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LOCUS HQ712173 1701 bp cRNA linear VRL 25-DEC-2010 DEFINITION Influenza A virus (A/Karaj/5327/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION HQ712173 VERSION HQ712173.1 GI:315227488 DBLINK Project: 37813 KEYWORDS . SOURCE Influenza A virus (A/Karaj/5327/2010(H1N1)) ORGANISM Influenza A virus (A/Karaj/5327/2010(H1N1)) Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Mokhtari Azad,T., Shafiei Jandaghi,N.Z. and Rezaei,F. TITLE Direct Submission JOURNAL Submitted (16-DEC-2010) Virology, National Influenza Centre, School of Public Health and Institute of Public Health Research, Tehran University of Medical Sciences, Tehran, Iran COMMENT Swine influenza A (H1N1) virus isolated during human swine flu outbreak of 2009-2010. FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/Karaj/5327/2010(H1N1))" /mol_type="viral cRNA" /strain="A/Karaj/5327/2010" /serotype="H1N1" /host="Homo sapiens" /db_xref="taxon:937248" /segment="4" /country="Iran" /collection_date="06-Dec-2010" /note="lineage: swl" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="ADT91183.1" /db_xref="GI:315227489" /translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKG FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTTADQQSLYQNADTYVFV GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKI TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER TLDYHDSNVKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI " ORIGIN 1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta 61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat 121 gtaacagtaa cacactctgt taatcttcta gaagacaagc ataacgggaa actatgcaaa 181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga 241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct 301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag 361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg 421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaggc 481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa 541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct 601 actactgctg accaacaaag tctctatcag aatgcagata catatgtttt tgtggggaca 661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa 721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa 781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct 841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag 901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt 961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct 1021 attcaatcta gaggcctatt tggggccatt gccggcttca ttgaaggggg gtggacaggg 1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc 1141 gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt 1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga 1261 atagagaatt taaataaaaa agttgatgat ggtttcctgg acatttggac ttacaatgcc 1321 gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag 1381 aacttatatg aaaaggtaag aaaccagtta aaaaacaatg ccaaggaaat tggaaatggc 1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact 1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta 1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca 1621 ttggtactgg tagtctccct gggggcaatc agtttttgga tgtgctctaa tgggtctcta 1681 cagtgtagaa tatgtattta a
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