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PostPosted: Thu Dec 04, 2014 7:24 am 
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Posts: 56044
Location: Pittsburgh, PA USA
EMC has released H5 and N8 November sequences from 2 Eurasian wigeons from Woerden, Netherlands at GISAID

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PostPosted: Thu Dec 04, 2014 7:29 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Isolate name:
A/eurasian wigeon/Netherlands/emc-2/2014
Isolate ID:
EPI_ISL_168747
Passage details/history:
original material
Type:
A / H5N8
Lineage:

Sample information
Collection date:
2014-11-24
Host
Anas penelope
Additional host information:

Domestic status:
Wild
Is vaccinated:
N
Location:
Netherlands / Provincie Utrecht / Gemeente Woerden
Additional location information:
Between Kamerik and Kockengen
Health status:
Healthy
Specimen source:
Feces
Strain or commercial product name used for vaccination:

Institute information
Originating lab:
Erasmus Medical Center

Sample ID given by the sample provider:
C285-45
Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

Submitting lab:
Erasmus Medical Center

Sample ID given by the submitting laboratory:
C285-45
Authors:
Fouchier, Ron A.M.;
Verhagen, Josanne H.;
Vuong, Oanh;
Bestebroer, Theo;
Van Vliet, Stefan;
Van der Jeugd, Henk

Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

Publication
Publication
In vivo antiviral resistance
Phenotype
Genotype
Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:
Unknown
Oseltamivir:
Unknown
Zanamivir:
Unknown
Peramivir:
Unknown
Other:
Unknown










Additional information
Antigenic characterization:

Note:

Sequence
segment identifier length accession # INSDC Sequence

HA
A/eurasian wigeon/Netherlands/emc-2/2014
1666
EPI551149


NA
A/eurasian wigeon/Netherlands/emc-2/2014
1385
EPI551150

Submitter information
Submitter:
Verhagen, Josanne
Submission Date:
2014-12-04
Last modifier:
Verhagen, Josanne
Last modified:
2014-12-04
Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

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PostPosted: Thu Dec 04, 2014 7:35 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 3077.6 0.000000e+00 1666/1666 (100%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1659/1667 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1657/1667 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1657/1667 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1657/1667 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1657/1667 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 3016.7 0.000000e+00 1656/1667 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 2994.5 0.000000e+00 1652/1667 (99%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 2983.5 0.000000e+00 1650/1667 (98%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1647/1667 (98%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1647/1667 (98%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1597/1603 (99%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 2837.6 0.000000e+00 1585/1609 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 2821.0 0.000000e+00 1581/1609 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 2815.4 0.000000e+00 1582/1610 (98%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2754.5 0.000000e+00 1610/1668 (96%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2748.9 0.000000e+00 1607/1665 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2732.3 0.000000e+00 1606/1668 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2717.5 0.000000e+00 1600/1663 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2712.0 0.000000e+00 1601/1666 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2695.4 0.000000e+00 1596/1663 (95%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2678.8 0.000000e+00 1595/1666 (95%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2667.7 0.000000e+00 1596/1670 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2662.1 0.000000e+00 1595/1670 (95%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2656.6 0.000000e+00 1591/1666 (95%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2654.8 0.000000e+00 1590/1665 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2651.1 0.000000e+00 1590/1666 (95%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2649.2 0.000000e+00 1589/1665 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 2640.0 0.000000e+00 1591/1670 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2640.0 0.000000e+00 1584/1660 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2634.4 0.000000e+00 1591/1671 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2634.4 0.000000e+00 1591/1671 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 2634.4 0.000000e+00 1591/1671 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 2634.4 0.000000e+00 1591/1671 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2634.4 0.000000e+00 1588/1667 (95%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2630.7 0.000000e+00 1588/1668 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 2628.9 0.000000e+00 1590/1671 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2595.7 0.000000e+00 1578/1664 (94%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 2568.0 0.000000e+00 1574/1665 (94%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 2564.3 0.000000e+00 1574/1665 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 2562.4 0.000000e+00 1573/1665 (94%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 2553.2 0.000000e+00 1574/1668 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 2545.8 0.000000e+00 1576/1671 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 2540.3 0.000000e+00 1574/1670 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 2501.5 0.000000e+00 1563/1666 (93%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 2497.8 0.000000e+00 1561/1663 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 2451.6 0.000000e+00 1551/1662 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1551/1663 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1550/1662 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1550/1662 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1550/1662 (93%)
EPI107829 A/goose/Guiyang/1304/2006 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1550/1662 (93%)
EPI107771 A/chicken/Guangxi/463/2006 (A/H5N1) segment 4 (HA) 2446.1 0.000000e+00 1550/1662 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI108331 A/goose/Guangxi/1633/2006 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI108329 A/goose/Guangxi/1898/2006 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI108327 A/duck/Guangxi/1830/2006 (A/H5N1) segment 4 (HA) 2440.5 0.000000e+00 1549/1662 (93%)
EPI399886 A/duck/HuBei/03/2010 (A/H5N5) segment 4 (HA) 2435.0 0.000000e+00 1549/1663 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI280104 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1549/1663 (93%)
EPI275774 A/chicken/Hunan/21/2005 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1549/1663 (93%)
EPI227309 A/Mallard/Huadong/lk/2005 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI181301 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1538/1647 (93%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1538/1647 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1549/1663 (93%)
EPI97209 A/Duck/Fujian/1734/05 (A/H5N1) segment 4 (HA) 2435.0 0.000000e+00 1548/1662 (93%)
EPI107865 A/duck/Hunan/856/2006 (A/H5N1) segment 4 (HA) 2433.2 0.000000e+00 1547/1661 (93%)
EPI107803 A/duck/Guiyang/3996/2005 (A/H5N1) segment 4 (HA) 2433.2 0.000000e+00 1546/1659 (93%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI337107 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI280112 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI275386 A/Anhui/2/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI181299 A/Fujian/1/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI170615 A/chicken/Vietnam/216/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI170607 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI170599 A/duck/Vietnam/218/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI170591 A/duck/Vietnam/219/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI164250 A/Fujian/1/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI108337 A/duck/Guangxi/1436/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI108333 A/chicken/Guangxi/1951/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI107831 A/duck/Guiyang/1418/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI107799 A/chicken/Guiyang/3721/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI107755 A/duck/Guangxi/5270/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI107753 A/duck/Guangxi/5165/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI107741 A/duck/Guangxi/4428/2005 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1547/1662 (93%)
EPI106243 A/duck/Laos/3295/2006 (A/H5N1) segment 4 (HA) 2429.5 0.000000e+00 1548/1663 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 2423.9 0.000000e+00 1547/1663 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 2423.9 0.000000e+00 1547/1663 (93%)
EPI275958 A/duck/Anhui/1/06 (A/H5N1) segment 4 (HA) 2423.9 0.000000e+00 1549/1665 (93%)
EPI275870 A/chicken/Sichuan/81/2005 (A/H5N1) segment 4 (HA) 2423.9 0.000000e+00 1546/1662 (93%)

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PostPosted: Thu Dec 04, 2014 7:39 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI551150 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1385/1385 (100%)
EPI547683 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1383/1385 (99%)
EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1383/1385 (99%)
EPI548626 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1382/1385 (99%)
EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1381/1385 (99%)
EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1381/1385 (99%)
EPI547675 A/duck/England/36254/14 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1381/1385 (99%)
EPI551144 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1375/1377 (99%)
EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1380/1385 (99%)
EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1380/1385 (99%)
EPI542632 A/mallard/Korea/W452/2014 (A/H5N8) segment 6 (NA) 2520.0 0.000000e+00 1378/1385 (99%)
EPI543012 A/duck/Beijing/CT01/2014 (A/H5N8) segment 6 (NA) 2514.4 0.000000e+00 1377/1385 (99%)
EPI517163 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 6 (NA) 2514.4 0.000000e+00 1377/1385 (99%)
EPI543004 A/duck/Beijing/FS01/2014 (A/H5N8) segment 6 (NA) 2508.9 0.000000e+00 1376/1385 (99%)
EPI542627 A/duck/Beijing/FS01/2013 (A/H5N8) segment 6 (NA) 2460.9 0.000000e+00 1360/1376 (98%)
EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1358/1385 (98%)
EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1355/1385 (97%)
EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1354/1385 (97%)
EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1353/1385 (97%)
EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1353/1385 (97%)
EPI485330 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 6 (NA) 2126.6 0.000000e+00 1309/1387 (94%)
EPI132266 A/duck/Eastern China/90/2004 (A/H3N8) segment 6 (NA) 2115.5 0.000000e+00 1307/1387 (94%)
EPI132262 A/duck/Eastern China/19/2004 (A/H3N8) segment 6 (NA) 2104.5 0.000000e+00 1305/1387 (94%)
EPI326921 A/environment/Korea/SH12-6/2008 (A/H3N8) segment 6 (NA) 2093.4 0.000000e+00 1302/1386 (93%)
EPI387415 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 6 (NA) 2065.7 0.000000e+00 1276/1354 (94%)
EPI416940 A/duck/Vietnam/OIE-2577/2011 (A/H3N8) segment 6 (NA) 2063.8 0.000000e+00 1297/1386 (93%)
EPI326920 A/environment/Korea/SH12-8/2008 (A/H3N8) segment 6 (NA) 2052.7 0.000000e+00 1280/1364 (93%)
EPI438257 A/duck/Vietnam/G18-1/2011 (A/H3N8) segment 6 (NA) 2047.2 0.000000e+00 1294/1386 (93%)
EPI387510 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 6 (NA) 2043.5 0.000000e+00 1272/1354 (93%)
EPI387494 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 6 (NA) 2038.0 0.000000e+00 1271/1354 (93%)
EPI363489 A/duck/Guangxi/2736/2006 (A/H6N8) segment 6 (NA) 2010.3 0.000000e+00 1288/1387 (92%)
EPI485320 A/ruddy shelduck/Mongolia/1787/2011 (A/H3N8) segment 6 (NA) 1953.0 0.000000e+00 1268/1370 (92%)
EPI485328 A/common shelduck/Mongolia/2076/2011 (A/H3N8) segment 6 (NA) 1821.9 0.000000e+00 1236/1358 (91%)
EPI128912 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1727.7 0.000000e+00 1243/1393 (89%)
EPI407886 A/duck/Ukraine/1963 (A/H3N8) segment 6 (NA) 1711.1 0.000000e+00 1241/1394 (89%)
EPI251642 A/mallard/Netherlands/10/1999 (A/H1N8) segment 6 (NA) 1711.1 0.000000e+00 1207/1345 (89%)
EPI42182 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1711.1 0.000000e+00 1241/1394 (89%)
EPI3107 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1705.6 0.000000e+00 1240/1394 (88%)
EPI132460 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1700.0 0.000000e+00 1239/1394 (88%)
EPI128904 A/duck/Burjatia/652/1988 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1229/1396 (88%)
EPI2999 A/duck/Hong Kong/438/1977 (A/H4N8) segment 6 (NA) 1633.6 0.000000e+00 1227/1394 (88%)
EPI182043 A/common eider/Netherlands/1/2006 (A/H3N8) segment 6 (NA) 1628.0 0.000000e+00 1225/1393 (87%)
EPI339175 A/mallard/Germany-BY/R1353/2010 (A/H6N8) segment 6 (NA) 1622.5 0.000000e+00 1221/1390 (87%)
EPI336006 A/teal/Chany/444/2009 (A/H8N8) segment 6 (NA) 1622.5 0.000000e+00 1225/1394 (87%)
EPI316502 A/duck/Hubei/126/1985 (A/H7N8) segment 6 (NA) 1622.5 0.000000e+00 1227/1396 (87%)
EPI251715 A/mallard/Sweden/45/2002 (A/H11N8) segment 6 (NA) 1622.5 0.000000e+00 1223/1392 (87%)
EPI398948 A/mallard/Norway/10_779/2009 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1223/1393 (87%)
EPI372503 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1221/1391 (87%)
EPI339174 A/goose/Germany/R1767/2007 (A/H6N8) segment 6 (NA) 1616.9 0.000000e+00 1221/1391 (87%)
EPI316762 A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1220/1390 (87%)
EPI314410 A/mallard/Czech Republic/14516/2007 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1220/1390 (87%)
EPI310343 A/duck/Zambia/04/2008 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1222/1392 (87%)
EPI268303 A/duck/Hunan/3748/2004 (A/H6N8) segment 6 (NA) 1616.9 0.000000e+00 1221/1391 (87%)
EPI268302 A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 6 (NA) 1613.2 0.000000e+00 1220/1390 (87%)
EPI268301 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 6 (NA) 1613.2 0.000000e+00 1220/1390 (87%)
EPI439277 A/common teal/Georgia/1/2011 (A/H3N8) segment 6 (NA) 1611.4 0.000000e+00 1206/1369 (88%)
EPI397605 A/duck/Germany-NW/R2185/2006 (A/H6N8) segment 6 (NA) 1611.4 0.000000e+00 1224/1395 (87%)
EPI235185 A/Mallard/65112/03 (A/H3N8) segment 6 (NA) 1611.4 0.000000e+00 1221/1392 (87%)
EPI182115 A/mallard/Netherlands/33/2006 (A/H7N8) segment 6 (NA) 1611.4 0.000000e+00 1222/1393 (87%)
EPI182051 A/turnstone/Netherlands/1/2007 (A/H3N8) segment 6 (NA) 1611.4 0.000000e+00 1222/1393 (87%)
EPI296538 A/mallard/Netherlands/20/2005 (A/H12N8) segment 6 (NA) 1605.9 0.000000e+00 1220/1392 (87%)
EPI296491 A/common eider/Netherlands2/2006 (A/H4N8) segment 6 (NA) 1605.9 0.000000e+00 1220/1392 (87%)
EPI182083 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 6 (NA) 1605.9 0.000000e+00 1220/1392 (87%)
EPI182075 A/common teal/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1605.9 0.000000e+00 1220/1392 (87%)
EPI398924 A/common gull/Norway/10_1602/2009 (A/H6N8) segment 6 (NA) 1600.3 0.000000e+00 1219/1392 (87%)
EPI339172 A/mallard/Germany-BE/R663/08 (A/H3N8) segment 6 (NA) 1600.3 0.000000e+00 1219/1392 (87%)
EPI169324 A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 6 (NA) 1600.3 0.000000e+00 1219/1392 (87%)
EPI14499 A/duck/Spain/543/2006 (A/H6N8) segment 6 (NA) 1600.3 0.000000e+00 1219/1392 (87%)
EPI408014 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1594.8 0.000000e+00 1218/1392 (87%)
EPI345774 A/duck/Eastern China/50/2002 (A/H6N8) segment 6 (NA) 1594.8 0.000000e+00 1218/1392 (87%)
EPI222081 A/gadwall/Altai/1328/2007 (A/H3N8) segment 6 (NA) 1594.8 0.000000e+00 1217/1391 (87%)
EPI222073 A/gadwall/Altai/1326/2007 (A/H3N8) segment 6 (NA) 1594.8 0.000000e+00 1217/1391 (87%)
EPI222065 A/gadwall/Altai/1325/2007 (A/H3N8) segment 6 (NA) 1594.8 0.000000e+00 1217/1391 (87%)
EPI221959 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1594.8 0.000000e+00 1219/1393 (87%)
EPI42316 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1594.8 0.000000e+00 1218/1392 (87%)
EPI13715 A/duck/Norway/1/03 (A/H3N8) segment 6 (NA) 1592.9 0.000000e+00 1216/1391 (87%)
EPI367575 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 6 (NA) 1589.2 0.000000e+00 1218/1393 (87%)
EPI356301 A/Greater white-fronted goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1589.2 0.000000e+00 1217/1392 (87%)
EPI302179 A/Greater White-Fronted Goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1589.2 0.000000e+00 1217/1392 (87%)
EPI251795 A/mallard/Sweden/7/2003 (A/H10N8) segment 6 (NA) 1589.2 0.000000e+00 1147/1289 (88%)
EPI234646 A/duck/Beijing/40/04 (A/H3N8) segment 6 (NA) 1589.2 0.000000e+00 1218/1393 (87%)
EPI222057 A/gadwall/Altai/1324/2007 (A/H3N8) segment 6 (NA) 1589.2 0.000000e+00 1217/1392 (87%)
EPI184026 A/mallard/Hungary/19616/2007 (A/H3N8) segment 6 (NA) 1589.2 0.000000e+00 1218/1393 (87%)
EPI251736 A/mallard/Sweden/50/2002 (A/H3N8) segment 6 (NA) 1583.7 0.000000e+00 1194/1359 (87%)
EPI221967 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1583.7 0.000000e+00 1217/1393 (87%)
EPI221951 A/water/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1583.7 0.000000e+00 1217/1393 (87%)
EPI190374 A/mallard/Netherlands/17/2007 (A/H11N8) segment 6 (NA) 1583.7 0.000000e+00 1216/1392 (87%)
EPI181955 A/mallard/Netherlands/3/2005 (A/H3N8) segment 6 (NA) 1583.7 0.000000e+00 1215/1391 (87%)
EPI174847 A/duck/Denmark/75-65472-P34/2003 (A/H3N8) segment 6 (NA) 1583.7 0.000000e+00 1216/1392 (87%)
EPI132438 A/duck/Eastern China/163/2002 (A/H6N8) segment 6 (NA) 1583.7 0.000000e+00 1216/1392 (87%)
EPI105959 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1583.7 0.000000e+00 1217/1393 (87%)
EPI14495 A/duck/Spain/539/2006 (A/H6N8) segment 6 (NA) 1583.7 0.000000e+00 1216/1392 (87%)
EPI2277 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1583.7 0.000000e+00 1217/1393 (87%)
EPI232400 A/duck/Beijing/61/05 (A/H3N8) segment 6 (NA) 1578.2 0.000000e+00 1216/1393 (87%)
EPI128908 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1578.2 0.000000e+00 1217/1394 (87%)
EPI2443 A/duck/Hokkaido/10/1985 (A/H3N8) segment 6 (NA) 1578.2 0.000000e+00 1216/1393 (87%)
EPI272796 A/mallard/PT/29497-11/2006 (A/H3N8) segment 6 (NA) 1572.6 0.000000e+00 1214/1392 (87%)
EPI221975 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1572.6 0.000000e+00 1215/1393 (87%)
EPI190185 A/mallard/Switzerland/WV4060057/2006 (A/H2N8) segment 6 (NA) 1572.6 0.000000e+00 1214/1392 (87%)
EPI128906 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1572.6 0.000000e+00 1214/1392 (87%)

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PostPosted: Thu Dec 04, 2014 7:41 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Isolate name:
A/eurasian wigeon/Netherlands/emc-1/2014
Isolate ID:
EPI_ISL_168746
Passage details/history:
original material
Type:
A / H5N8
Lineage:

Sample information
Collection date:
2014-11-24
Host
Anas penelope
Additional host information:

Domestic status:
Wild
Is vaccinated:
N
Location:
Netherlands / Provincie Utrecht / Gemeente Woerden
Additional location information:
Between Kamerik and Kockengen
Health status:
Healthy
Specimen source:
Feces
Strain or commercial product name used for vaccination:

Institute information
Originating lab:
Erasmus Medical Center

Sample ID given by the sample provider:
C285-18
Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

Submitting lab:
Erasmus Medical Center

Sample ID given by the submitting laboratory:
C285-18
Authors:
Fouchier, Ron A.M.;
Verhagen, Josanne H.;
Vuong, Oanh;
Bestebroer, Theo;
Van Vliet, Stefan;
Van der Jeugd, Henk

Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

Publication
Publication
In vivo antiviral resistance
Phenotype
Genotype
Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:
Unknown
Oseltamivir:
Unknown
Zanamivir:
Unknown
Peramivir:
Unknown
Other:
Unknown










Additional information
Antigenic characterization:

Note:

Sequence
segment identifier length accession # INSDC Sequence

HA
A/eurasian wigeon/Netherlands/emc-1/2014
1611
EPI551143


NA
A/eurasian wigeon/Netherlands/emc-1/2014
1377
EPI551144

Submitter information
Submitter:
Verhagen, Josanne
Submission Date:
2014-12-04
Last modifier:
Verhagen, Josanne
Last modified:
2014-12-04
Address:
Erasmus Medical Center
Department of Virology
Dr. Molewaterplein 50
3015GE Rotterdam
Netherlands

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PostPosted: Thu Dec 04, 2014 7:46 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 2976.1 0.000000e+00 1611/1611 (100%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1609/1611 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1607/1611 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1607/1611 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1607/1611 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1607/1611 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1606/1611 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1597/1603 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1602/1611 (99%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1600/1611 (99%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1598/1611 (99%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1597/1611 (99%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 2821.0 0.000000e+00 1563/1581 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 2804.3 0.000000e+00 1559/1581 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 2798.8 0.000000e+00 1560/1582 (98%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2689.8 0.000000e+00 1560/1611 (96%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1561/1613 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2671.4 0.000000e+00 1558/1613 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2660.3 0.000000e+00 1556/1613 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2649.2 0.000000e+00 1554/1613 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2632.6 0.000000e+00 1551/1613 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1550/1613 (96%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2616.0 0.000000e+00 1549/1614 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2610.4 0.000000e+00 1548/1614 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2599.4 0.000000e+00 1545/1613 (95%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2593.8 0.000000e+00 1544/1613 (95%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2593.8 0.000000e+00 1544/1613 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 2588.3 0.000000e+00 1544/1614 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2582.7 0.000000e+00 1544/1615 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2582.7 0.000000e+00 1544/1615 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 2582.7 0.000000e+00 1544/1615 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 2582.7 0.000000e+00 1544/1615 (95%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2582.7 0.000000e+00 1543/1614 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 2577.2 0.000000e+00 1543/1615 (95%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2571.7 0.000000e+00 1542/1615 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2566.1 0.000000e+00 1527/1595 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2560.6 0.000000e+00 1540/1615 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2521.8 0.000000e+00 1531/1613 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 2499.6 0.000000e+00 1532/1618 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 2494.1 0.000000e+00 1530/1617 (94%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 2494.1 0.000000e+00 1527/1614 (94%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 2490.4 0.000000e+00 1529/1617 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 2488.6 0.000000e+00 1526/1614 (94%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 2479.3 0.000000e+00 1527/1617 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 2438.7 0.000000e+00 1517/1614 (93%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 2423.9 0.000000e+00 1505/1599 (94%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107959 A/common magpie/Hong Kong/645/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107911 A/goose/Yunnan/1143/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107829 A/goose/Guiyang/1304/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107821 A/chicken/Guiyang/1018/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 2377.8 0.000000e+00 1506/1614 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 2372.2 0.000000e+00 1506/1615 (93%)
EPI107803 A/duck/Guiyang/3996/2005 (A/H5N1) segment 4 (HA) 2372.2 0.000000e+00 1506/1615 (93%)
EPI107771 A/chicken/Guangxi/463/2006 (A/H5N1) segment 4 (HA) 2372.2 0.000000e+00 1505/1614 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI108331 A/goose/Guangxi/1633/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI108329 A/goose/Guangxi/1898/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI107865 A/duck/Hunan/856/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1504/1614 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1505/1615 (93%)
EPI107805 A/chicken/Guiyang/4059/2005 (A/H5N1) segment 4 (HA) 2366.7 0.000000e+00 1505/1615 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 2364.8 0.000000e+00 1503/1613 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI399886 A/duck/HuBei/03/2010 (A/H5N5) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI280104 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI275774 A/chicken/Hunan/21/2005 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI275386 A/Anhui/2/2005 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI181301 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI174656 A/duck/Hunan/3340/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI108327 A/duck/Guangxi/1830/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI107831 A/duck/Guiyang/1418/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI107799 A/chicken/Guiyang/3721/2005 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI106243 A/duck/Laos/3295/2006 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1504/1615 (93%)
EPI97209 A/Duck/Fujian/1734/05 (A/H5N1) segment 4 (HA) 2361.1 0.000000e+00 1503/1614 (93%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1503/1615 (93%)
EPI337107 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI280112 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI275958 A/duck/Anhui/1/06 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1505/1617 (93%)
EPI275870 A/chicken/Sichuan/81/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI227309 A/Mallard/Huadong/lk/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI170615 A/chicken/Vietnam/216/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI170607 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI170599 A/duck/Vietnam/218/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI170591 A/duck/Vietnam/219/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI164216 A/Anhui/1/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1503/1615 (93%)
EPI108341 A/duck/Guangxi/1258/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1503/1615 (93%)
EPI108337 A/duck/Guangxi/1436/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI108333 A/chicken/Guangxi/1951/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1503/1615 (93%)
EPI107767 A/goose/Guangxi/224/2006 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)
EPI107755 A/duck/Guangxi/5270/2005 (A/H5N1) segment 4 (HA) 2355.6 0.000000e+00 1502/1614 (93%)

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PostPosted: Thu Dec 04, 2014 7:48 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI551144 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1377/1377 (100%)
EPI551150 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1375/1377 (99%)
EPI547683 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1375/1377 (99%)
EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1375/1377 (99%)
EPI548626 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1374/1377 (99%)
EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI547675 A/duck/England/36254/14 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1372/1377 (99%)
EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1372/1377 (99%)
EPI542632 A/mallard/Korea/W452/2014 (A/H5N8) segment 6 (NA) 2505.2 0.000000e+00 1370/1377 (99%)
EPI543012 A/duck/Beijing/CT01/2014 (A/H5N8) segment 6 (NA) 2499.6 0.000000e+00 1369/1377 (99%)
EPI517163 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 6 (NA) 2499.6 0.000000e+00 1369/1377 (99%)
EPI543004 A/duck/Beijing/FS01/2014 (A/H5N8) segment 6 (NA) 2494.1 0.000000e+00 1368/1377 (99%)
EPI542627 A/duck/Beijing/FS01/2013 (A/H5N8) segment 6 (NA) 2446.1 0.000000e+00 1352/1368 (98%)
EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2394.4 0.000000e+00 1350/1377 (98%)
EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2377.8 0.000000e+00 1347/1377 (97%)
EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2372.2 0.000000e+00 1346/1377 (97%)
EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2366.7 0.000000e+00 1345/1377 (97%)
EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2366.7 0.000000e+00 1345/1377 (97%)
EPI485330 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 6 (NA) 2111.8 0.000000e+00 1301/1379 (94%)
EPI132266 A/duck/Eastern China/90/2004 (A/H3N8) segment 6 (NA) 2100.8 0.000000e+00 1299/1379 (94%)
EPI132262 A/duck/Eastern China/19/2004 (A/H3N8) segment 6 (NA) 2089.7 0.000000e+00 1297/1379 (94%)
EPI326921 A/environment/Korea/SH12-6/2008 (A/H3N8) segment 6 (NA) 2078.6 0.000000e+00 1294/1378 (93%)
EPI416940 A/duck/Vietnam/OIE-2577/2011 (A/H3N8) segment 6 (NA) 2050.9 0.000000e+00 1290/1379 (93%)
EPI387415 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 6 (NA) 2050.9 0.000000e+00 1268/1346 (94%)
EPI326920 A/environment/Korea/SH12-8/2008 (A/H3N8) segment 6 (NA) 2045.4 0.000000e+00 1276/1360 (93%)
EPI438257 A/duck/Vietnam/G18-1/2011 (A/H3N8) segment 6 (NA) 2034.3 0.000000e+00 1287/1379 (93%)
EPI387510 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 6 (NA) 2028.7 0.000000e+00 1264/1346 (93%)
EPI387494 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 6 (NA) 2023.2 0.000000e+00 1263/1346 (93%)
EPI363489 A/duck/Guangxi/2736/2006 (A/H6N8) segment 6 (NA) 1995.5 0.000000e+00 1280/1379 (92%)
EPI485320 A/ruddy shelduck/Mongolia/1787/2011 (A/H3N8) segment 6 (NA) 1938.3 0.000000e+00 1260/1362 (92%)
EPI485328 A/common shelduck/Mongolia/2076/2011 (A/H3N8) segment 6 (NA) 1807.1 0.000000e+00 1228/1350 (90%)
EPI128912 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1701.9 0.000000e+00 1233/1385 (89%)
EPI407886 A/duck/Ukraine/1963 (A/H3N8) segment 6 (NA) 1696.3 0.000000e+00 1233/1386 (88%)
EPI251642 A/mallard/Netherlands/10/1999 (A/H1N8) segment 6 (NA) 1696.3 0.000000e+00 1199/1337 (89%)
EPI42182 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1696.3 0.000000e+00 1233/1386 (88%)
EPI3107 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1690.8 0.000000e+00 1232/1386 (88%)
EPI132460 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1685.3 0.000000e+00 1231/1386 (88%)
EPI128904 A/duck/Burjatia/652/1988 (A/H3N8) segment 6 (NA) 1618.8 0.000000e+00 1221/1388 (87%)
EPI2999 A/duck/Hong Kong/438/1977 (A/H4N8) segment 6 (NA) 1618.8 0.000000e+00 1219/1386 (87%)
EPI182043 A/common eider/Netherlands/1/2006 (A/H3N8) segment 6 (NA) 1613.2 0.000000e+00 1217/1385 (87%)
EPI397605 A/duck/Germany-NW/R2185/2006 (A/H6N8) segment 6 (NA) 1607.7 0.000000e+00 1217/1386 (87%)
EPI339175 A/mallard/Germany-BY/R1353/2010 (A/H6N8) segment 6 (NA) 1607.7 0.000000e+00 1213/1382 (87%)
EPI336006 A/teal/Chany/444/2009 (A/H8N8) segment 6 (NA) 1607.7 0.000000e+00 1217/1386 (87%)
EPI316502 A/duck/Hubei/126/1985 (A/H7N8) segment 6 (NA) 1607.7 0.000000e+00 1219/1388 (87%)
EPI251715 A/mallard/Sweden/45/2002 (A/H11N8) segment 6 (NA) 1607.7 0.000000e+00 1215/1384 (87%)
EPI398948 A/mallard/Norway/10_779/2009 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1215/1385 (87%)
EPI372503 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1213/1383 (87%)
EPI339174 A/goose/Germany/R1767/2007 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1213/1383 (87%)
EPI316762 A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1212/1382 (87%)
EPI314410 A/mallard/Czech Republic/14516/2007 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1212/1382 (87%)
EPI310343 A/duck/Zambia/04/2008 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1214/1384 (87%)
EPI268303 A/duck/Hunan/3748/2004 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1213/1383 (87%)
EPI268302 A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1214/1384 (87%)
EPI268301 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1214/1384 (87%)
EPI439277 A/common teal/Georgia/1/2011 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1198/1361 (88%)
EPI235185 A/Mallard/65112/03 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1213/1384 (87%)
EPI182115 A/mallard/Netherlands/33/2006 (A/H7N8) segment 6 (NA) 1596.6 0.000000e+00 1214/1385 (87%)
EPI182051 A/turnstone/Netherlands/1/2007 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1214/1385 (87%)
EPI296538 A/mallard/Netherlands/20/2005 (A/H12N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI296491 A/common eider/Netherlands2/2006 (A/H4N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI182083 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI182075 A/common teal/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI398924 A/common gull/Norway/10_1602/2009 (A/H6N8) segment 6 (NA) 1585.5 0.000000e+00 1211/1384 (87%)
EPI339172 A/mallard/Germany-BE/R663/08 (A/H3N8) segment 6 (NA) 1585.5 0.000000e+00 1211/1384 (87%)
EPI169324 A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 6 (NA) 1585.5 0.000000e+00 1211/1384 (87%)
EPI14499 A/duck/Spain/543/2006 (A/H6N8) segment 6 (NA) 1585.5 0.000000e+00 1211/1384 (87%)
EPI408014 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI345774 A/duck/Eastern China/50/2002 (A/H6N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI222081 A/gadwall/Altai/1328/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1209/1383 (87%)
EPI222073 A/gadwall/Altai/1326/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1209/1383 (87%)
EPI222065 A/gadwall/Altai/1325/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1209/1383 (87%)
EPI221959 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI42316 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI367575 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI356301 A/Greater white-fronted goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1209/1384 (87%)
EPI302179 A/Greater White-Fronted Goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1209/1384 (87%)
EPI251795 A/mallard/Sweden/7/2003 (A/H10N8) segment 6 (NA) 1574.5 0.000000e+00 1139/1281 (88%)
EPI234646 A/duck/Beijing/40/04 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI222057 A/gadwall/Altai/1324/2007 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1209/1384 (87%)
EPI184026 A/mallard/Hungary/19616/2007 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI251736 A/mallard/Sweden/50/2002 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1186/1351 (87%)
EPI221967 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI221951 A/water/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI190374 A/mallard/Netherlands/17/2007 (A/H11N8) segment 6 (NA) 1568.9 0.000000e+00 1208/1384 (87%)
EPI181955 A/mallard/Netherlands/3/2005 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1207/1383 (87%)
EPI132438 A/duck/Eastern China/163/2002 (A/H6N8) segment 6 (NA) 1568.9 0.000000e+00 1208/1384 (87%)
EPI105959 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI14495 A/duck/Spain/539/2006 (A/H6N8) segment 6 (NA) 1568.9 0.000000e+00 1208/1384 (87%)
EPI2443 A/duck/Hokkaido/10/1985 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI2277 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI232400 A/duck/Beijing/61/05 (A/H3N8) segment 6 (NA) 1563.4 0.000000e+00 1208/1385 (87%)
EPI128908 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1563.4 0.000000e+00 1209/1386 (87%)
EPI272796 A/mallard/PT/29497-11/2006 (A/H3N8) segment 6 (NA) 1557.8 0.000000e+00 1206/1384 (87%)
EPI236671 A/duck/Siberia/100/2001 (A/H3N8) segment 6 (NA) 1557.8 0.000000e+00 1207/1385 (87%)
EPI221975 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1557.8 0.000000e+00 1207/1385 (87%)
EPI190185 A/mallard/Switzerland/WV4060057/2006 (A/H2N8) segment 6 (NA) 1557.8 0.000000e+00 1206/1384 (87%)
EPI128906 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1557.8 0.000000e+00 1206/1384 (87%)
EPI106660 A/wild bird feces/Korea/ES1-9/03 (A/H10N8) segment 6 (NA) 1557.8 0.000000e+00 1198/1371 (87%)

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PostPosted: Thu Dec 04, 2014 1:40 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/12041 ... geons.html

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