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PostPosted: Thu Nov 15, 2012 9:29 am 
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CDC has released full H5N1 sequences from many of the 2010 and 2011 cases in Egypt (at GISAID).

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PostPosted: Thu Nov 15, 2012 9:29 am 
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A/Egypt/17692/2010 EPI_ISL_120315 H5N1 Original --- --- --- 1740 --- --- --- --- --- --- 2010
A/Egypt/N09407/2010 EPI_ISL_120314 H5N1 Original --- --- --- 1737 --- --- --- --- --- --- 2010
A/Egypt/N16789/2010 EPI_ISL_120313 H5N1 Original --- --- --- 1731 --- --- --- --- --- --- 2010
A/Egypt/N08932/2010 EPI_ISL_120312 H5N1 Original --- --- --- 1737 --- --- --- --- --- --- 2010
A/Egypt/N04285/2011 EPI_ISL_120311 H5N1 Original --- --- --- 1749 --- --- --- --- --- --- 2011
A/Egypt/N00002/2011 EPI_ISL_120310 H5N1 Original --- --- --- 1736 --- --- --- --- --- --- 2011
A/Egypt/N05860/2011 EPI_ISL_120309 H5N1 Original --- --- --- 1704 --- --- --- --- --- --- 2011
A/Egypt/N10954/2010 EPI_ISL_120308 H5N1 Original --- --- --- 1737 --- --- --- --- --- --- 2010
A/Egypt/N04284/2011 EPI_ISL_120307 H5N1 Original --- --- --- 1740 --- --- --- --- --- --- 2011
A/Egypt/N04287/2011 EPI_ISL_120306 H5N1 Original --- --- --- 1749 --- --- --- --- --- --- 2011
A/Egypt/N00166/2011 EPI_ISL_120305 H5N1 Original --- --- --- 1740 --- --- --- --- --- --- 2011
A/Egypt/N04286/2011 EPI_ISL_120304 H5N1 Original --- --- --- 1740 --- --- --- --- --- --- 2011
A/Egypt/N04288/2011 EPI_ISL_120303 H5N1 Original --- --- --- 1748 --- --- --- --- --- --- 2011
A/Egypt/N10621/2011 EPI_ISL_120290 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011-10-30
A/Egypt/N14976/2011 EPI_ISL_120289 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011-12-21
A/Egypt/N11470/2011 EPI_ISL_120288 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011-12-15
A/Egypt/N11126/2011 EPI_ISL_120286 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011-12-01
A/Egypt/N09966/2011 EPI_ISL_120285 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011-09-21
A/Egypt/N7724/2011 EPI_ISL_120284 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N7592/2011 EPI_ISL_120283 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N7562/2011 EPI_ISL_120282 H5N1 E3 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N0423/2011 EPI_ISL_120281 H5N1 E3 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N6828/2011 EPI_ISL_120280 H5N1 E3 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N6774/2011 EPI_ISL_120279 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N0677/2011 EPI_ISL_120278 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N6658/2011 EPI_ISL_120277 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N6322/2011 EPI_ISL_120276 H5N1 E2 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011

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PostPosted: Thu Nov 15, 2012 9:34 am 
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A/Egypt/N0544/2011 EPI_ISL_120275 H5N1 E3 2280 2274 2151 1704 1497 1350 982 823 --- --- 2011
A/Egypt/N03072/2010 EPI_ISL_120274 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-03-07
A/Egypt/N03071/2010 EPI_ISL_120273 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-03-03
A/Egypt/N02554/2010 EPI_ISL_120272 H5N1 E1/E2 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-23
A/Egypt/N02127/2010 EPI_ISL_120271 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-13
A/Egypt/N02038/2010 EPI_ISL_120270 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-15
A/Egypt/N01982/2010 EPI_ISL_120269 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-12
A/Egypt/N01644/2010 EPI_ISL_120268 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-07
A/Egypt/N01360/2010 EPI_ISL_120267 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2010-02-02
A/Egypt/N11981/2009 EPI_ISL_120266 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-11-22
A/Egypt/3450-NAMRU3/2009 EPI_ISL_120265 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-04-19
A/Egypt/4394-NAMRU3/2009 EPI_ISL_120264 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-05-11
A/Egypt/4396-NAMRU3/2009 EPI_ISL_120263 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-05-17
A/Egypt/3228-NAMRU3/2009 EPI_ISL_120262 H5N1 E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-03-30
A/Egypt/2563-NAMRU3/2009 EPI_ISL_120261 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-03-14
A/Egypt/2752-NAMRU3/2009 EPI_ISL_120260 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-03-24
A/Egypt/4935-NAMRU3/2009 EPI_ISL_120259 H5N1 E1/E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2009-05-13
A/Egypt/4979-NAMRU3/2009 EPI_ISL_120258 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-05-31
A/Egypt/4822-NAMRU3/2009 EPI_ISL_120257 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-05-25
A/Egypt/9174-NAMRU3/2009 EPI_ISL_120256 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-08-26
A/Egypt/9539-NAMRU3/2009 EPI_ISL_120255 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-09-16
A/Egypt/4526-NAMRU3/2009 EPI_ISL_120254 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009-05-18
A/Egypt/9538-NAMRU3/2009 EPI_ISL_120253 H5N1 E1/E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2009-05-18
A/Egypt/0585-NAMRU3/2009 EPI_ISL_120252 H5N1 C1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009
A/Egypt/0001-NAMRU3/2009 EPI_ISL_120251 H5N1 C1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009
A/Egypt/2039-NAMRU3/2009 EPI_ISL_120250 H5N1 C1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009
A/Egypt/1310-NAMRU3/2009 EPI_ISL_120249 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009

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PostPosted: Thu Nov 15, 2012 9:35 am 
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A/Egypt/0606-NAMRU3/2009 EPI_ISL_120248 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009
A/Egypt/0605-NAMRU3/2009 EPI_ISL_120247 H5N1 C1E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2009
A/Egypt/3401-NAMRU3/2008 EPI_ISL_120246 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2008
A/Egypt/3300-NAMRU3/2008 EPI_ISL_120245 H5N1 C1/C1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2008
A/Egypt/2472-NAMRU3/2008 EPI_ISL_120244 H5N1 C1/E1 2280 2274 2151 1707 1497 1350 982 823 --- --- 2008
A/Egypt/2546-NAMRU3/2008 EPI_ISL_120243 H5N1 C1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2008-03-08
A/Egypt/2289-NAMRU3/2008 EPI_ISL_120242 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2008-03-02
A/Egypt/1980-NAMRU3/2008 EPI_ISL_120241 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2008-02-26
A/Egypt/0217-NAMRU3/2007 EPI_ISL_120240 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-12-29
A/Egypt/0216-NAMRU3/2007 EPI_ISL_120239 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-12-29
A/Egypt/0215-NAMRU3/2007 EPI_ISL_120238 H5N1 E3/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-12-26
A/Egypt/0211-NAMRU3/2007 EPI_ISL_120237 H5N1 E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-12-24
A/Egypt/6251-NAMRU3/2007 EPI_ISL_120236 H5N1 C1/E2 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-07-21
A/Egypt/4082-NAMRU3/2007 EPI_ISL_120235 H5N1 E2/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-06-10
A/Egypt/4226-NAMRU3/2007 EPI_ISL_120234 H5N1 C1E1/E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-06-21
A/Egypt/902-NAMRU3/2007 EPI_ISL_120233 H5N1 E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-02-28
A/Egypt/321-NAMRU3/2007 EPI_ISL_120232 H5N1 E1 2280 2274 2151 1704 1497 1350 982 823 --- --- 2007-03-13
A/Egypt/394-NAMRU3/2007 EPI_ISL_120231 H5N1 E1 2280 2274 2151 --- 1497 --- 982 823 --- --- 2007-02-05
A/Egypt/321/2007 EPI_ISL_28832 H5N1 E1 --- --- --- 1704 --- 1350 --- --- --- --- 2007

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PostPosted: Thu Nov 15, 2012 9:48 am 
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Location: Pittsburgh, PA USA
Isolate name:

A/Egypt/N14976/2011

Isolate ID:

EPI_ISL_120289
Passage details/history:

E2
Type:

A / H5N1
Lineage:



Sample information

Collection date:

2011-12-21
Host

Human
Additional host information:


Zip code:


Patient status:

Deceased
Last vaccinated:


In-vivo pathogenicity test:


Location:

Egypt
Additional location information:


Patient age:

42 Year(s)
Gender:

Male
Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
U.S. Naval Medical Research Unit No.3
Sample ID given by the sample provider:

2011914976/454
Address:
U.S. Naval Medical Research Unit No.3
NAMRU-3 PSC 452, Box 127 FPO, AE 09835

Egypt


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012705832
Authors:
Younan, M.;
Poh, M.K.;
Elassal, E.;
Simpson, N.;
Jones,J.;
ElBadry,M.A.;
Naguib, A.;
Saied, I.;
Kandeel,A.;
Cornelius, C.
Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Phenotype Genotype Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:


Note:


Sequence

segment identifier length accession # INSDC Sequence
PB2 2012705832_209920_v1_1 2280 EPI372952
PB1 2012705832_209920_v1_2 2274 EPI372953
PA 2012705832_209920_v1_3 2151 EPI372951
HA 2012705832_209920_v1_4 1704 EPI372955
NP 2012705832_209920_v1_5 1497 EPI372948
NA 2012705832_209920_v1_6 1350 EPI372954
MP 2012705832_209920_v1_7 982 EPI372950
NS 2012705832_209920_v1_8 823 EPI372949

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PostPosted: Thu Nov 15, 2012 9:49 am 
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Posts: 43940
Location: Pittsburgh, PA USA
EPI372954 A/Egypt/N14976/2011 (A/H5N1) segment 6 (NA) 2494.1 0.000000e+00 1350/1350 (100%)
EPI372946 A/Egypt/N11470/2011 (A/H5N1) segment 6 (NA) 2494.1 0.000000e+00 1350/1350 (100%)
EPI372938 A/Egypt/N11126/2011 (A/H5N1) segment 6 (NA) 2488.6 0.000000e+00 1349/1350 (99%)
EPI372850 A/Egypt/N0544/2011 (A/H5N1) segment 6 (NA) 2433.2 0.000000e+00 1339/1350 (99%)
EPI336859 A/turkey/Jenin/341/2011 (A/H5N1) segment 6 (NA) 2433.2 0.000000e+00 1339/1350 (99%)
EPI387566 A/duck/Egypt/1113SD/2011 (A/H5N1) segment 6 (NA) 2431.3 0.000000e+00 1338/1349 (99%)
EPI372866 A/Egypt/N6658/2011 (A/H5N1) segment 6 (NA) 2422.1 0.000000e+00 1337/1350 (99%)
EPI372890 A/Egypt/N6828/2011 (A/H5N1) segment 6 (NA) 2418.4 0.000000e+00 1336/1350 (98%)
EPI372874 A/Egypt/N0677/2011 (A/H5N1) segment 6 (NA) 2416.5 0.000000e+00 1336/1350 (98%)
EPI255419 A/Egypt/N14604/2009 (A/H5N1) segment 6 (NA) 2416.5 0.000000e+00 1336/1350 (98%)
EPI372882 A/Egypt/N6774/2011 (A/H5N1) segment 6 (NA) 2412.8 0.000000e+00 1335/1350 (98%)
EPI387571 A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 6 (NA) 2409.2 0.000000e+00 1334/1349 (98%)
EPI393787 A/Egypt/N02137/2012 (A/H5N1) segment 6 (NA) 2405.5 0.000000e+00 1334/1350 (98%)
EPI372914 A/Egypt/N7592/2011 (A/H5N1) segment 6 (NA) 2405.5 0.000000e+00 1334/1350 (98%)
EPI372858 A/Egypt/N6322/2011 (A/H5N1) segment 6 (NA) 2405.5 0.000000e+00 1334/1350 (98%)
EPI338186 A/harrier/Israel/531/2011 (A/H5N1) segment 6 (NA) 2405.5 0.000000e+00 1335/1351 (98%)
EPI372922 A/Egypt/N7724/2011 (A/H5N1) segment 6 (NA) 2401.8 0.000000e+00 1333/1350 (98%)
EPI393784 A/Egypt/N00951/2012 (A/H5N1) segment 6 (NA) 2399.9 0.000000e+00 1333/1350 (98%)
EPI372962 A/Egypt/N10621/2011 (A/H5N1) segment 6 (NA) 2399.9 0.000000e+00 1333/1350 (98%)
EPI372906 A/Egypt/N7562/2011 (A/H5N1) segment 6 (NA) 2399.9 0.000000e+00 1333/1350 (98%)
EPI255399 A/Egypt/N09174/2009 (A/H5N1) segment 6 (NA) 2399.9 0.000000e+00 1333/1350 (98%)
EPI255368 A/Egypt/N01982/2010 (A/H5N1) segment 6 (NA) 2399.9 0.000000e+00 1333/1350 (98%)
EPI255372 A/Egypt/N02127/2010 (A/H5N1) segment 6 (NA) 2394.4 0.000000e+00 1332/1350 (98%)
EPI294490 A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 6 (NA) 2392.5 0.000000e+00 1331/1349 (98%)
EPI372930 A/Egypt/N09966/2011 (A/H5N1) segment 6 (NA) 2388.8 0.000000e+00 1331/1350 (98%)
EPI255387 A/Egypt/N05049/2009 (A/H5N1) segment 6 (NA) 2388.8 0.000000e+00 1331/1350 (98%)
EPI294576 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 6 (NA) 2387.0 0.000000e+00 1330/1349 (98%)
EPI372714 A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 6 (NA) 2385.1 0.000000e+00 1330/1350 (98%)
EPI294611 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 6 (NA) 2381.5 0.000000e+00 1329/1349 (98%)
EPI387570 A/duck/Egypt/1148SF/2011 (A/H5N1) segment 6 (NA) 2377.8 0.000000e+00 1311/1323 (99%)
EPI255376 A/Egypt/N02770/2010 (A/H5N1) segment 6 (NA) 2377.8 0.000000e+00 1329/1350 (98%)
EPI387567 A/goose/Egypt/1117SF/2011 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1305/1315 (99%)
EPI255395 A/Egypt/N08835/2009 (A/H5N1) segment 6 (NA) 2372.2 0.000000e+00 1328/1350 (98%)
EPI255393 A/Egypt/N07908/2009 (A/H5N1) segment 6 (NA) 2372.2 0.000000e+00 1328/1350 (98%)
EPI255362 A/Egypt/N00270/2010 (A/H5N1) segment 6 (NA) 2372.2 0.000000e+00 1328/1350 (98%)
EPI306404 A/duck/Egypt/09184SM-NLQP/2009 (A/H5N1) segment 6 (NA) 2370.4 0.000000e+00 1327/1349 (98%)
EPI184805 A/Egypt/N00585/2009 (A/H5N1) segment 6 (NA) 2370.4 0.000000e+00 1327/1349 (98%)
EPI184817 A/Egypt/N02563/2009 (A/H5N1) segment 6 (NA) 2364.8 0.000000e+00 1326/1349 (98%)
EPI184815 A/Egypt/N02407/2009 (A/H5N1) segment 6 (NA) 2364.8 0.000000e+00 1326/1349 (98%)
EPI184803 A/Egypt/N00001/2009 (A/H5N1) segment 6 (NA) 2364.8 0.000000e+00 1326/1349 (98%)
EPI294569 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 6 (NA) 2363.0 0.000000e+00 1321/1342 (98%)
EPI255378 A/Egypt/N03071/2010 (A/H5N1) segment 6 (NA) 2361.1 0.000000e+00 1326/1350 (98%)
EPI255374 A/Egypt/N02554/2010 (A/H5N1) segment 6 (NA) 2361.1 0.000000e+00 1326/1350 (98%)
EPI255370 A/Egypt/N02038/2010 (A/H5N1) segment 6 (NA) 2361.1 0.000000e+00 1326/1350 (98%)
EPI184838 A/Egypt/N04396/2009 (A/H5N1) segment 6 (NA) 2359.3 0.000000e+00 1325/1349 (98%)
EPI184833 A/Egypt/N04316/2009 (A/H5N1) segment 6 (NA) 2359.3 0.000000e+00 1325/1349 (98%)
EPI184829 A/Egypt/N03439/2009 (A/H5N1) segment 6 (NA) 2359.3 0.000000e+00 1325/1349 (98%)
EPI184823 A/Egypt/N03272/2009 (A/H5N1) segment 6 (NA) 2359.3 0.000000e+00 1325/1349 (98%)
EPI184821 A/Egypt/N03228/2009 (A/H5N1) segment 6 (NA) 2359.3 0.000000e+00 1325/1349 (98%)
EPI255421 A/Egypt/N15262/2009 (A/H5N1) segment 6 (NA) 2353.8 0.000000e+00 1324/1349 (98%)
EPI184836 A/Egypt/N04395/2009 (A/H5N1) segment 6 (NA) 2353.8 0.000000e+00 1324/1349 (98%)
EPI184811 A/Egypt/N01310/2009 (A/H5N1) segment 6 (NA) 2353.8 0.000000e+00 1324/1349 (98%)
EPI184807 A/Egypt/N00605/2009 (A/H5N1) segment 6 (NA) 2353.8 0.000000e+00 1324/1349 (98%)
EPI307114 A/chicken/Egypt/10189s/2010 (A/H5N1) segment 6 (NA) 2348.2 0.000000e+00 1311/1331 (98%)
EPI255380 A/Egypt/N03072/2010 (A/H5N1) segment 6 (NA) 2348.2 0.000000e+00 1323/1349 (98%)
EPI184813 A/Egypt/N02039/2009 (A/H5N1) segment 6 (NA) 2348.2 0.000000e+00 1323/1349 (98%)
EPI372752 A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 6 (NA) 2342.7 0.000000e+00 1322/1349 (97%)
EPI294469 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 6 (NA) 2342.7 0.000000e+00 1322/1349 (97%)
EPI266292 A/duck/Egypt/0990SM-NLQP/2009 (A/H5N1) segment 6 (NA) 2340.8 0.000000e+00 1321/1348 (97%)
EPI307130 A/duck/Egypt/1011d/2010 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1305/1325 (98%)
EPI307118 A/chicken/Egypt/1034/2010 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1305/1325 (98%)
EPI294660 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1304/1323 (98%)
EPI255383 A/Egypt/N04434/2010 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1321/1349 (97%)
EPI255366 A/Egypt/N01644/2010 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1321/1349 (97%)
EPI184846 A/Egypt/N04823/2009 (A/H5N1) segment 6 (NA) 2337.1 0.000000e+00 1321/1349 (97%)
EPI387575 A/duck/Egypt/11106SF/2011 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1290/1303 (99%)
EPI294653 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1303/1322 (98%)
EPI266273 A/duck/Egypt/0984smf-NLQP/2009 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1313/1338 (98%)
EPI387576 A/chicken/Egypt/1155/2011 (A/H5N1) segment 6 (NA) 2333.4 0.000000e+00 1287/1299 (99%)
EPI266293 A/goose/Egypt/09324sm-NLQP/2009 (A/H5N1) segment 6 (NA) 2333.4 0.000000e+00 1311/1335 (98%)
EPI255360 A/Egypt/N00269/2010 (A/H5N1) segment 6 (NA) 2333.4 0.000000e+00 1321/1350 (97%)
EPI255385 A/Egypt/N04830/2009 (A/H5N1) segment 6 (NA) 2331.6 0.000000e+00 1321/1350 (97%)
EPI184842 A/Egypt/N04527/2009 (A/H5N1) segment 6 (NA) 2331.6 0.000000e+00 1320/1349 (97%)
EPI184819 A/Egypt/N02752/2009 (A/H5N1) segment 6 (NA) 2331.6 0.000000e+00 1320/1349 (97%)
EPI307133 A/duck/Egypt/0972-NLQP/2009 (A/H5N1) segment 6 (NA) 2327.9 0.000000e+00 1308/1332 (98%)
EPI182319 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 6 (NA) 2327.9 0.000000e+00 1308/1332 (98%)
EPI255412 A/Egypt/N11981/2009 (A/H5N1) segment 6 (NA) 2326.1 0.000000e+00 1319/1349 (97%)
EPI184809 A/Egypt/N00606/2009 (A/H5N1) segment 6 (NA) 2326.1 0.000000e+00 1320/1350 (97%)
EPI307109 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 6 (NA) 2322.4 0.000000e+00 1309/1335 (98%)
EPI372898 A/Egypt/N0423/2011 (A/H5N1) segment 6 (NA) 2320.5 0.000000e+00 1318/1349 (97%)
EPI184831 A/Egypt/N03450/2009 (A/H5N1) segment 6 (NA) 2320.5 0.000000e+00 1318/1349 (97%)
EPI168496 A/Egypt/2629-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2320.5 0.000000e+00 1312/1340 (97%)
EPI168495 A/Egypt/2621-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2320.5 0.000000e+00 1312/1340 (97%)
EPI115009 A/Egypt/0636-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2320.5 0.000000e+00 1318/1349 (97%)
EPI387582 A/chicken/Egypt/1119AF/2011 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1287/1303 (98%)
EPI387569 A/chicken/Egypt/112AF/2011 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1283/1297 (98%)
EPI255364 A/Egypt/N01360/2010 (A/H5N1) segment 6 (NA) 2315.0 0.000000e+00 1318/1350 (97%)
EPI397643 A/Egypt/321-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1316/1349 (97%)
EPI174806 A/Egypt/321/2007(H5N1)-PR8-IDCDC-RG11 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1316/1349 (97%)
EPI173708 A/Egypt/321/2007 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1316/1349 (97%)
EPI168498 A/Egypt/2631-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1310/1340 (97%)
EPI168492 A/Egypt/2331-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1316/1349 (97%)
EPI168491 A/Egypt/2321-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2309.4 0.000000e+00 1316/1349 (97%)
EPI168486 A/Egypt/1394-NAMRU3/2007 (A/H5N1) segment 6 (NA) 2305.7 0.000000e+00 1314/1347 (97%)
EPI387581 A/quail/Egypt/1171SG/2011 (A/H5N1) segment 6 (NA) 2303.9 0.000000e+00 1273/1286 (98%)
EPI184850 A/Egypt/N05056/2009 (A/H5N1) segment 6 (NA) 2303.9 0.000000e+00 1315/1349 (97%)
EPI184827 A/Egypt/N03438/2009 (A/H5N1) segment 6 (NA) 2303.9 0.000000e+00 1315/1349 (97%)
EPI168512 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 6 (NA) 2303.9 0.000000e+00 1309/1340 (97%)
EPI156773 A/chicken/Egypt/5169-3/2007 (A/H5N1) segment 6 (NA) 2303.9 0.000000e+00 1315/1349 (97%)
EPI387578 A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1268/1279 (99%)

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PostPosted: Thu Nov 15, 2012 9:51 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 43940
Location: Pittsburgh, PA USA
EPI372955 A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%)
EPI372947 A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%)
EPI372939 A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%)
EPI338733 A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%)
EPI338732 A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%)
EPI338616 A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%)
EPI348153 A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA) 3077.6 0.000000e+00 1691/1704 (99%)
EPI372907 A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI348152 A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI340138 A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI340103 A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI340087 A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI340085 A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI373013 A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
EPI373012 A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
EPI373011 A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
EPI340151 A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
EPI340135 A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
EPI373020 A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%)
EPI348160 A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA) 3066.6 0.000000e+00 1688/1702 (99%)
EPI348156 A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA) 3066.6 0.000000e+00 1688/1703 (99%)
EPI373016 A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI340133 A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI340101 A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI340094 A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI338615 A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI338614 A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI338610 A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
EPI369180 A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340165 A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340154 A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340141 A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340131 A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340122 A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340107 A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%)
EPI340104 A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340092 A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI340091 A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%)
EPI348157 A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA) 3055.5 0.000000e+00 1686/1702 (99%)
EPI348151 A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA) 3055.5 0.000000e+00 1683/1698 (99%)
EPI340118 A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA) 3055.5 0.000000e+00 1690/1707 (99%)
EPI373015 A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)
EPI372851 A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)
EPI340123 A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)
EPI336862 A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)
EPI373017 A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%)
EPI372923 A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%)
EPI369189 A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%)
EPI373019 A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI373018 A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI372963 A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI372875 A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI372859 A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340173 A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1687/1705 (98%)
EPI340160 A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340136 A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340126 A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340124 A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340121 A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340119 A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340109 A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340102 A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI340082 A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI338731 A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI338613 A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI338612 A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI338611 A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%)
EPI348158 A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA) 3046.2 0.000000e+00 1685/1703 (98%)
EPI397334 A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI393783 A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI372867 A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340152 A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340149 A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340147 A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1686/1705 (98%)
EPI340129 A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340127 A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340116 A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340106 A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340100 A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI340099 A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI338730 A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1686/1705 (98%)
EPI338609 A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%)
EPI348154 A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA) 3040.7 0.000000e+00 1684/1704 (98%)
EPI372915 A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA) 3038.9 0.000000e+00 1684/1704 (98%)
EPI373014 A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI372883 A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI372715 A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI369181 A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI340096 A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI255398 A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
EPI348155 A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA) 3035.2 0.000000e+00 1675/1691 (99%)
EPI369179 A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%)
EPI373022 A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI372891 A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI340134 A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI340115 A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI340110 A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI340097 A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI338729 A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
EPI338608 A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)

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PostPosted: Thu Nov 15, 2012 9:55 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 43940
Location: Pittsburgh, PA USA
EPI372950 A/Egypt/N14976/2011 (A/H5N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI372942 A/Egypt/N11470/2011 (A/H5N1) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI372934 A/Egypt/N11126/2011 (A/H5N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI374700 A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%)
EPI393788 A/Egypt/N02137/2012 (A/H5N1) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI372870 A/Egypt/N0677/2011 (A/H5N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI372846 A/Egypt/N0544/2011 (A/H5N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI393785 A/Egypt/N00951/2012 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372886 A/Egypt/N6828/2011 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372878 A/Egypt/N6774/2011 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372862 A/Egypt/N6658/2011 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372854 A/Egypt/N6322/2011 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372730 A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI372710 A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%)
EPI294649 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 7 (MP) 1768.4 0.000000e+00 973/981 (99%)
EPI294607 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 7 (MP) 1768.4 0.000000e+00 973/981 (99%)
EPI393224 A/chicken/Egypt/1034/2010 (A/H5N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%)
EPI372926 A/Egypt/N09966/2011 (A/H5N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%)
EPI372902 A/Egypt/N7562/2011 (A/H5N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%)
EPI372816 A/Egypt/N02038/2010 (A/H5N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%)
EPI393174 A/chicken/Egypt/11669S/2011 (A/H5N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%)
EPI372918 A/Egypt/N7724/2011 (A/H5N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%)
EPI372910 A/Egypt/N7592/2011 (A/H5N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%)
EPI372828 A/Egypt/N02554/2010 (A/H5N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%)
EPI372822 A/Egypt/N02127/2010 (A/H5N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%)
EPI294465 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI372958 A/Egypt/N10621/2011 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
EPI372834 A/Egypt/N03071/2010 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
EPI372704 A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
EPI372698 A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
EPI372674 A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
EPI294628 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI393216 A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI372774 A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI372768 A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI372724 A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI372692 A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI372686 A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%)
EPI393225 A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%)
EPI372810 A/Egypt/N01982/2010 (A/H5N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%)
EPI372786 A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%)
EPI372762 A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%)
EPI372748 A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%)
EPI294656 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 7 (MP) 1738.8 0.000000e+00 957/965 (99%)
EPI294572 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 7 (MP) 1738.8 0.000000e+00 959/968 (99%)
EPI372680 A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%)
EPI294544 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 7 (MP) 1735.1 0.000000e+00 963/975 (98%)
EPI393175 A/chicken/Egypt/11316SS/2011 (A/H5N1) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%)
EPI372804 A/Egypt/N01644/2010 (A/H5N1) segment 7 (MP) 1731.4 0.000000e+00 969/984 (98%)
EPI372792 A/Egypt/N11981/2009 (A/H5N1) segment 7 (MP) 1731.4 0.000000e+00 969/984 (98%)
EPI372780 A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%)
EPI372798 A/Egypt/N01360/2010 (A/H5N1) segment 7 (MP) 1727.7 0.000000e+00 967/983 (98%)
EPI372756 A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%)
EPI372840 A/Egypt/N03072/2010 (A/H5N1) segment 7 (MP) 1720.4 0.000000e+00 968/985 (98%)
EPI372576 A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%)
EPI294565 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 7 (MP) 1720.4 0.000000e+00 953/964 (98%)
EPI294479 A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 7 (MP) 1720.4 0.000000e+00 949/958 (99%)
EPI294579 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 7 (MP) 1716.7 0.000000e+00 955/968 (98%)
EPI393222 A/chicken/Egypt/119S/2011 (A/H5N1) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%)
EPI372582 A/Egypt/321-NAMRU3/2007 (A/H5N1) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%)
EPI393223 A/chicken/Egypt/101604v/2010 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI372642 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI372588 A/Egypt/902-NAMRU3/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI314345 A/duck/Egypt/D2br10/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI259597 A/duck/Egypt/D2Br3/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI259595 A/duck/Egypt/D1Br3/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI259594 A/duck/Egypt/D1Tr214/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI225829 A/chicken/Gaza/714/2006 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI225823 A/chicken/Gaza/450/2006 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI156780 A/duck/Egypt/5169-4/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI152048 A/chicken/Egypt/5169-2/2007 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI132177 A/turkey/Israel/364/2006 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI132174 A/turkey/Israel/345/2006 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI58621 A/chicken/Egypt/2253-1/2006 (A/H5N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%)
EPI244427 A/turkey/Egypt/7/2007 (A/H5N1) segment 7 (MP) 1707.4 0.000000e+00 962/981 (98%)
EPI393214 A/chicken/Egypt/07175-NLQP/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI372736 A/Egypt/4822-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI372612 A/Egypt/0211-NAMRU3/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI276255 A/chicken/Egypt/08124S-NLQP/2008 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI259600 A/duck/Egypt/D3Li4/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI225069 A/duck/Egypt/2253-3/2006 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI156772 A/chicken/Egypt/5169-3/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI154922 A/duck/Egypt/1709-3VIR08/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI152040 A/duck/Egypt/5169-1/2007 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI132186 A/chicken/Israel/625/2006 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI132180 A/turkey/Israel/446/2006 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI58640 A/turkey/Egypt/2253-2/2006 (A/H5N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)
EPI352592 A/chicken/Qalubia/1/2006 (A/H5N1) segment 7 (MP) 1701.9 0.000000e+00 961/981 (97%)
EPI393212 A/chicken/Egypt/06207-NLQP/2006 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI372894 A/Egypt/N0423/2011 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 964/985 (97%)
EPI372654 A/Egypt/2472-NAMRU3/2008 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI372648 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI259599 A/duck/Egypt/D3Lu13/2007 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI232421 A/whooper swan/Mongolia/244/2005 (A/H5) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI190437 A/duck/Egypt/0871/2008 (A/H5N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%)
EPI372742 A/Egypt/4979-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%)
EPI372718 A/Egypt/4526-NAMRU3/2009 (A/H5N1) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%)
EPI233751 A/goose/Nigeria/08RS848-56/2007 (A/H5N1) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%)
EPI223063 A/duck/Hungary/11804/2006 (A/H5N1) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%)
EPI184080 A/goose/Hungary/14756/2006 (A/H5N1) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%)

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PostPosted: Thu Nov 15, 2012 9:57 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 43940
Location: Pittsburgh, PA USA
EPI372952 A/Egypt/N14976/2011 (A/H5N1) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI372944 A/Egypt/N11470/2011 (A/H5N1) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI372936 A/Egypt/N11126/2011 (A/H5N1) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%)
EPI372848 A/Egypt/N0544/2011 (A/H5N1) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%)
EPI372864 A/Egypt/N6658/2011 (A/H5N1) segment 1 (PB2) 4135.8 0.000000e+00 2266/2280 (99%)
EPI372880 A/Egypt/N6774/2011 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI372812 A/Egypt/N01982/2010 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI372912 A/Egypt/N7592/2011 (A/H5N1) segment 1 (PB2) 4132.1 0.000000e+00 2265/2280 (99%)
EPI372928 A/Egypt/N09966/2011 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI372904 A/Egypt/N7562/2011 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI372888 A/Egypt/N6828/2011 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI372872 A/Egypt/N0677/2011 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI372920 A/Egypt/N7724/2011 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI372856 A/Egypt/N6322/2011 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI372732 A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI372824 A/Egypt/N02127/2010 (A/H5N1) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI372712 A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4109.9 0.000000e+00 2261/2280 (99%)
EPI372960 A/Egypt/N10621/2011 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI372726 A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI372706 A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4067.4 0.000000e+00 2254/2280 (98%)
EPI372830 A/Egypt/N02554/2010 (A/H5N1) segment 1 (PB2) 4063.7 0.000000e+00 2253/2280 (98%)
EPI372836 A/Egypt/N03071/2010 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2253/2280 (98%)
EPI372818 A/Egypt/N02038/2010 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2253/2280 (98%)
EPI294609 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 1 (PB2) 4060.1 0.000000e+00 2238/2258 (99%)
EPI294481 A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 1 (PB2) 4060.1 0.000000e+00 2232/2249 (99%)
EPI372700 A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI372694 A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%)
EPI294658 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 1 (PB2) 4036.0 0.000000e+00 2223/2242 (99%)
EPI372676 A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%)
EPI294651 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 1 (PB2) 4030.5 0.000000e+00 2222/2242 (99%)
EPI372688 A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4028.7 0.000000e+00 2247/2280 (98%)
EPI372764 A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4026.8 0.000000e+00 2246/2280 (98%)
EPI372770 A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4025.0 0.000000e+00 2246/2280 (98%)
EPI372750 A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4023.1 0.000000e+00 2246/2280 (98%)
EPI372782 A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 4021.3 0.000000e+00 2245/2280 (98%)
EPI294467 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 1 (PB2) 4015.7 0.000000e+00 2228/2255 (98%)
EPI372806 A/Egypt/N01644/2010 (A/H5N1) segment 1 (PB2) 4012.0 0.000000e+00 2244/2280 (98%)
EPI372794 A/Egypt/N11981/2009 (A/H5N1) segment 1 (PB2) 4012.0 0.000000e+00 2244/2280 (98%)
EPI372842 A/Egypt/N03072/2010 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2242/2280 (98%)
EPI372682 A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 3995.4 0.000000e+00 2241/2280 (98%)
EPI372788 A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI372896 A/Egypt/N0423/2011 (A/H5N1) segment 1 (PB2) 3978.8 0.000000e+00 2238/2280 (98%)
EPI372800 A/Egypt/N01360/2010 (A/H5N1) segment 1 (PB2) 3978.8 0.000000e+00 2238/2280 (98%)
EPI294574 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 1 (PB2) 3975.1 0.000000e+00 2190/2209 (99%)
EPI372776 A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 3967.7 0.000000e+00 2235/2280 (98%)
EPI294546 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 1 (PB2) 3962.2 0.000000e+00 2187/2208 (99%)
EPI372758 A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 1 (PB2) 3951.1 0.000000e+00 2235/2282 (97%)
EPI372578 A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3945.6 0.000000e+00 2233/2281 (97%)
EPI294581 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 1 (PB2) 3941.9 0.000000e+00 2185/2211 (98%)
EPI294567 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 1 (PB2) 3923.4 0.000000e+00 2168/2190 (98%)
EPI259615 A/duck/Egypt/D1Br22/2007 (A/H5N1) segment 1 (PB2) 3917.9 0.000000e+00 2228/2281 (97%)
EPI372650 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI259616 A/duck/Egypt/D1Li216/2007 (A/H5N1) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI259614 A/duck/Egypt/D1Tr8/2007 (A/H5N1) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI154900 A/chicken/Egypt/452-2/2007 (A/H5N1) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%)
EPI58655 A/turkey/Egypt/2253-2/2006 (A/H5N1) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%)
EPI58636 A/chicken/Egypt/2253-1/2006 (A/H5N1) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%)
EPI352589 A/chicken/Qalubia/1/2006 (A/H5N1) segment 1 (PB2) 3895.7 0.000000e+00 2220/2276 (97%)
EPI225828 A/chicken/Gaza/450/2006 (A/H5N1) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI132252 A/turkey/Israel/345/2006 (A/H5N1) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI372644 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI372590 A/Egypt/902-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI259618 A/duck/Egypt/D2Li218/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI259617 A/duck/Egypt/D2Br212/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI225834 A/chicken/Gaza/714/2006 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI152036 A/duck/Egypt/5169-1/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI141213 A/chicken/Israel/364/2006 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI314346 A/duck/Egypt/D2br10/2007 (A/H5N1) segment 1 (PB2) 3884.6 0.000000e+00 2222/2281 (97%)
EPI294630 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 1 (PB2) 3884.6 0.000000e+00 2177/2214 (98%)
EPI156730 A/duck/Egypt/452-1VIR07/2006 (A/H5N1) segment 1 (PB2) 3884.6 0.000000e+00 2222/2281 (97%)
EPI314367 A/chicken/Egypt/CL6/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI259623 A/chicken/Egypt/C1Li22/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI259622 A/chicken/Egypt/C1Lu10/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI259620 A/duck/Egypt/D3Li212/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI225075 A/duck/Egypt/2253-3/2006 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI169454 A/mute swan/France/06303/2006 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI156775 A/duck/Egypt/5169-4/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI154332 A/falcon/Saudi Arabia/D1795/2005 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI132260 A/chicken/Israel/625/2006 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI132254 A/turkey/Israel/446/2006 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI271857 A/chicken/Egypt/C3Br212/2007 (A/H5N1) segment 1 (PB2) 3873.5 0.000000e+00 2221/2282 (97%)
EPI259621 A/chicken/Egypt/C1Tr4/2007 (A/H5N1) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%)
EPI169432 A/common pochard/France/06167/2006 (A/H5N1) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%)
EPI372638 A/Egypt/1980-NAMRU3/2008 (A/H5N1) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%)
EPI259619 A/duck/Egypt/D3Lu27/2007 (A/H5N1) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%)
EPI124553 A/chicken/Egypt/3/2006 (A/H5N1) segment 1 (PB2) 3868.0 0.000000e+00 2205/2260 (97%)
EPI372614 A/Egypt/0211-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%)
EPI372584 A/Egypt/321-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%)
EPI124557 A/Egypt/902786/2006 (A/H5N1) segment 1 (PB2) 3862.5 0.000000e+00 2200/2254 (97%)
EPI47160 A/mallard/Italy/835/2006 (A/H5N1) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%)
EPI372626 A/Egypt/0216-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2218/2282 (97%)
EPI337132 A/Xinjiang/1/2006 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI280125 A/Xinjiang/1/2006 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI232427 A/whooper swan/Mongolia/244/2005 (A/H5) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI184094 A/mute swan/Hungary/4571/2006 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI186391 A/cygnus olor/Slovenia/156/2006 (A/H5N1) segment 1 (PB2) 3855.1 0.000000e+00 2216/2281 (97%)
EPI152312 A/chicken/Nigeria/228-10/2006 (A/H5N1) segment 1 (PB2) 3853.2 0.000000e+00 2213/2276 (97%)
EPI372670 A/Egypt/3401-NAMRU3/2008 (A/H5N1) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%)
EPI372620 A/Egypt/0215-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%)
EPI372602 A/Egypt/4082-NAMRU3/2007 (A/H5N1) segment 1 (PB2) 3851.4 0.000000e+00 2215/2281 (97%)

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PostPosted: Thu Nov 15, 2012 9:59 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 43940
Location: Pittsburgh, PA USA
EPI372953 A/Egypt/N14976/2011 (A/H5N1) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI372945 A/Egypt/N11470/2011 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI372937 A/Egypt/N11126/2011 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI372849 A/Egypt/N0544/2011 (A/H5N1) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%)
EPI372865 A/Egypt/N6658/2011 (A/H5N1) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI372857 A/Egypt/N6322/2011 (A/H5N1) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI372889 A/Egypt/N6828/2011 (A/H5N1) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%)
EPI372881 A/Egypt/N6774/2011 (A/H5N1) segment 2 (PB1) 4121.0 0.000000e+00 2259/2274 (99%)
EPI372913 A/Egypt/N7592/2011 (A/H5N1) segment 2 (PB1) 4113.6 0.000000e+00 2258/2274 (99%)
EPI372929 A/Egypt/N09966/2011 (A/H5N1) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%)
EPI372921 A/Egypt/N7724/2011 (A/H5N1) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%)
EPI372873 A/Egypt/N0677/2011 (A/H5N1) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%)
EPI372961 A/Egypt/N10621/2011 (A/H5N1) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI372905 A/Egypt/N7562/2011 (A/H5N1) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI372733 A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%)
EPI372813 A/Egypt/N01982/2010 (A/H5N1) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%)
EPI372825 A/Egypt/N02127/2010 (A/H5N1) segment 2 (PB1) 4078.5 0.000000e+00 2252/2274 (99%)
EPI294547 A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 2 (PB1) 4078.5 0.000000e+00 2252/2274 (99%)
EPI372713 A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4071.1 0.000000e+00 2250/2274 (98%)
EPI372831 A/Egypt/N02554/2010 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI294610 A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2245/2268 (98%)
EPI294482 A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2244/2267 (98%)
EPI294575 A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 2 (PB1) 4058.2 0.000000e+00 2248/2274 (98%)
EPI294659 A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 2 (PB1) 4047.1 0.000000e+00 2246/2274 (98%)
EPI372837 A/Egypt/N03071/2010 (A/H5N1) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%)
EPI294652 A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 2 (PB1) 4039.7 0.000000e+00 2241/2268 (98%)
EPI372819 A/Egypt/N02038/2010 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI372707 A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI372727 A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4021.3 0.000000e+00 2241/2274 (98%)
EPI294582 A/duck/Egypt/3982-12/2010 (A/H5N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI390990 A/chicken/Egypt/1029/2010 (A/H5N1) segment 2 (PB1) 4010.2 0.000000e+00 2225/2252 (98%)
EPI372701 A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI372677 A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI294468 A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI372783 A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI372765 A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI294568 A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2225/2257 (98%)
EPI372789 A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3986.2 0.000000e+00 2235/2274 (98%)
EPI372771 A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI372695 A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI372689 A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI372795 A/Egypt/N11981/2009 (A/H5N1) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI372751 A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI372777 A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3958.5 0.000000e+00 2230/2274 (98%)
EPI372807 A/Egypt/N01644/2010 (A/H5N1) segment 2 (PB1) 3956.6 0.000000e+00 2230/2274 (98%)
EPI372759 A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3951.1 0.000000e+00 2228/2274 (97%)
EPI372843 A/Egypt/N03072/2010 (A/H5N1) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI372801 A/Egypt/N01360/2010 (A/H5N1) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI372579 A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI372683 A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI294631 A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 2 (PB1) 3919.7 0.000000e+00 2216/2265 (97%)
EPI390992 A/duck/Egypt/1011d/2010 (A/H5N1) segment 2 (PB1) 3912.3 0.000000e+00 2170/2196 (98%)
EPI372897 A/Egypt/N0423/2011 (A/H5N1) segment 2 (PB1) 3912.3 0.000000e+00 2223/2275 (97%)
EPI132246 A/chicken/Israel/625/2006 (A/H5N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI132240 A/turkey/Israel/446/2006 (A/H5N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI58633 A/chicken/Egypt/2253-1/2006 (A/H5N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI390996 A/chicken/Egypt/1021L/2010 (A/H5N1) segment 2 (PB1) 3910.5 0.000000e+00 2167/2192 (98%)
EPI58652 A/turkey/Egypt/2253-2/2006 (A/H5N1) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%)
EPI372585 A/Egypt/321-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI225827 A/chicken/Gaza/450/2006 (A/H5N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI156770 A/chicken/Egypt/5169-3/2007 (A/H5N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI132234 A/turkey/Israel/345/2006 (A/H5N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI372651 A/Egypt/2546-NAMRU3/2008 (A/H5N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI372645 A/Egypt/2289-NAMRU3/2008 (A/H5N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI259626 A/duck/Egypt/D1Li33/2007 (A/H5N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI259625 A/duck/Egypt/D1Br423/2007 (A/H5N1) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI124570 A/Egypt/902782/2006 (A/H5N1) segment 2 (PB1) 3895.7 0.000000e+00 2211/2262 (97%)
EPI259624 A/duck/Egypt/D1Tr712/2007 (A/H5N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI225074 A/duck/Egypt/2253-3/2006 (A/H5N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI152046 A/chicken/Egypt/5169-2/2007 (A/H5N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI390998 A/chicken/Egypt/1188/2011 (A/H5N1) segment 2 (PB1) 3888.3 0.000000e+00 2153/2177 (98%)
EPI156733 A/duck/Egypt/452-1VIR07/2006 (A/H5N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%)
EPI154953 A/chicken/Egitto/2628-1/2007 (A/H5N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%)
EPI154333 A/falcon/Saudi Arabia/D1795/2005 (A/H5N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%)
EPI132237 A/turkey/Israel/364/2006 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2216/2274 (97%)
EPI373008 A/chicken/Egypt/9403-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI259630 A/duck/Egypt/D3Li748/2007 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI225833 A/chicken/Gaza/714/2006 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI181999 A/chicken/Egypt/0836/2008 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI156778 A/duck/Egypt/5169-4/2007 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI154929 A/chicken/Egypt/1709-4VIR08/2007 (A/H5N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%)
EPI373001 A/chicken/Egypt/9402-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%)
EPI372603 A/Egypt/4082-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI372597 A/Egypt/4226-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI276258 A/chicken/Egypt/9402-CLEVB213/2007 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%)
EPI259629 A/duck/Egypt/D3Lu220/2007 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%)
EPI190434 A/chicken/Egypt/083/2008 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI169455 A/mute swan/France/06303/2006 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI169433 A/common pochard/France/06167/2006 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI124567 A/chicken/Egypt/3/2006 (A/H5N1) segment 2 (PB1) 3873.5 0.000000e+00 2203/2256 (97%)
EPI372665 A/Egypt/3300-NAMRU3/2008 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI372591 A/Egypt/902-NAMRU3/2007 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%)
EPI352563 A/chicken/Egypt/1/2008 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI314348 A/duck/Egypt/D2br10/2007 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI293942 A/Chicken/Turkey-Bitlis/09rs2841-93/2006 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI259628 A/duck/Egypt/D2Li449/2007 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI259627 A/duck/Egypt/D2Br111/2007 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI154935 A/chicken/Egypt/1709-5/2008 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI154909 A/chicken/Egypt/1709-1VIR08/2007 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI47138 A/chicken/Afghanistan/1207/2006 (A/H5N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)

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