 28.2 1.4
gb|CY080626.1| Influenza A virus (A/Boston/1/2009(H1N1)) hema... 28.2 1.4
gb|CY080618.1| Influenza A virus (A/Boston/100/2009(H1N1)) he... 28.2 1.4
gb|CY080610.1| Influenza A virus (A/Boston/95/2009(H1N1)) hem... 28.2 1.4
gb|CY080602.1| Influenza A virus (A/Boston/80/2009(H1N1)) hem... 28.2 1.4
gb|CY080594.1| Influenza A virus (A/Boston/3/2009(H1N1)) hema... 28.2 1.4
gb|HQ844977.1| Influenza A virus (A/Manhean/02/2008(H1N1)) se... 28.2 1.4
gb|HQ844976.1| Influenza A virus (A/Korlebu/01/2008(H1N1)) se... 28.2 1.4
gb|HQ166044.1| Influenza A virus (A/Netherlands/26/2007(H1N1)... 28.2 1.4
gb|HM371162.1| Influenza A virus (A/KOL/2419/2009(H1N1)) segm... 28.2 1.4
gb|HM371161.1| Influenza A virus (A/KOL/2336/2009(H1N1)) segm... 28.2 1.4
gb|GU323722.1| Influenza A virus (A/Kolkata/1061/2007(H1N1)) ... 28.2 1.4
gb|GU323721.1| Influenza A virus (A/Kolkata/604/2006(H1N1)) s... 28.2 1.4
gb|GU323720.1| Influenza A virus (A/Kolkata/578/2006(H1N1)) s... 28.2 1.4
gb|GU323719.1| Influenza A virus (A/Kolkata/565/2006(H1N1)) s... 28.2 1.4
gb|GU323718.1| Influenza A virus (A/Kolkata/1002/2007(H1N1)) ... 28.2 1.4
gb|GU323717.1| Influenza A virus (A/Kolkata/990/2007(H1N1)) s... 28.2 1.4
gb|GU323716.1| Influenza A virus (A/Kolkata/975/2007(H1N1)) s... 28.2 1.4
gb|GU323715.1| Influenza A virus (A/Kolkata/959/2007(H1N1)) s... 28.2 1.4
gb|GU323714.1| Influenza A virus (A/Kolkata/956/2007(H1N1)) s... 28.2 1.4
gb|GU323713.1| Influenza A virus (A/Kolkata/951/2007(H1N1)) s... 28.2 1.4
gb|GU323712.1| Influenza A virus (A/Kolkata/943/2007(H1N1)) s... 28.2 1.4
gb|GU323711.1| Influenza A virus (A/Kolkata/929/2007(H1N1)) s... 28.2 1.4
gb|GU323710.1| Influenza A virus (A/Kolkata/919/2007(H1N1)) s... 28.2 1.4
gb|GU323709.1| Influenza A virus (A/Kolkata/918/2007(H1N1)) s... 28.2 1.4
gb|CY077881.1| Influenza A virus (A/Hemsbury/1948(H1N1)) segm... 28.2 1.4
gb|CY077756.1| Influenza A virus (A/Netherlands/001S1/1948(H1... 28.2 1.4
gb|GU646016.1| Influenza A virus (A/swine/Fujian/0325/2008(H1... 28.2 1.4
gb|HQ658484.1| Influenza A virus (A/Lyon/1364/2007(H1N1)) seg... 28.2 1.4
gb|HQ658483.1| Influenza A virus (A/Lyon/1337/2007(H1N1)) seg... 28.2 1.4
gb|GQ373070.1| Influenza A virus (A/chicken/Shandong/ZB/2007(... 28.2 1.4
gb|HM371160.1| Influenza A virus (A/KOL/2218/2009(H1N1)) segm... 28.2 1.4
gb|HM371159.1| Influenza A virus (A/KOL/2172/2009(H1N1)) segm... 28.2 1.4
gb|HM371158.1| Influenza A virus (A/KOL/2086/2009(H1N1)) segm... 28.2 1.4
gb|HM460499.1| Influenza A virus (A/KOL/2465/2009(H1N1)) segm... 28.2 1.4
gb|HM460498.1| Influenza A virus (A/KOL/2449/2009(H1N1)) segm... 28.2 1.4
gb|HQ228030.1| Influenza A virus (A/Finland/571/2009(H1N1)) s... 28.2 1.4
gb|HQ424897.1| Influenza A virus (A/swine/Oklahoma/44837-5/20... 28.2 1.4
gb|HQ424894.1| Influenza A virus (A/swine/North Carolina/4483... 28.2 1.4
gb|HQ424888.1| Influenza A virus (A/swine/North Carolina/4483... 28.2 1.4
gb|HQ415586.1| Influenza A virus (A/Assam/SW109/2009(H1N1)) s... 28.2 1.4
gb|HQ415585.1| Influenza A virus (A/Assam/SW02/2009(H1N1)) se... 28.2 1.4
gb|CY075856.1| Influenza A virus (A/swine/Argentina/CIP051-Bs... 28.2 1.4
gb|CY075490.1| Influenza A virus (A/Tottori/52/2008(H1N1)) se... 28.2 1.4
gb|CY074667.1| Influenza A virus (A/California/VRDL382/2009(H... 28.2 1.4
gb|CY074659.1| Influenza A virus (A/California/VRDL380/2009(H... 28.2 1.4
gb|CY074651.1| Influenza A virus (A/California/VRDL379/2009(H... 28.2 1.4
gb|CY074643.1| Influenza A virus (A/California/VRDL378/2009(H... 28.2 1.4
gb|CY074635.1| Influenza A virus (A/California/VRDL377/2009(H... 28.2 1.4
gb|CY074627.1| Influenza A virus (A/California/VRDL371/2009(H... 28.2 1.4
gb|CY074611.1| Influenza A virus (A/California/VRDL366/2009(H... 28.2 1.4
gb|CY074603.1| Influenza A virus (A/California/VRDL365/2009(H... 28.2 1.4
gb|CY074595.1| Influenza A virus (A/California/VRDL358/2009(H... 28.2 1.4
gb|CY074587.1| Influenza A virus (A/California/VRDL348/2009(H... 28.2 1.4
gb|CY074579.1| Influenza A virus (A/California/VRDL346/2009(H... 28.2 1.4
gb|CY074571.1| Influenza A virus (A/California/VRDL341/2009(H... 28.2 1.4
gb|CY074563.1| Influenza A virus (A/California/VRDL326/2009(H... 28.2 1.4
gb|CY074555.1| Influenza A virus (A/California/VRDL324/2009(H... 28.2 1.4
gb|CY074531.1| Influenza A virus (A/California/VRDL301/2009(H... 28.2 1.4
gb|CY074515.1| Influenza A virus (A/California/VRDL299/2009(H... 28.2 1.4
gb|CY074499.1| Influenza A virus (A/California/VRDL297/2009(H... 28.2 1.4
gb|CY074491.1| Influenza A virus (A/California/VRDL295/2009(H... 28.2 1.4
gb|CY074483.1| Influenza A virus (A/California/VRDL292/2009(H... 28.2 1.4
gb|CY074475.1| Influenza A virus (A/California/VRDL290/2009(H... 28.2 1.4
gb|CY074467.1| Influenza A virus (A/California/VRDL289/2009(H... 28.2 1.4
gb|CY074459.1| Influenza A virus (A/California/VRDL284/2009(H... 28.2 1.4
gb|CY074451.1| Influenza A virus (A/California/VRDL283/2009(H... 28.2 1.4
gb|CY074435.1| Influenza A virus (A/California/VRDL280/2009(H... 28.2 1.4
gb|CY074427.1| Influenza A virus (A/California/VRDL276/2009(H... 28.2 1.4
gb|CY074419.1| Influenza A virus (A/California/VRDL275/2009(H... 28.2 1.4
gb|CY074411.1| Influenza A virus (A/California/VRDL273/2009(H... 28.2 1.4
gb|CY074403.1| Influenza A virus (A/California/VRDL270/2009(H... 28.2 1.4
gb|CY074395.1| Influenza A virus (A/California/VRDL267/2009(H... 28.2 1.4
gb|CY074387.1| Influenza A virus (A/California/VRDL264/2009(H... 28.2 1.4
gb|CY074379.1| Influenza A virus (A/California/VRDL258/2009(H... 28.2 1.4
gb|CY074371.1| Influenza A virus (A/California/VRDL256/2009(H... 28.2 1.4
gb|CY074355.1| Influenza A virus (A/California/VRDL252/2009(H... 28.2 1.4
gb|CY074347.1| Influenza A virus (A/California/VRDL251/2009(H... 28.2 1.4
gb|CY074339.1| Influenza A virus (A/California/VRDL249/2009(H... 28.2 1.4
gb|CY074331.1| Influenza A virus (A/California/VRDL245/2009(H... 28.2 1.4
gb|CY074323.1| Influenza A virus (A/California/VRDL244/2009(H... 28.2 1.4
gb|CY074315.1| Influenza A virus (A/California/VRDL239/2009(H... 28.2 1.4
gb|CY074299.1| Influenza A virus (A/California/VRDL237/2009(H... 28.2 1.4
gb|CY074291.1| Influenza A virus (A/California/VRDL236/2009(H... 28.2 1.4
gb|CY074275.1| Influenza A virus (A/California/VRDL232/2009(H... 28.2 1.4
gb|CY074267.1| Influenza A virus (A/California/VRDL228/2009(H... 28.2 1.4
gb|CY074259.1| Influenza A virus (A/California/VRDL227/2009(H... 28.2 1.4
gb|CY074251.1| Influenza A virus (A/California/VRDL226/2009(H... 28.2 1.4
gb|CY074243.1| Influenza A virus (A/California/VRDL225/2009(H... 28.2 1.4
gb|CY074227.1| Influenza A virus (A/California/VRDL223/2009(H... 28.2 1.4
gb|CY074219.1| Influenza A virus (A/California/VRDL222/2009(H... 28.2 1.4
gb|CY074211.1| Influenza A virus (A/California/VRDL221/2009(H... 28.2 1.4
gb|CY074203.1| Influenza A virus (A/California/VRDL220/2009(H... 28.2 1.4
gb|CY074195.1| Influenza A virus (A/California/VRDL219/2009(H... 28.2 1.4
gb|CY074187.1| Influenza A virus (A/California/VRDL218/2009(H... 28.2 1.4
gb|CY074179.1| Influenza A virus (A/California/VRDL217/2009(H... 28.2 1.4
gb|CY074171.1| Influenza A virus (A/California/VRDL215/2009(H... 28.2 1.4
gb|CY074163.1| Influenza A virus (A/California/VRDL213/2009(H... 28.2 1.4
gb|CY074155.1| Influenza A virus (A/California/VRDL209/2009(H... 28.2 1.4
gb|CY074147.1| Influenza A virus (A/California/VRDL206/2009(H... 28.2 1.4
gb|CY074139.1| Influenza A virus (A/California/VRDL202/2009(H... 28.2 1.4
gb|CY074131.1| Influenza A virus (A/California/VRDL200/2009(H... 28.2 1.4
gb|CY074123.1| Influenza A virus (A/California/VRDL194/2009(H... 28.2 1.4
gb|CY074115.1| Influenza A virus (A/California/VRDL193/2009(H... 28.2 1.4
gb|CY074099.1| Influenza A virus (A/California/VRDL189/2009(H... 28.2 1.4
gb|CY074091.1| Influenza A virus (A/California/VRDL186/2009(H... 28.2 1.4
gb|CY074083.1| Influenza A virus (A/California/VRDL180/2009(H... 28.2 1.4
gb|HQ256648.1| Influenza A virus (A/Myanmar/M533/2009(H1N1)) ... 28.2 1.4
gb|HQ256646.1| Influenza A virus (A/Myanmar/M494/2009(H1N1)) ... 28.2 1.4
gb|HQ256644.1| Influenza A virus (A/Myanmar/M470/2009(H1N1)) ... 28.2 1.4
gb|HQ256642.1| Influenza A virus (A/Myanmar/M428/2009(H1N1)) ... 28.2 1.4
gb|HQ256640.1| Influenza A virus (A/Myanmar/M411/2009(H1N1)) ... 28.2 1.4
gb|HQ256638.1| Influenza A virus (A/Myanmar/M374/2009(H1N1)) ... 28.2 1.4
gb|HQ256636.1| Influenza A virus (A/Myanmar/M353/2009(H1N1)) ... 28.2 1.4
gb|HQ256634.1| Influenza A virus (A/Myanmar/M314/2009(H1N1)) ... 28.2 1.4
gb|HQ256632.1| Influenza A virus (A/Myanmar/M306/2009(H1N1)) ... 28.2 1.4
gb|HQ256630.1| Influenza A virus (A/Myanmar/M294/2009(H1N1)) ... 28.2 1.4
gb|HQ256628.1| Influenza A virus (A/Myanmar/M286/2009(H1N1)) ... 28.2 1.4
gb|HQ256626.1| Influenza A virus (A/Myanmar/M279/2009(H1N1)) ... 28.2 1.4
gb|HQ256624.1| Influenza A virus (A/Myanmar/M278/2009(H1N1)) ... 28.2 1.4
gb|HQ256618.1| Influenza A virus (A/Myanmar/M256/2009(H1N1)) ... 28.2 1.4
gb|HQ256616.1| Influenza A virus (A/Myanmar/M253/2009(H1N1)) ... 28.2 1.4
gb|HQ256614.1| Influenza A virus (A/Myanmar/M218/2009(H1N1)) ... 28.2 1.4
gb|HQ256612.1| Influenza A virus (A/Myanmar/M121/2009(H1N1)) ... 28.2 1.4
gb|HQ256610.1| Influenza A virus (A/Myanmar/M097/2009(H1N1)) ... 28.2 1.4
gb|HQ256608.1| Influenza A virus (A/Myanmar/M061/2009(H1N1)) ... 28.2 1.4
gb|HQ256606.1| Influenza A virus (A/Myanmar/M486/2008(H1N1)) ... 28.2 1.4
gb|HQ256604.1| Influenza A virus (A/Myanmar/M438/2008(H1N1)) ... 28.2 1.4
gb|HQ256602.1| Influenza A virus (A/Myanmar/M424/2008(H1N1)) ... 28.2 1.4
gb|HQ256600.1| Influenza A virus (A/Myanmar/M419/2008(H1N1)) ... 28.2 1.4
gb|HQ256598.1| Influenza A virus (A/Myanmar/M416/2008(H1N1)) ... 28.2 1.4
gb|HQ256596.1| Influenza A virus (A/Myanmar/M372/2008(H1N1)) ... 28.2 1.4
gb|HQ256594.1| Influenza A virus (A/Myanmar/M356/2008(H1N1)) ... 28.2 1.4
gb|HQ256592.1| Influenza A virus (A/Myanmar/M350/2008(H1N1)) ... 28.2 1.4
gb|HQ256590.1| Influenza A virus (A/Myanmar/M339/2008(H1N1)) ... 28.2 1.4
gb|HQ256588.1| Influenza A virus (A/Myanmar/M244/2008(H1N1)) ... 28.2 1.4
gb|HQ256586.1| Influenza A virus (A/Myanmar/M232/2008(H1N1)) ... 28.2 1.4
gb|HQ256584.1| Influenza A virus (A/Myanmar/M193/2008(H1N1)) ... 28.2 1.4
gb|CY073861.1| Influenza A virus (A/California/VRDL229/2009(H... 28.2 1.4
gb|CY073853.1| Influenza A virus (A/California/VRDL175/2009(H... 28.2 1.4
gb|CY073845.1| Influenza A virus (A/California/VRDL167/2009(H... 28.2 1.4
gb|CY073837.1| Influenza A virus (A/California/VRDL163/2009(H... 28.2 1.4
gb|CY073829.1| Influenza A virus (A/California/VRDL155/2009(H... 28.2 1.4
gb|CY073821.1| Influenza A virus (A/California/VRDL154/2009(H... 28.2 1.4
gb|CY073805.1| Influenza A virus (A/California/VRDL152/2009(H... 28.2 1.4
gb|HM461770.1| Influenza A virus (A/swine/Iowa/02039/2008(H1N... 28.2 1.4
gb|HM461850.1| Influenza A virus (A/swine/Texas/01976/2008(H1... 28.2 1.4
gb|HM778117.1| Influenza A virus (A/swine/Minnesota/03043/201... 28.2 1.4
gb|CY070911.1| Influenza A virus (A/California/VRDL151/2009(H... 28.2 1.4
gb|CY070903.1| Influenza A virus (A/California/VRDL150/2009(H... 28.2 1.4
gb|CY070895.1| Influenza A virus (A/California/VRDL149/2009(H... 28.2 1.4
gb|CY070152.1| Influenza A virus (A/Peru/WRAIR1509P/2007(H1N1... 28.2 1.4
gb|CY070136.1| Influenza A virus (A/Peru/WRAIR1505P/2007(H1N1... 28.2 1.4
gb|CY070128.1| Influenza A virus (A/Peru/WRAIR1378P/2007(H1N1... 28.2 1.4
gb|CY070120.1| Influenza A virus (A/Peru/WRAIR1377P/2007(H1N1... 28.2 1.4
gb|CY070112.1| Influenza A virus (A/Peru/WRAIR1376P/2007(H1N1... 28.2 1.4
gb|CY070104.1| Influenza A virus (A/Peru/WRAIR1311P/2007(H1N1... 28.2 1.4
gb|CY070096.1| Influenza A virus (A/Peru/WRAIR1310P/2007(H1N1... 28.2 1.4
gb|CY070088.1| Influenza A virus (A/Peru/WRAIR1300P/2007(H1N1... 28.2 1.4
gb|CY070080.1| Influenza A virus (A/Peru/WRAIR1299P/2007(H1N1... 28.2 1.4
gb|CY070072.1| Influenza A virus (A/Peru/WRAIR1298P/2007(H1N1... 28.2 1.4
gb|CY070064.1| Influenza A virus (A/Peru/WRAIR1296P/2007(H1N1... 28.2 1.4
gb|CY070056.1| Influenza A virus (A/Peru/WRAIR1295P/2007(H1N1... 28.2 1.4
gb|CY069549.1| Influenza A virus (A/Texas/WRAIR1254P/2009(H1N... 28.2 1.4
gb|CY069541.1| Influenza A virus (A/Arkansas/WRAIR1249P/2009(... 28.2 1.4
gb|CY069533.1| Influenza A virus (A/Nebraska/WRAIR1247P/2009(... 28.2 1.4
gb|CY069509.1| Influenza A virus (A/Japan/WRAIR1230P/2009(H1N... 28.2 1.4
gb|CY069485.1| Influenza A virus (A/Louisiana/WRAIR1170P/2009... 28.2 1.4
gb|CY069413.1| Influenza A virus (A/Washington/WRAIR1126P/200... 28.2 1.4
gb|CY069397.1| Influenza A virus (A/New Jersey/WRAIR1120P/200... 28.2 1.4
gb|CY069389.1| Influenza A virus (A/South Carolina/WRAIR1116P... 28.2 1.4
gb|CY069381.1| ## Influenza A virus (A/Alaska/WRAIR1114P/2009... 28.2 1.4
gb|CY069373.1| Influenza A virus (A/South Dakota/WRAIR1113P/2... 28.2 1.4
gb|CY069365.1| Influenza A virus (A/South Carolina/WRAIR1112P... 28.2 1.4
gb|CY069341.1| Influenza A virus (A/Texas/WRAIR1052P/2009(H1N... 28.2 1.4
gb|CY069309.1| Influenza A virus (A/Bogota/WRAIR0088N/2009(H1... 28.2 1.4
gb|HQ008263.1| Influenza A virus (A/Bellamy/1942(H1N1)) segme... 28.2 1.4
gb|HQ008261.1| Influenza A virus (A/Puerto Rico/8/1934(H1N1))... 28.2 1.4
gb|HQ008259.1| Influenza A virus (A/Wilson-Smith/1933(H1N1)) ... 28.2 1.4
gb|HQ008257.1| Influenza A virus (A/NWS/1933(H1N1)) segment 4... 28.2 1.4
gb|CY068676.1| Influenza A virus (A/Singapore/GP101/2009(H1N1... 28.2 1.4
gb|GQ202056.1| Influenza A virus (A/chicken/Hebei/A/2007(H9N2... 28.2 1.4
gb|GQ994962.1| Influenza A virus (A/St.Louis/792/2009(H1N1)) ... 28.2 1.4
gb|GQ994961.1| Influenza A virus (A/St.Louis/790/2009(H1N1)) ... 28.2 1.4
gb|GQ994960.1| Influenza A virus (A/St.Louis/775/2009(H1N1)) ... 28.2 1.4
gb|GQ994959.1| Influenza A virus (A/St.Louis/764/2009(H1N1)) ... 28.2 1.4
gb|GQ994958.1| Influenza A virus (A/St.Louis/758/2009(H1N1)) ... 28.2 1.4
gb|GQ994957.1| Influenza A virus (A/St.Louis/746/2009(H1N1)) ... 28.2 1.4
gb|GQ994955.1| Influenza A virus (A/St.Louis/630/2009(H1N1)) ... 28.2 1.4
gb|GQ994954.1| Influenza A virus (A/St.Louis/539/2009(H1N1)) ... 28.2 1.4
gb|FJ807719.1| Influenza A virus (A/chicken/Anhui/J27/2008(H9... 28.2 1.4
gb|FJ807718.1| Influenza A virus (A/chicken/Anhui/J22/2008(H9... 28.2 1.4
gb|FJ807717.1| Influenza A virus (A/chicken/Anhui/J21/2008(H9... 28.2 1.4
gb|FJ807716.1| Influenza A virus (A/chicken/Anhui/J13/2008(H9... 28.2 1.4
gb|FJ807715.1| Influenza A virus (A/chicken/Anhui/J7/2008(H9N... 28.2 1.4
gb|FJ807714.1| Influenza A virus (A/chicken/Anhui/J2/2008(H9N... 28.2 1.4
gb|FJ807713.1| Influenza A virus (A/chicken/Anhui/G24/2008(H9... 28.2 1.4
gb|FJ807711.1| Influenza A virus (A/chicken/Anhui/G6/2008(H9N... 28.2 1.4
gb|FJ807710.1| Influenza A virus (A/chicken/Anhui/J19/2008(H9... 28.2 1.4
gb|GQ924755.1| Influenza A virus (A/Busan/01/2009(H1N1)) segm... 28.2 1.4
gb|CY046987.1| Influenza A virus (A/Melbourne/1-MA/1946(H1N1)... 28.2 1.4
gb|CY046979.1| Influenza A virus (A/Puerto Rico/8-1-MA/1934(H... 28.2 1.4
gb|GQ896375.1| Influenza A virus (A/North Carolina/03/2009(H1... 28.2 1.4
gb|GQ896376.1| Influenza A virus (A/Wisconsin/14/2009(H1N1)) ... 28.2 1.4
gb|GQ896366.1| Influenza A virus (A/Wisconsin/14/2009(H1N1)) ... 28.2 1.4
gb|GQ896363.1| Influenza A virus (A/Wisconsin/13/2009(H1N1)) ... 28.2 1.4
gb|GQ896358.1| Influenza A virus (A/Iowa/01/2009(H1N1)) segme... 28.2 1.4
gb|FJ794130.1| Influenza A virus (A/Incheon/613/2005(H1N1)) s... 28.2 1.4
gb|FJ794129.1| Influenza A virus (A/Incheon/546/2005(H1N1)) s... 28.2 1.4
gb|FJ794128.1| Influenza A virus (A/Jeonbuk/444/2005(H1N1)) s... 28.2 1.4
gb|FJ794127.1| Influenza A virus (A/Jeju/244/2006(H1N1)) segm... 28.2 1.4
gb|FJ794126.1| Influenza A virus (A/Incheon/150/2006(H1N1)) s... 28.2 1.4
gb|FJ794125.1| Influenza A virus (A/Jeonbuk/1096/2005(H1N1)) ... 28.2 1.4
gb|FJ794124.1| Influenza A virus (A/Chungbuk/1183/2005(H1N1))... 28.2 1.4
gb|FJ794123.1| Influenza A virus (A/Daejeon/41/2006(H1N1)) se... 28.2 1.4
gb|FJ794122.1| Influenza A virus (A/Incheon/1054/2005(H1N1)) ... 28.2 1.4
gb|FJ794121.1| Influenza A virus (A/Jeonnam/1094/2005(H1N1)) ... 28.2 1.4
gb|FJ794120.1| Influenza A virus (A/Jeonbuk/1189/2005(H1N1)) ... 28.2 1.4
gb|FJ794119.1| Influenza A virus (A/Gangwon/799/2005(H1N1)) s... 28.2 1.4
gb|FJ794118.1| Influenza A virus (A/Gyeonggi/966/2005(H1N1)) ... 28.2 1.4
gb|FJ794117.1| Influenza A virus (A/Incheon/829/2005(H1N1)) s... 28.2 1.4
gb|FJ794116.1| Influenza A virus (A/Ulsan/752/2005(H1N1)) seg... 28.2 1.4
gb|FJ794115.1| Influenza A virus (A/Jeju/3083/2007(H1N1)) seg... 28.2 1.4
gb|FJ794114.1| Influenza A virus (A/Gangwon/3157/2007(H1N1)) ... 28.2 1.4
gb|FJ794113.1| Influenza A virus (A/Incheon/3147/2007(H1N1)) ... 28.2 1.4
gb|FJ794112.1| Influenza A virus (A/Incheon/3180/2007(H1N1)) ... 28.2 1.4
gb|FJ794111.1| Influenza A virus (A/Gyeongnam/3074/2007(H1N1)... 28.2 1.4
gb|FJ794110.1| Influenza A virus (A/Gyeongnam/3062/2007(H1N1)... 28.2 1.4
gb|FJ794109.1| Influenza A virus (A/Jeju/2879/2007(H1N1)) seg... 28.2 1.4
gb|FJ794108.1| Influenza A virus (A/Jeju/2888/2007(H1N1)) seg... 28.2 1.4
gb|FJ794107.1| Influenza A virus (A/Jeju/2824/2007(H1N1)) seg... 28.2 1.4
gb|FJ794106.1| Influenza A virus (A/Chungnam/1077/2008(H1N1))... 28.2 1.4
gb|FJ794105.1| Influenza A virus (A/Gwangju/904/2008(H1N1)) s... 28.2 1.4
gb|FJ794104.1| Influenza A virus (A/Gyeongnam/586/2008(H1N1))... 28.2 1.4
gb|FJ794103.1| Influenza A virus (A/Gangwon/557/2008(H1N1)) s... 28.2 1.4
gb|FJ794102.1| Influenza A virus (A/Seoul/416/2008(H1N1)) seg... 28.2 1.4
gb|FJ794101.1| Influenza A virus (A/Jeonbuk/279/2008(H1N1)) s... 28.2 1.4
gb|FJ794100.1| Influenza A virus (A/Gangwon/260/2008(H1N1)) s... 28.2 1.4
gb|FJ794099.1| Influenza A virus (A/Gangwon/252/2008(H1N1)) s... 28.2 1.4
gb|FJ794098.1| Influenza A virus (A/Incheon/248/2008(H1N1)) s... 28.2 1.4
gb|FJ794097.1| Influenza A virus (A/Gangwon/4678/2007(H1N1)) ... 28.2 1.4
gb|FJ794096.1| Influenza A virus (A/Incheon/4655/2007(H1N1)) ... 28.2 1.4
gb|FJ794095.1| Influenza A virus (A/Chungnam/4547/2007(H1N1))... 28.2 1.4
gb|FJ794094.1| Influenza A virus (A/Daejeon/361/2008(H1N1)) s... 28.2 1.4
gb|FJ794093.1| Influenza A virus (A/Chungbuk/4543/2007(H1N1))... 28.2 1.4
gb|FJ794091.1| Influenza A virus (A/Gyeongnam/4425/2008(H1N1)... 28.2 1.4
gb|FJ794090.1| Influenza A virus (A/Gyeongnam/4409/2008(H1N1)... 28.2 1.4
gb|FJ794089.1| Influenza A virus (A/Gyeongnam/4408/2008(H1N1)... 28.2 1.4
gb|FJ794088.1| Influenza A virus (A/Gwangju/4406/2008(H1N1)) ... 28.2 1.4
gb|FJ794087.1| Influenza A virus (A/Gyeonggi/4389/2008(H1N1))... 28.2 1.4
gb|FJ794086.1| Influenza A virus (A/Chungbuk/4383/2008(H1N1))... 28.2 1.4
gb|FJ794085.1| Influenza A virus (A/Daejeon/4348/2008(H1N1)) ... 28.2 1.4
gb|FJ794084.1| Influenza A virus (A/Incheon/4330/2008(H1N1)) ... 28.2 1.4
gb|FJ794083.1| Influenza A virus (A/Incheon/4328/2008(H1N1)) ... 28.2 1.4
gb|FJ794082.1| Influenza A virus (A/Gwangju/4325/2008(H1N1)) ... 28.2 1.4
gb|FJ794081.1| Influenza A virus (A/Gwangju/4324/2008(H1N1)) ... 28.2 1.4
gb|GQ850595.1| Influenza A virus (A/Shanghai/LWS1/2009(H1N1))... 28.2 1.4
gb|CY045860.1| Influenza A virus (A/Managua/1985.01/2008(H1N1... 28.2 1.4
gb|CY045844.1| Influenza A virus (A/NWS-F(NWS/1934-Rockefelle... 28.2 1.4
gb|CY045772.1| Influenza A virus (A/Melbourne/1/1946(H1N1)) s... 28.2 1.4
gb|CY045764.1| Influenza A virus (A/Puerto Rico/8-1/1934(H1N1... 28.2 1.4
gb|CY045756.1| Influenza A virus (A/United Kingdom/1/1933(H1N... 28.2 1.4
gb|CY045711.1| Influenza A virus (A/swine/Oklahoma/042169/200... 28.2 1.4
gb|CY045703.1| Influenza A virus (A/swine/Oklahoma/020736-1/2... 28.2 1.4
gb|CY045695.1| Influenza A virus (A/swine/Oklahoma/020736-2/2... 28.2 1.4
gb|CY045687.1| Influenza A virus (A/swine/Oklahoma/020734-3/2... 28.2 1.4
gb|CY045679.1| Influenza A virus (A/swine/Oklahoma/020734-2/2... 28.2 1.4
gb|CY045663.1| Influenza A virus (A/swine/Oklahoma/016179-8/2... 28.2 1.4
gb|CY045655.1| Influenza A virus (A/swine/Oklahoma/011521-4/2... 28.2 1.4
gb|CY045647.1| Influenza A virus (A/swine/Oklahoma/011521-5/2... 28.2 1.4
gb|CY045639.1| Influenza A virus (A/swine/Oklahoma/011289-8/2... 28.2 1.4
gb|CY045631.1| Influenza A virus (A/swine/Oklahoma/011289-10/... 28.2 1.4
gb|CY045623.1| Influenza A virus (A/swine/Oklahoma/011289-9/2... 28.2 1.4
gb|CY045615.1| Influenza A virus (A/swine/Oklahoma/010710-8/2... 28.2 1.4
gb|CY045607.1| Influenza A virus (A/swine/Oklahoma/010710-9/2... 28.2 1.4
gb|CY045599.1| Influenza A virus (A/swine/Oklahoma/010226-17/... 28.2 1.4
gb|CY045591.1| Influenza A virus (A/swine/Oklahoma/010226-16/... 28.2 1.4
gb|CY045583.1| Influenza A virus (A/swine/Texas/008648/2008(H... 28.2 1.4
gb|CY045543.1| Influenza A virus (A/swine/Oklahoma/053259/200... 28.2 1.4
gb|CY045535.1| Influenza A virus (A/swine/Texas/050625/2008(H... 28.2 1.4
gb|CY045527.1| Influenza A virus (A/swine/Texas/050593/2008(H... 28.2 1.4
gb|CY045519.1| Influenza A virus (A/swine/Oklahoma/032726/200... 28.2 1.4
gb|GQ497085.1| Influenza A virus (A/Zhuhai/891/2008(H1N1)) he... 28.2 1.4
gb|GQ497084.1| Influenza A virus (A/Zhuhai/790/2008(H1N1)) he... 28.2 1.4
gb|GQ497083.1| Influenza A virus (A/Zhuhai/753/2008(H1N1)) he... 28.2 1.4
gb|GQ497082.1| Influenza A virus (A/Zhuhai/659/2008(H1N1)) he... 28.2 1.4
gb|GQ497081.1| Influenza A virus (A/Zhuhai/621/2008(H1N1)) he... 28.2 1.4
gb|GQ497080.1| Influenza A virus (A/Zhuhai/159/2008(H1N1)) he... 28.2 1.4
gb|GQ497079.1| Influenza A virus (A/Zhuhai/080/2008(H1N1)) he... 28.2 1.4
gb|GQ497078.1| Influenza A virus (A/Zhuhai/292/2006(H1N1)) he... 28.2 1.4
gb|GQ497077.1| Influenza A virus (A/Zhuhai/119/2006(H1N1)) he... 28.2 1.4
gb|CY045037.1| Influenza A virus (A/New York/3967/2009(H1N1))... 28.2 1.4
gb|CY044684.1| Influenza A virus (A/Boston/52/2008(H1N1)) seg... 28.2 1.4
gb|CY044660.1| Influenza A virus (A/Boston/49/2008(H1N1)) seg... 28.2 1.4
gb|CY044564.1| Influenza A virus (A/Boston/35/2008(H1N1)) seg... 28.2 1.4
gb|CY044556.1| Influenza A virus (A/Boston/34/2008(H1N1)) seg... 28.2 1.4
gb|CY044532.1| Influenza A virus (A/Boston/27/2008(H1N1)) seg... 28.2 1.4
gb|CY044484.1| Influenza A virus (A/Boston/12/2008(H1N1)) seg... 28.2 1.4
gb|CY044421.1| Influenza A virus (A/Managua/4017.02/2008(H1N1... 28.2 1.4
gb|CY044413.1| Influenza A virus (A/Managua/496.01/2008(H1N1)... 28.2 1.4
gb|CY044405.1| Influenza A virus (A/Managua/4070.01/2008(H1N1... 28.2 1.4
gb|CY044389.1| Influenza A virus (A/Managua/4359.01/2008(H1N1... 28.2 1.4
gb|CY044373.1| Influenza A virus (A/Boston/26/2008(H1N1)) seg... 28.2 1.4
gb|CY044349.1| Influenza A virus (A/South Korea/AF10/2008(H1N... 28.2 1.4
gb|CY044341.1| Influenza A virus (A/New Jersey/AF09/2008(H1N1... 28.2 1.4
gb|CY044309.1| Influenza A virus (A/X-127(Puerto Rico/8/1934-... 28.2 1.4
gb|GQ476154.1| Influenza A virus (A/New Mexico/01/2009(H1N1))... 28.2 1.4
gb|GQ476151.1| Influenza A virus (A/Delaware/01/2009(H1N1)) s... 28.2 1.4
gb|GQ476148.1| Influenza A virus (A/New York/64/2009(H1N1)) s... 28.2 1.4
gb|GQ476145.1| Influenza A virus (A/Minnesota/04/2009(H1N1)) ... 28.2 1.4
gb|GQ476142.1| Influenza A virus (A/Vermont/01/2009(H1N1)) se... 28.2 1.4
gb|GQ476139.1| Influenza A virus (A/Alaska/01/2009(H1N1)) seg... 28.2 1.4
gb|GQ476136.1| Influenza A virus (A/Indiana/03/2009(H1N1)) se... 28.2 1.4
gb|GQ476134.1| Influenza A virus (A/Michigan/01/2009(H1N1)) s... 28.2 1.4
gb|GQ476131.1| Influenza A virus (A/Oregon/01/2009(H1N1)) seg... 28.2 1.4
gb|GQ476128.1| Influenza A virus (A/Montana/02/2009(H1N1)) se... 28.2 1.4
gb|GQ476125.1| Influenza A virus (A/Florida/07/2009(H1N1)) se... 28.2 1.4
gb|GQ476123.1| Influenza A virus (A/Indiana/08/2009(H1N1)) se... 28.2 1.4
gb|GQ476120.1| Influenza A virus (A/North Dakota/02/2009(H1N1... 28.2 1.4
gb|GQ476117.1| Influenza A virus (A/Ohio/03/2009(H1N1)) segme... 28.2 1.4
gb|GQ476114.1| Influenza A virus (A/Wisconsin/13/2009(H1N1)) ... 28.2 1.4
gb|GQ476111.1| Influenza A virus (A/Wisconsin/13/2009(H1N1)) ... 28.2 1.4
gb|GQ476108.1| Influenza A virus (A/New York/56/2009(H1N1)) s... 28.2 1.4
gb|GQ476105.1| Influenza A virus (A/Indiana/04/2009(H1N1)) se... 28.2 1.4
gb|GQ476103.1| Influenza A virus (A/Pennsylvania/12/2009(H1N1... 28.2 1.4
gb|GQ476098.1| Influenza A virus (A/Minnesota/01/2009(H1N1)) ... 28.2 1.4
gb|GQ476093.1| Influenza A virus (A/Pennsylvania/01/2009(H1N1... 28.2 1.4
gb|GQ476090.1| Influenza A virus (A/Pennsylvania/01/2009(H1N1... 28.2 1.4
gb|GQ476087.1| Influenza A virus (A/Nebraska/05/2009(H1N1)) s... 28.2 1.4
gb|GQ476084.1| Influenza A virus (A/Tennessee/02/2009(H1N1)) ... 28.2 1.4
gb|GQ476081.1| Influenza A virus (A/Arkansas/02/2009(H1N1)) s... 28.2 1.4
gb|GQ476078.1| Influenza A virus (A/Hawaii/17/2009(H1N1)) seg... 28.2 1.4
gb|GQ476076.1| Influenza A virus (A/Ohio/05/2009(H1N1)) segme... 28.2 1.4
gb|GQ476074.1| Influenza A virus (A/Texas/01/2009(H1N1)) segm... 28.2 1.4
gb|GQ476071.1| Influenza A virus (A/Florida/03/2009(H1N1)) se... 28.2 1.4
gb|GQ476068.1| Influenza A virus (A/Florida/02/2009(H1N1)) se... 28.2 1.4
gb|GQ476066.1| Influenza A virus (A/Pennsylvania/04/2009(H1N1... 28.2 1.4
gb|GQ476063.1| Influenza A virus (A/California/26/2009(H1N1))... 28.2 1.4
gb|GQ476060.1| Influenza A virus (A/Illinois/06/2009(H1N1)) s... 28.2 1.4
gb|GQ476058.1| Influenza A virus (A/Pennsylvania/11/2009(H1N1... 28.2 1.4
gb|GQ476055.1| Influenza A virus (A/Alaska/03/2009(H1N1)) seg... 28.2 1.4
gb|GQ476052.1| Influenza A virus (A/New York/65/2009(H1N1)) s... 28.2 1.4
gb|GQ476049.1| Influenza A virus (A/Massachusetts/04/2009(H1N... 28.2 1.4
gb|GQ476046.1| Influenza A virus (A/Arkansas/01/2009(H1N1)) s... 28.2 1.4
gb|GQ476043.1| Influenza A virus (A/North Carolina/01/2009(H1... 28.2 1.4
gb|GQ476040.1| Influenza A virus (A/Tennessee/04/2009(H1N1)) ... 28.2 1.4
gb|GQ476037.1| Influenza A virus (A/Indiana/01/2009(H1N1)) se... 28.2 1.4
gb|GQ476034.1| Influenza A virus (A/Hawaii/13/2009(H1N1)) seg... 28.2 1.4
gb|GQ476031.1| Influenza A virus (A/Texas/38/2009(H1N1)) segm... 28.2 1.4
gb|GQ476026.1| Influenza A virus (A/Maryland/01/2009(H1N1)) s... 28.2 1.4
gb|GQ476023.1| Influenza A virus (A/Michigan/07/2009(H1N1)) s... 28.2 1.4
gb|GQ476020.1| Influenza A virus (A/Arizona/10/2009(H1N1)) se... 28.2 1.4
gb|GQ476017.1| Influenza A virus (A/Alaska/02/2009(H1N1)) seg... 28.2 1.4
gb|GQ476014.1| Influenza A virus (A/West Virginia/03/2009(H1N... 28.2 1.4
gb|GQ476011.1| Influenza A virus (A/North Dakota/03/2009(H1N1... 28.2 1.4
gb|GQ476008.1| Influenza A virus (A/Virginia/06/2009(H1N1)) s... 28.2 1.4
gb|GQ476005.1| Influenza A virus (A/Wyoming/01/2009(H1N1)) se... 28.2 1.4
gb|GQ476002.1| Influenza A virus (A/Colorado/02/2009(H1N1)) s... 28.2 1.4
gb|GQ475999.1| Influenza A virus (A/Nevada/02/2009(H1N1)) seg... 28.2 1.4
gb|GQ475996.1| Influenza A virus (A/Minnesota/01/2009(H1N1)) ... 28.2 1.4
gb|GQ475993.1| Influenza A virus (A/Nebraska/01/2009(H1N1)) s... 28.2 1.4
gb|GQ475990.1| Influenza A virus (A/Pennsylvania/11/2009(H1N1... 28.2 1.4
gb|GQ475987.1| Influenza A virus (A/Arizona/10/2009(H1N1)) se... 28.2 1.4
gb|GQ475984.1| Influenza A virus (A/New York/66/2009(H1N1)) s... 28.2 1.4
gb|GQ475979.1| Influenza A virus (A/Massachusetts/05/2009(H1N... 28.2 1.4
gb|GQ475976.1| Influenza A virus (A/Oregon/02/2009(H1N1)) seg... 28.2 1.4
gb|GQ475968.1| Influenza A virus (A/New York/63/2009(H1N1)) s... 28.2 1.4
gb|GQ475964.1| Influenza A virus (A/Ohio/06/2009(H1N1)) segme... 28.2 1.4
gb|GQ475961.1| Influenza A virus (A/Montana/01/2009(H1N1)) se... 28.2 1.4
gb|GQ475959.1| Influenza A virus (A/Maryland/04/2009(H1N1)) s... 28.2 1.4
gb|GQ475956.1| Influenza A virus (A/Maryland/03/2009(H1N1)) s... 28.2 1.4
gb|GQ475953.1| Influenza A virus (A/California/02/2009(H1N1))... 28.2 1.4
gb|GQ475950.1| Influenza A virus (A/Kentucky/03/2009(H1N1)) s... 28.2 1.4
gb|GQ475947.1| Influenza A virus (A/Rhode Island/01/2009(H1N1... 28.2 1.4
gb|GQ475944.1| Influenza A virus (A/Washington/03/2009(H1N1))... 28.2 1.4
gb|GQ475942.1| Influenza A virus (A/Pennsylvania/03/2009(H1N1... 28.2 1.4
gb|GQ475939.1| Influenza A virus (A/Montana/03/2009(H1N1)) se... 28.2 1.4
gb|GQ475936.1| Influenza A virus (A/California/26/2009(H1N1))... 28.2 1.4
gb|GQ475933.1| Influenza A virus (A/Indiana/07/2009(H1N1)) se... 28.2 1.4
gb|GQ475930.1| Influenza A virus (A/Ohio/04/2009(H1N1)) segme... 28.2 1.4
gb|GQ475927.1| Influenza A virus (A/Kentucky/08/2009(H1N1)) s... 28.2 1.4
gb|GQ475925.1| Influenza A virus (A/Virginia/03/2009(H1N1)) s... 28.2 1.4
gb|GQ475922.1| Influenza A virus (A/Texas/01/2009(H1N1)) segm... 28.2 1.4
gb|GQ475919.1| Influenza A virus (A/California/03/2009(H1N1))... 28.2 1.4
gb|GQ475916.1| Influenza A virus (A/Hawaii/04/2009(H1N1)) seg... 28.2 1.4
gb|GQ475910.1| Influenza A virus (A/New York/01/2009(H1N1)) s... 28.2 1.4
gb|GQ475907.1| Influenza A virus (A/Kansas/01/2009(H1N1)) seg... 28.2 1.4
gb|GQ475904.1| Influenza A virus (A/Kentucky/01/2009(H1N1)) s... 28.2 1.4
gb|GQ475901.1| Influenza A virus (A/South Dakota/02/2009(H1N1... 28.2 1.4
gb|GQ475899.1| Influenza A virus (A/Indiana/05/2009(H1N1)) se... 28.2 1.4
gb|GQ475896.1| Influenza A virus (A/North Carolina/02/2009(H1... 28.2 1.4
gb|GQ475893.1| Influenza A virus (A/California/01/2009(H1N1))... 28.2 1.4
gb|GQ475890.1| Influenza A virus (A/Wisconsin/01/2009(H1N1)) ... 28.2 1.4
gb|GQ475888.1| Influenza A virus (A/Illinois/05/2009(H1N1)) s... 28.2 1.4
gb|GQ475885.1| Influenza A virus (A/Nebraska/06/2009(H1N1)) s... 28.2 1.4
gb|GQ475882.1| Influenza A virus (A/West Virginia/02/2009(H1N... 28.2 1.4
gb|GQ475879.1| Influenza A virus (A/Tennessee/01/2009(H1N1)) ... 28.2 1.4
gb|GQ475876.1| Influenza A virus (A/New York/62/2009(H1N1)) s... 28.2 1.4
gb|GQ475873.1| Influenza A virus (A/Wisconsin/02/2009(H1N1)) ... 28.2 1.4
gb|GQ475870.1| Influenza A virus (A/Kentucky/08/2009(H1N1)) s... 28.2 1.4
gb|GQ475868.1| Influenza A virus (A/New York/02/2009(H1N1)) s... 28.2 1.4
gb|GQ475866.1| Influenza A virus (A/North Carolina/04/2009(H1... 28.2 1.4
gb|GQ475863.1| Influenza A virus (A/Hawaii/04/2009(H1N1)) seg... 28.2 1.4
gb|GQ475861.1| Influenza A virus (A/Colorado/08/2009(H1N1)) s... 28.2 1.4
gb|GQ475858.1| Influenza A virus (A/Nevada/01/2009(H1N1)) seg... 28.2 1.4
gb|GQ475855.1| Influenza A virus (A/South Dakota/01/2009(H1N1... 28.2 1.4
gb|GQ475852.1| Influenza A virus (A/Wisconsin/04/2009(H1N1)) ... 28.2 1.4
gb|GQ475849.1| Influenza A virus (A/Ohio/01/2009(H1N1)) segme... 28.2 1.4
gb|GQ475846.1| Influenza A virus (A/New Mexico/02/2009(H1N1))... 28.2 1.4
gb|GQ475830.1| Influenza A virus (A/Montana/01/2008(H1N1)) se... 28.2 1.4
gb|GQ475824.1| Influenza A virus (A/Massachusetts/12/2008(H1N... 28.2 1.4
gb|GQ475808.1| Influenza A virus (A/Pennsylvania/14/2008(H1N1... 28.2 1.4
gb|GQ475805.1| Influenza A virus (A/New Jersey/20/2008(H1N1))... 28.2 1.4
gb|GQ475792.1| Influenza A virus (A/Tennessee/03/2008(H1N1)) ... 28.2 1.4
gb|GQ475785.1| Influenza A virus (A/Texas/36/2008(H1N1)) segm... 28.2 1.4
gb|GQ475780.1| Influenza A virus (A/Colorado/17/2008(H1N1)) s... 28.2 1.4
gb|GQ475777.1| Influenza A virus (A/Minnesota/33/2008(H1N1)) ... 28.2 1.4
gb|GQ475774.1| Influenza A virus (A/Texas/32/2008(H1N1)) segm... 28.2 1.4
gb|GQ475771.1| Influenza A virus (A/Florida/28/2008(H1N1)) se... 28.2 1.4
gb|GQ475760.1| Influenza A virus (A/New Jersey/32/2008(H1N1))... 28.2 1.4
gb|GQ475757.1| Influenza A virus (A/New Jersey/30/2008(H1N1))... 28.2 1.4
gb|GQ475754.1| Influenza A virus (A/Hawaii/58/2008(H1N1)) seg... 28.2 1.4
gb|GQ475752.1| Influenza A virus (A/Texas/35/2008(H1N1)) segm... 28.2 1.4
gb|GQ475749.1| Influenza A virus (A/California/11/2008(H1N1))... 28.2 1.4
gb|GQ475730.1| Influenza A virus (A/Maryland/07/2008(H1N1)) s... 28.2 1.4
gb|GQ475727.1| Influenza A virus (A/Pennsylvania/12/2008(H1N1... 28.2 1.4
gb|GQ475724.1| Influenza A virus (A/Virginia/07/2008(H1N1)) s... 28.2 1.4
gb|GQ475714.1| Influenza A virus (A/New Jersey/16/2008(H1N1))... 28.2 1.4
gb|GQ475704.1| Influenza A virus (A/Colorado/08/2008(H1N1)) s... 28.2 1.4
gb|GQ475701.1| Influenza A virus (A/Wisconsin/20/2008(H1N1)) ... 28.2 1.4
gb|GQ475687.1| Influenza A virus (A/New Jersey/06/2008(H1N1))... 28.2 1.4
gb|GQ475683.1| Influenza A virus (A/Texas/23/2008(H1N1)) segm... 28.2 1.4
gb|GQ475681.1| Influenza A virus (A/New Jersey/31/2008(H1N1))... 28.2 1.4
gb|GQ475676.1| Influenza A virus (A/Pennsylvania/15/2008(H1N1... 28.2 1.4
gb|GQ475673.1| Influenza A virus (A/Minnesota/34/2008(H1N1)) ... 28.2 1.4
gb|GQ475655.1| Influenza A virus (A/New Jersey/32/2008(H1N1))... 28.2 1.4
gb|GQ475652.1| Influenza A virus (A/Michigan/10/2008(H1N1)) s... 28.2 1.4
gb|GQ475647.1| Influenza A virus (A/Pennsylvania/15/2008(H1N1... 28.2 1.4
gb|GQ475645.1| Influenza A virus (A/Pennsylvania/14/2008(H1N1... 28.2 1.4
gb|GQ475642.1| Influenza A virus (A/Florida/19/2008(H1N1)) se... 28.2 1.4
gb|GQ475641.1| Influenza A virus (A/Illinois/15/2007(H1N1)) s... 28.2 1.4
gb|GQ475631.1| Influenza A virus (A/Illinois/16/2007(H1N1)) s... 28.2 1.4
gb|GQ466386.1| Influenza A virus (A/Georgia/08/2008(H1N1)) se... 28.2 1.4
gb|GQ466376.1| Influenza A virus (A/Vermont/03/2008(H1N1)) se... 28.2 1.4
gb|GQ466371.1| Influenza A virus (A/North Carolina/07/2008(H1... 28.2 1.4
gb|GQ466367.1| Influenza A virus (A/Hawaii/42/2008(H1N1)) seg... 28.2 1.4

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Commentary

http://www.recombinomics.com/News/02101 ... Swine.html

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Phylogenetic analysis identifies frequent recombination between isolates from this swie herd. All share a large number of synonymous (G291A, A453T, A708G, C748T, G754A, T1023C, A1165G) as well as non-synonymous polymorphisms (A142G, A212G, G408T, G805A, A899G, C995T, C1140T). However appeded to this common genetic background are a number of chnages found in two or more isolates, and the additional polymorphism appear in a variety of combombinations, as seen in pedigrees posted below. The combinations (including RBD changes) signal EXTENSIVE recombination.

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