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niman
PostPosted: Tue Dec 14, 2010 1:05 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
niman wrote:
T1056C pedigree

EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI283084 A/Washington/AF2678/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI283083 A/Washington/AF2677/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281935 A/Newark/INS318/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281793 A/Texas/AF2643/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281792 A/Texas/AF2642/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281791 A/Texas/AF2641/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281790 A/Texas/AF2640/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281788 A/Texas/AF2638/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281784 A/Texas/AF2634/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281783 A/Texas/AF2633/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281782 A/Texas/AF2632/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281779 A/South Carolina/AF2571/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281777 A/South Carolina/AF2569/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281775 A/South Carolina/AF2567/2010 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281762 A/Texas/AF2629/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281759 A/Texas/AF2626/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281758 A/Texas/AF2625/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281757 A/Texas/AF2624/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281755 A/Texas/AF2622/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281754 A/Texas/AF2621/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281753 A/Texas/AF2620/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI281752 A/Texas/AF2619/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278854 A/Panama/307207/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278852 A/Panama/307168/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278332 A/Oklahoma/AF2542/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278329 A/Oklahoma/AF2539/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278309 A/Ohio/AF2519/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278286 A/Nevada/AF2496/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278265 A/Mississippi/AF2475/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278264 A/Mississippi/AF2474/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278238 A/Louisiana/AF2448/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278237 A/Louisiana/AF2447/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278234 A/Louisiana/AF2444/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278233 A/Louisiana/AF2443/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278232 A/Louisiana/AF2442/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278227 A/Louisiana/AF2437/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276890 A/Japan/AF2325/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276829 A/Japan/AF2293/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276825 A/Japan/AF2289/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276821 A/Japan/AF2285/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276620 A/Florida/AF2198/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276619 A/Florida/AF2197/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276617 A/Florida/AF2195/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276611 A/Florida/AF2189/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276565 A/ENG/1055/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276244 A/California/AF2137/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276239 A/Alabama/AF2072/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276232 A/Alabama/AF2065/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276231 A/Alabama/AF2064/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276223 A/Connecticut/AF2150/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276216 A/Colorado/AF2143/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276203 A/California/AF2128/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273934 A/Kentucky/07/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273848 A/Georgia/11/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273841 A/Florida/07/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273808 A/Wisconsin/05/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273802 A/Alabama/04/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273765 A/Florida/03/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273754 A/Tennessee/02/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273686 A/Kentucky/02/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273659 A/Arizona/05/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI273653 A/California/08/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI271006 A/Vienna/INS291/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI270687 A/California/VRDL9/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI270607 A/California/VRDL131/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI270567 A/California/VRDL126/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI270399 A/California/VRDL105/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI267752 A/New York/4662/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI258566 A/California/VRDL91/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI258518 A/California/VRDL13/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI258502 A/California/VRDL11/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI258470 A/California/VRDL10/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI257936 A/Hubei-Maojian/SWL197/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI254109 A/Texas/JMS403/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI254093 A/Texas/JMS400/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI253050 A/Texas/JMS410/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI253018 A/Texas/JMS406/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI253010 A/Texas/JMS405/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252994 A/Texas/JMS402/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252986 A/Texas/JMS399/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252978 A/Texas/JMS398/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252970 A/Texas/JMS397/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252914 A/Texas/JMS389/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252586 A/Pensacola/INS107/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252322 A/Ontario/222656/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252180 A/Georgia/06/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252062 A/Louisiana/01/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI250048 A/Kentucky/02/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI248542 A/SHIZUOKA-C/270/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247649 A/New York/5186/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247494 A/Washington/73/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247459 A/Utah/01/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247322 A/Iowa/03/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247314 A/Indiana/01/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247307 A/Idaho/17/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247249 A/Colorado/02/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247245 A/California/04/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247242 A/California/03/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247165 A/Alabama/02/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI246980 A/San Diego/INS63/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI246876 A/New York/6809/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI246572 A/New York/5083/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI246540 A/New York/4990/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI244275 A/TOCHIGI/471/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI243805 A/NIIGATA-C/106/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI243789 A/Oregon/37/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI240618 A/YOKOHAMA/1545/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI240593 A/HIROSHIMA-C/399/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI240362 A/Maine/14/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI240334 A/Hawaii/29/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI239676 A/Hawaii/29/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI234617 A/YOKOSUKA/2/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI234432 A/cat/OR/29573/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI233005 A/HIROSHIMA/590/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI232990 A/NIIGATA/1356/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI232989 A/NIIGATA/1266/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI232983 A/HIROSHIMA/478/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI232949 A/YOKOHAMA/1340/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI232934 A/NAGANO-C/73/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI231283 A/Oregon/35/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI230121 A/NIIGATA/1459/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI227734 A/Nevada/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI227666 A/Oregon/35/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI221172 A/Tennessee/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217075 A/Oregon/33/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI215474 A/Taiwan/T0826/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI214045 A/Toronto/R8557/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI186038 A/Singapore/ON226/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000

Updated sequences with T1056C below, which includes MO/04/06 in bold an H1N1 TRIPLE REASSORTANT

EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294306 A/PERTH/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI292019 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292018 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292017 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292014 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292012 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292009 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292008 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI292007 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 4 (HA) 27.0 5.70242
EPI291852 A/Missouri/04/2006 (A/H1N1) segment 4 (HA) 27.0 5.70242

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niman
PostPosted: Tue Dec 14, 2010 1:08 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
G1403A pedigree

EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI282903 A/Silver Spring/WRAIRSP510P20/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI282887 A/Silver Spring/WRAIRSP510P18/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI282879 A/Silver Spring/WRAIRSP510P12/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI282871 A/Silver Spring/WRAIRSP510P10/2009 (A/H1N1) segment 4 (HA) 52.8 0.00000
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI279147 A/CAMBODIA/9/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276529 A/ENG/864/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276525 A/ENG/94840760/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276495 A/SC/76/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276468 A/SC/65/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276460 A/SC/55/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276404 A/ENG/760/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276360 A/ENG/995/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI276303 A/ENG/1008/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI274825 A/Guam/NHRC0008/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI271435 A/Pensacola/INS210/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI271211 A/Athens/INS264/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI271147 A/Aarhus/INS254/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI259399 A/Cologne/INS136/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI258366 A/Athens/INS160/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI253825 A/Niedersachsen/866/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI253791 A/Nordrhein-Westfalen/152/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI252338 A/Ontario/237882/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247424 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247396 A/North Carolina/01/2010 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247095 A/Pune/NIV9355/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247069 A/Pune/NIV10278/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI247044 A/Blore/NIV236/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI246724 A/New York/6182/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI244044 A/Myanmar/JP-I-438/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI244042 A/Myanmar/JP-I-412/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI243930 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI243861 A/Mississippi/09/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI233074 A/VICTORIA/2081/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI223648 A/Texas/45131774/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI221282 A/Catalonia/S1827/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217432 A/Catalonia/S1751/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217429 A/Catalonia/S1748/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217108 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217105 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217058 A/New York/101/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI217017 A/Nevada/14/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI216987 A/Mississippi/02/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI215878 A/YAP/2020/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI215643 A/YAP/2033/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI194119 A/Brazil/2303/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI190887 A/Silver Spring/SP510/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI184801 A/Sao Paulo/2303/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI184797 A/Catalonia/394/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI182994 A/Finland/554/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000
EPI181733 A/Milan/UHSR1/2009 (A/H1N1 swl) segment 4 (HA) 52.8 0.00000

The above pedigree is for S454N.

G1403A update:

EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294306 A/PERTH/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.70242

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niman
PostPosted: Tue Dec 14, 2010 2:15 pm 
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Posts: 27279
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Commentary

http://www.recombinomics.com/News/12141 ... scape.html

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niman
PostPosted: Thu Dec 16, 2010 1:45 pm 
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Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/12161 ... el_LR.html

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niman
PostPosted: Mon Dec 20, 2010 1:36 pm 
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Posts: 27279
Location: Pittsburgh, PA USA
S188T in UK

EPI294674 A/England/4880374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI284010 A/Thailand/34-9937/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI284007 A/Thailand/34-9912/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI255118 A/swine/Thailand/CU-RA75/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073

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niman
PostPosted: Mon Dec 20, 2010 1:55 pm 
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Joined: Wed Aug 19, 2009 10:42 am
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T1056C

EPI294674 A/England/4880374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294306 A/PERTH/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI292019 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292018 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292017 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292014 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292012 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292009 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292008 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI292007 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI291852 A/Missouri/04/2006 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI288194 A/Boston/591/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI283084 A/Washington/AF2678/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI283083 A/Washington/AF2677/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281935 A/Newark/INS318/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281793 A/Texas/AF2643/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281792 A/Texas/AF2642/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281791 A/Texas/AF2641/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281790 A/Texas/AF2640/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281788 A/Texas/AF2638/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281784 A/Texas/AF2634/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281783 A/Texas/AF2633/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281782 A/Texas/AF2632/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281779 A/South Carolina/AF2571/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281777 A/South Carolina/AF2569/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281775 A/South Carolina/AF2567/2010 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281762 A/Texas/AF2629/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281759 A/Texas/AF2626/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281758 A/Texas/AF2625/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281757 A/Texas/AF2624/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281755 A/Texas/AF2622/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281754 A/Texas/AF2621/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281753 A/Texas/AF2620/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281752 A/Texas/AF2619/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI281264 A/swine/Nebraska/02013/2008 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI280410 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278854 A/Panama/307207/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278852 A/Panama/307168/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278332 A/Oklahoma/AF2542/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278331 A/Oklahoma/AF2541/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278329 A/Oklahoma/AF2539/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278309 A/Ohio/AF2519/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278286 A/Nevada/AF2496/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278265 A/Mississippi/AF2475/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278264 A/Mississippi/AF2474/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278238 A/Louisiana/AF2448/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278237 A/Louisiana/AF2447/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278234 A/Louisiana/AF2444/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278233 A/Louisiana/AF2443/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278232 A/Louisiana/AF2442/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278227 A/Louisiana/AF2437/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276890 A/Japan/AF2325/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276829 A/Japan/AF2293/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276825 A/Japan/AF2289/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276821 A/Japan/AF2285/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276620 A/Florida/AF2198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276619 A/Florida/AF2197/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276617 A/Florida/AF2195/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276611 A/Florida/AF2189/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276565 A/ENG/1055/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276244 A/California/AF2137/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276239 A/Alabama/AF2072/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276232 A/Alabama/AF2065/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276231 A/Alabama/AF2064/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276223 A/Connecticut/AF2150/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276216 A/Colorado/AF2143/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276203 A/California/AF2128/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273934 A/Kentucky/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273848 A/Georgia/11/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273841 A/Florida/07/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273808 A/Wisconsin/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273802 A/Alabama/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273765 A/Florida/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273754 A/Tennessee/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273686 A/Kentucky/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273659 A/Arizona/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI273653 A/California/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI271006 A/Vienna/INS291/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI270687 A/California/VRDL9/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI270607 A/California/VRDL131/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI270567 A/California/VRDL126/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI270399 A/California/VRDL105/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI267993 A/duck/Hunan/908/2005 (A/H6N2) segment 4 (HA) 27.0 5.71073
EPI267992 A/chicken/Hunan/989/2005 (A/H6N2) segment 4 (HA) 27.0 5.71073
EPI267752 A/New York/4662/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI258566 A/California/VRDL91/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI258518 A/California/VRDL13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI258502 A/California/VRDL11/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI258470 A/California/VRDL10/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI257936 A/Hubei-Maojian/SWL197/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI255761 A/swine/MN/48683/2002 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI254109 A/Texas/JMS403/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI254093 A/Texas/JMS400/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI253050 A/Texas/JMS410/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI253018 A/Texas/JMS406/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI253010 A/Texas/JMS405/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252994 A/Texas/JMS402/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252986 A/Texas/JMS399/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252978 A/Texas/JMS398/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252970 A/Texas/JMS397/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252914 A/Texas/JMS389/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252586 A/Pensacola/INS107/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252322 A/Ontario/222656/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252180 A/Georgia/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252062 A/Louisiana/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI250048 A/Kentucky/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI248554 A/NIIGATA/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI248542 A/SHIZUOKA-C/270/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247649 A/New York/5186/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247494 A/Washington/73/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247459 A/Utah/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247322 A/Iowa/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247314 A/Indiana/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247307 A/Idaho/17/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247249 A/Colorado/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247245 A/California/04/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247242 A/California/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247165 A/Alabama/02/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247155 A/duck/Jiangsu/022/2009 (A/H6N6) segment 4 (HA) 27.0 5.71073
EPI246980 A/San Diego/INS63/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI246876 A/New York/6809/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI246572 A/New York/5083/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI246540 A/New York/4990/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI246145 A/Yamagata/13/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 5.71073
EPI244275 A/TOCHIGI/471/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI243805 A/NIIGATA-C/106/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI243789 A/Oregon/37/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI240618 A/YOKOHAMA/1545/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI240593 A/HIROSHIMA-C/399/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI240362 A/Maine/14/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI240334 A/Hawaii/29/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI239676 A/Hawaii/29/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI234617 A/YOKOSUKA/2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI234432 A/cat/OR/29573/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI233005 A/HIROSHIMA/590/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI232990 A/NIIGATA/1356/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI232989 A/NIIGATA/1266/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI232983 A/HIROSHIMA/478/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI232949 A/YOKOHAMA/1340/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI232934 A/NAGANO-C/73/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI231283 A/Oregon/35/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI231209 A/spot-billed duck/Korea/619/2008 (A/H6N2) segment 4 (HA) 27.0 5.71073
EPI230121 A/NIIGATA/1459/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI230034 A/swine/Wisconsin/R33f/2001 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI227734 A/Nevada/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI227666 A/Oregon/35/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI226734 A/Iowa/CEID23/2005 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI221172 A/Tennessee/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI220545 A/ferret/Iowa/15828B/2008 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI217075 A/Oregon/33/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI215603 A/Beijing-Huairou/1117/2008 (A/H1N1 seasonal) segment 4 (HA) 27.0 5.71073
EPI215474 A/Taiwan/T0826/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI214045 A/Toronto/R8557/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI186038 A/Singapore/ON226/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI181234 A/swine/Granstedt/IDT3475/2004 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI180200 A/swine/North Carolina/41621/2003 (A/H1) segment 4 (HA) 27.0 5.71073
EPI163982 A/swine/Korea/CAS08/2005 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI163981 A/swine/Korea/CAN01/2004 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI124042 A/swine/Iowa/00239/2004 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI71877 A/Texas/UR06-0540/2007 (A/H1N1 seasonal) segment 4 (HA) 27.0 5.71073
EPI15268 A/Swine/Korea/CY02/02 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI14856 A/SW/MO/1877/01 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI14850 A/SW/CO/17871/01 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI14832 A/SW/MN/3227/00 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI14828 A/SW/MN/16356/01 (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI14694 A/Swine/Minnesota/1713/00/ (A/H1N2) segment 4 (HA) 27.0 5.71073
EPI9345 A/Swine/Iowa/930/01 (A/H1N2) segment 4 (HA) 27.0 5.71073

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PostPosted: Mon Dec 20, 2010 2:01 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
G1403A

EPI294674 A/England/4880374/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294417 A/VICTORIA/670/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294391 A/SYDNEY/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294388 A/SYDNEY/220/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294306 A/PERTH/219/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294297 A/PERTH/198/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294282 A/BRISBANE/209/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294195 A/BRISBANE/69/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI294115 A/VICTORIA/833/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI287020 A/Ghana/FS-10-4259/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI287018 A/Ghana/FS-10-4241/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286992 A/Johannesburg/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI286990 A/Johannesburg/115/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI282903 A/Silver Spring/WRAIRSP510P20/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI282887 A/Silver Spring/WRAIRSP510P18/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI282879 A/Silver Spring/WRAIRSP510P12/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI282871 A/Silver Spring/WRAIRSP510P10/2009 (A/H1N1) segment 4 (HA) 27.0 5.71073
EPI280311 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI280289 A/Florida/14/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279147 A/CAMBODIA/9/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279083 A/CHRISTCHURCH/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI279064 A/VICTORIA/512/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278873 A/India/8910/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI278871 A/India/5107/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276529 A/ENG/864/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276525 A/ENG/94840760/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276495 A/SC/76/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276468 A/SC/65/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276460 A/SC/55/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276404 A/ENG/760/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276360 A/ENG/995/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI276303 A/ENG/1008/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI274825 A/Guam/NHRC0008/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI271435 A/Pensacola/INS210/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI271211 A/Athens/INS264/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI271147 A/Aarhus/INS254/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI259399 A/Cologne/INS136/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI258366 A/Athens/INS160/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI253825 A/Niedersachsen/866/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI253791 A/Nordrhein-Westfalen/152/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI252338 A/Ontario/237882/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247424 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247396 A/North Carolina/01/2010 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247095 A/Pune/NIV9355/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247069 A/Pune/NIV10278/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI247044 A/Blore/NIV236/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI246724 A/New York/6182/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI244044 A/Myanmar/JP-I-438/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI244042 A/Myanmar/JP-I-412/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI243930 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI243861 A/Mississippi/09/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI233074 A/VICTORIA/2081/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI223648 A/Texas/45131774/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI221282 A/Catalonia/S1827/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217432 A/Catalonia/S1751/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217429 A/Catalonia/S1748/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217108 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217105 A/South Carolina/18/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217058 A/New York/101/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI217017 A/Nevada/14/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI216987 A/Mississippi/02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI215878 A/YAP/2020/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI215643 A/YAP/2033/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI194119 A/Brazil/2303/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI190887 A/Silver Spring/SP510/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI184801 A/Sao Paulo/2303/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI184797 A/Catalonia/394/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI182994 A/Finland/554/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073
EPI181733 A/Milan/UHSR1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 5.71073

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niman
PostPosted: Thu Jan 06, 2011 4:51 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
S188T (labeled as S185T) in withheld sequences from UK

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