Rhiza Labs FluTracker Forum

The place to discuss the flu
It is currently Tue May 21, 2013 4:03 pm

View unanswered posts | View active topics


Board index » Discussion » General Discussion

All times are UTC - 5 hours [ DST ]



Post new topic Reply to topic  Page 1 of 2
  [ 18 posts ]  Go to page 1, 2  Next
  Print view Previous topic | Next topic 
Author Message
niman
PostPosted: Thu Jan 13, 2011 9:08 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
CDC has released the sequences (at GISAID) from the two fatal cases (45M & 22M) in Lehigh, PA (A/Pennsylvania/16/2010 & A/Pennsylvania/17/2010). Both have S186P.

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 9:38 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
niman wrote:
CDC has released the sequences (at GISAID) from the two fatal cases (45M & 22M) in Lehigh, PA (A/Pennsylvania/16/2010 & A/Pennsylvania/17/2010). Both have S186P.

Both sequences are IDENTICAL and closely related to UK.

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 9:44 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
CDC released of full set of sequences for PA/17 (45M).

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 9:53 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
T35G

EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI286650 A/India/Srinagar/7/2010 H1N1 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI230123 A/OSAKA/2024/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 9:56 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
A137T
EPI300987 A/Bangladesh/8003/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI298423 A/Shahriar/5336/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI298420 A/Bandar Abbas/5096/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI297253 A/Kobe/91524/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296646 A/Thailand/ST_0153/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296645 A/Thailand/ST_0111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296644 A/Thailand/ST_0113/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296643 A/Thailand/ST_0112_1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296642 A/Thailand/SN_0112_2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295750 A/England/5500192/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295741 A/England/139/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295740 A/England/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295738 A/England/125/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295733 A/England/99/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295732 A/England/4500186/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295731 A/England/93/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295730 A/England/83/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295729 A/England/91/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295728 A/England/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295727 A/England/87/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295725 A/England/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295724 A/England/79/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295519 A/New Hampshire/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295516 A/Bhutan/72/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295385 A/SAGA/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295384 A/CHIBA/23/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294682 A/England/118/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294040 A/NAGANO/2181/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294029 A/YOKOHAMA/84/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI287707 A/Qingdao/1629/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI287706 A/Qingdao/1626/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI286652 A/Stockholm/5/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI281690 A/Alagoas/266/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI281689 A/Alagoas/201/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI281688 A/Alagoas/171/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI281687 A/Alagoas/166/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI281686 A/Alagoas/143/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI281684 A/Alagoas/119/2010 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI280326 A/Wisconsin/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI280286 A/Florida/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI279208 A/CANBERRA/8/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278875 A/India/007/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI273897 A/India/3725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI272392 A/CHIBA-C/22/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI254673 A/Seoul/1870/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI253286 A/Hunan/SWL5/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI253182 A/Shanghai/SWL6/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI249308 A/Wisconsin/629-D01556/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI249292 A/Wisconsin/629-D01244/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI246052 A/YAMAGATA/721/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244041 A/KYOTO/2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI241235 A/Roma/ISS223/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI240603 A/NIIGATA/1371/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI240572 A/ENG/434/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI233085 A/VICTORIA/2131/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI232364 A/Moldova/G-170/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI227842 A/Texas/67/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI227705 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI227701 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI223193 A/Wisconsin/629-D00739/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI218770 A/Wisconsin/629-D01147/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI216612 A/Shanghai/SWL2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215973 A/Moldova/G-170/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI214482 A/Wisconsin/629-D01445/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI214061 A/Toronto/T0106/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI212349 A/Italy/128/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI211994 A/Catalonia/S1169/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI211477 A/North Carolina/28/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI210452 A/Qatar/89/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI210392 A/Ukraine/259/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI194194 A/Michigan/06/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI187706 A/Ancona/04/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI186849 A/Shanghai/60T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 9:58 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
S186P

EPI300987 A/Bangladesh/8003/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI298423 A/Shahriar/5336/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI298420 A/Bandar Abbas/5096/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296646 A/Thailand/ST_0153/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296645 A/Thailand/ST_0111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296644 A/Thailand/ST_0113/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296643 A/Thailand/ST_0112_1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI296642 A/Thailand/SN_0112_2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295750 A/England/5500192/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295741 A/England/139/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295738 A/England/125/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295733 A/England/99/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295731 A/England/93/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295730 A/England/83/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295729 A/England/91/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295728 A/England/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295727 A/England/87/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295725 A/England/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295724 A/England/79/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295519 A/New Hampshire/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295385 A/SAGA/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295384 A/CHIBA/23/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294682 A/England/118/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294040 A/NAGANO/2181/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI294029 A/YOKOHAMA/84/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI288179 A/Belgorod/RII4/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI286652 A/Stockholm/5/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI284314 A/Myanmar/M536/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI280326 A/Wisconsin/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI280286 A/Florida/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI279208 A/CANBERRA/8/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI279016 A/GOROKA/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278875 A/India/007/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278516 A/Ukraine/122/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278514 A/Ukraine/123/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI277042 A/Singapore/478/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI273897 A/India/3725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI272842 A/Qingdao/492/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI272392 A/CHIBA-C/22/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI272008 A/WELLINGTON/1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI269839 A/turkey/Ontario/FAV114-17/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI269838 A/turkey/Ontario/FAV117-1C/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI259196 A/swine/NC/19646/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI257748 A/Jiangxi-Donghu/SWL1172/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI256035 A/Thessaloniki/791/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI252354 A/Ontario/25913/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI246200 A/swine/IL/5265-2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI246197 A/swine/IL/5265-1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244054 A/swine/Illinois/02960/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244053 A/swine/Illinois/02957/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244041 A/KYOTO/2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI238359 A/Chernihiv/857/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI237302 A/California/VRDL7/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI230786 A/Ankara/17/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI230497 A/swine/4/Mexico/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI217181 A/Tennessee/17/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215819 A/DARWIN/2126/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI210034 A/FUKUOKA-C/2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 10:01 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
T933C

EPI300987 A/Bangladesh/8003/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI300975 A/Utah/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI298423 A/Shahriar/5336/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295741 A/England/139/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295733 A/England/99/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295731 A/England/93/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295729 A/England/91/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295728 A/England/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295725 A/England/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295724 A/England/79/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295516 A/Bhutan/72/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295385 A/SAGA/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295384 A/CHIBA/23/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI287707 A/Qingdao/1629/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI287706 A/Qingdao/1626/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI287699 A/Qingdao/1508/2009 (A/H1N1) segment 4 (HA) 27.0 5.92613
EPI280326 A/Wisconsin/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278586 A/Madagascar/95/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278584 A/Madagascar/555/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI278576 A/Madagascar/1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI276478 A/SC/68/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI276267 A/ENG/801/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI272429 A/YOKOSUKA/2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI271323 A/Brussels/INS243/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI270639 A/California/VRDL2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI266007 A/Tver/CRIE-ZC/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI256462 A/Zhejiang/SWL3/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI256398 A/Neimenggu-Hangjinhouqi/SWL54/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI256394 A/Neimenggu-Hangjinhouqi/SWL53/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI256390 A/Neimenggu-Hangjinhouqi/SWL51/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI255178 A/Yaroslavl/IIV-196/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI253731 A/Berlin/121/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI253058 A/Texas/JMS411/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI247802 A/Wisconsin/629-D00128/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI247058 A/Delhi/NIV3704/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI246884 A/New York/6810/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI245191 A/Australia/80/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI245135 A/Australia/66/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI245047 A/Australia/53/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244991 A/Australia/42/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244975 A/Australia/39/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI244892 A/Australia/25/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI243775 A/Tanzania/393/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI240758 A/Pavia/8/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI236982 A/Australia/6/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI234474 A/Shandong/SWL4116/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI233070 A/WELLINGTON/232/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI232991 A/OKAYAMA/17/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI227827 A/St Petersburg/03/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI223369 A/Texas/43292238/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI222789 A/Nagasaki/HA-57/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI221364 A/Nagasaki/HA-63/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI219295 A/Zhejiang/DTID-ZJU03/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI218519 A/Texas/43242018/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI217175 A/Tanzania/393/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI217173 A/Tanzania/386/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI217170 A/Tanzania/381/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215908 A/NEW CALEDONIA/22/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215767 A/EAST TIMOR/2003/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215754 A/DARWIN/2128/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI215707 A/SYDNEY/2501/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI214870 A/Zhejiang/DTID-ZJU02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI214865 A/Zhejiang-Yiwu/11/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI212307 A/Hangzhou/1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI194170 A/Iraq/10249/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI194164 A/Iraq/0251/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613

_________________
www.twitter.com/hniman
Top
 Profile  
 
ReadyMom
PostPosted: Thu Jan 13, 2011 11:07 pm 
Offline
User avatar

Joined: Fri Oct 09, 2009 8:18 pm
Posts: 154
Location: Central Pennsylvania
Can you please explain to me 'sequences'.
Quote:
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613


What is EP1295501?
A is the strain
Pennsylvania is the location of the case
17 must be the number of the case
2010 is the yr

I don't understand the rest.

Do they all read like a map in the list tracking transmission? (So sorry for being so ignorant of all this :blush: ). -k
Top
 Profile  
 
niman
PostPosted: Thu Jan 13, 2011 11:27 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
ReadyMom wrote:
Can you please explain to me 'sequences'.
Quote:
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.92613


What is EP1295501?
A is the strain
Pennsylvania is the location of the case
17 must be the number of the case
2010 is the yr

I don't understand the rest.

Do they all read like a map in the list tracking transmission? (So sorry for being so ignorant of all this :blush: ). -k

EPI1295501 is the accession number
A/H1N1 is the serotype
swl is the lineage - "swl" stands for swine-like, which is science for pandemic H1N1
segment 4 is HA
HA is hemagglutinin

The numbers at the end have to do with the strengency of the search

Those is a given list are all sequences in the database that share a given polymorphism ("mutation") as well as identity adjacent to the "mutation".

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jan 14, 2011 7:12 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27337
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/01141 ... UK_US.html

_________________
www.twitter.com/hniman
Top
 Profile  
 
Display posts from previous:  Sort by  
Post new topic Reply to topic  Page 1 of 2
  [ 18 posts ]  Go to page 1, 2  Next

Board index » Discussion » General Discussion

All times are UTC - 5 hours [ DST ]

Who is online

Users browsing this forum: meteorjosh, niman and 22 guests

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
Powered by phpBB® Forum Software © phpBB Group