Rhiza Labs FluTracker Forum

Several of the recent (2012) H3N2v sets of swine sequence (including another series from Illinois) match the H3N2v subclade found in the first ten 2011 human cases in 2011.

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LOCUS JX422553 1410 bp cRNA linear VRL 06-OCT-2012
DEFINITION Influenza A virus (A/swine/Illinois/A01241840/2012(H3N2)) segment 6
neuraminidase (NA) gene, complete cds.
ACCESSION JX422553
VERSION JX422553.1 GI:407359033
KEYWORDS .
SOURCE Influenza A virus (A/swine/Illinois/A01241840/2012(H3N2))
ORGANISM Influenza A virus (A/swine/Illinois/A01241840/2012(H3N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1410)
AUTHORS Gramer,M.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2012) USDA NAHLN Voluntary Swine Influenza
Surveillance, 1920 Dayton Ave., Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..1410
/organism="Influenza A virus
(A/swine/Illinois/A01241840/2012(H3N2))"
/mol_type="viral cRNA"
/strain="A/swine/Illinois/A01241840/2012"
/serotype="H3N2"
/host="swine"
/db_xref="taxon:1214816"
/segment="6"
/country="USA: Illinois"
/collection_date="27-Feb-2012"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFU09015.1"
/db_xref="GI:407359034"
/translation="MNPNQKIITIGSVSLIIATICFLMQIAILVTTVTLHFKQHDYNS
PPNNQAMLCEPTIIERNTTEIVYLTNTTIEKEICPKLAEYRNWSKPQCNITGFAPFSK
DNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNGHSNNTVHDRTPYRTLLM
NELGVPFHLGTRQVCMAWSSSSCHDGKAWLHVCITGNDNNATASFIYNGRLVDSIGSW
SKNILRTQESECVCINGICTVVMTDGSASGKADTKILFVEEGKIIHISTLSGSAQHVE
ECSCYPRFPGVRCVCRDNWKGSNRPIVDINVKNYSIVSSYVCSGLVGDTPRKSDSASS
SYCLDPNNEEGGHGVKGWAFDDGNDVWMGRTINETLRLGYETFKVIEGWSKANSKLQT
NRQVIVEKGDRSGYSGIFSVEGKSCINRCFYVELIRGRKEETKVWWTSNSIVVFCGTS
GTYGTGSWPDGADINLMPI"
misc_feature 1..1410
/db_xref="IRD:IRD-A01241840.6"
ORIGIN
1 atgaatccaa atcaaaagat aataacaatt ggctctgttt ctctcatcat tgccacaata
61 tgtttcctta tgcaaattgc tatcctagta actactgtaa cattacattt caagcagcat
121 gactacaact cccccccaaa caaccaagca atgctgtgtg aaccaacaat aatagaaaga
181 aacacaacag agattgtgta tttgaccaac accaccatag agaaagaaat atgccccaaa
241 ctagcagaat atagaaactg gtcaaagccg caatgtaaca ttacaggatt tgcacctttt
301 tctaaggaca attcaattcg gctttctgct ggtggggaca tctgggtgac aagagaacct
361 tatgtgtcat gcgatcctga caagtgttat caatttgccc ttgggcaggg aacaacctta
421 aacaacggac attccaataa cactgtacat gataggaccc cttatcgaac cctattgatg
481 aatgaattgg gtgttccatt tcatttagga accaggcaag tgtgcatggc atggtccagc
541 tcaagttgtc acgatggaaa agcatggctg catgtttgta taactgggaa tgataacaat
601 gcaacagcta gcttcattta caatgggagg cttgtagata gtattggttc atggtccaaa
661 aatatactca gaacccagga gtcggaatgc gtctgtatca atggaatctg tacagtagta
721 atgactgatg ggagcgcttc aggaaaagct gatactaaaa tactattcgt tgaggagggg
781 aagatcattc atattagcac attgtcagga agtgctcagc atgttgagga gtgctcctgt
841 tatcctcgat ttcctggtgt cagatgtgtc tgcagagaca actggaaagg ctccaatagg
901 cccatcgtag atataaatgt aaagaattat agcattgttt ccagttatgt atgctcagga
961 cttgttggag acacacccag aaaaagtgac agcgccagca gtagttattg cctagatcct
1021 aacaatgagg aaggtggtca tggggtgaaa ggctgggcct ttgatgatgg aaatgacgtg
1081 tggatgggaa ggacaatcaa cgagacgtta cgcttaggtt atgaaacctt caaagtcatt
1141 gaaggctggt ccaaagctaa ctccaaatta cagacaaata ggcaagtcat agttgaaaaa
1201 ggtgacaggt ccggttattc tggaattttc tccgttgaag gtaaaagctg catcaatcgg
1261 tgcttttatg tggagttgat aaggggaagg aaagaggaaa ctaaagtctg gtggacctca
1321 aacagtattg ttgtgttttg tggcacctca ggtacatatg gaacaggctc atggcctgat
1381 ggagcggata tcaatctcat gcctatataa

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EPI391421 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI391418 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI391384 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI391128 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI391122 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI390782 A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369050 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369039 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369024 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI367692 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI367691 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI367690 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI391124 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI390950 A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI384440 A/swine/Illinois/A01047360/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1400/1407 (99%)
EPI384421 A/swine/Illinois/A01047350/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1400/1407 (99%)
EPI384398 A/swine/Illinois/A01047996/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1400/1407 (99%)
EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI395333 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI391123 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI384578 A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1399/1407 (99%)
EPI384530 A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1399/1407 (99%)
EPI367809 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI384581 A/swine/Illinois/A01134702/2011 (A/H1N2) segment 6 (NA) 2553.2 0.000000e+00 1398/1407 (99%)
EPI391127 A/swine/Indiana/A01202621/2011 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI391090 A/swine/Indiana/A01202632/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI391089 A/swine/Indiana/A01202631/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI390951 A/swine/Ohio/A01049382/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI384551 A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1398/1407 (99%)
EPI384415 A/swine/Illinois/A01047397/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1398/1407 (99%)
EPI384336 A/swine/Minnesota/A01116364/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1398/1407 (99%)
EPI383852 A/swine/Texas/A01104013/2012 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI369161 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI369158 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI369066 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI369058 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367700 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367689 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367688 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367687 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367686 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367685 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367684 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367683 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367682 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367681 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367680 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367679 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367678 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367677 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367674 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367673 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367672 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI367671 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2549.5 0.000000e+00 1400/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2547.7 0.000000e+00 1399/1410 (99%)
EPI391579 A/swine/Illinois/A00857318a/2012 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI390956 A/swine/Minnesota/A01049404/2011 (A/H0) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI390783 A/swine/Minnesota/A01076123/2010 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI384372 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1397/1407 (99%)
EPI371302 A/swine/Illinois/A01201950/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI369172 A/swine/Illinois/A01201287/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI369165 A/swine/Illinois/A01134736/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI369164 A/swine/Illinois/A01134729/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI368357 A/swine/Illinois/A01047525/2010 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI367694 A/swine/Illinois/A01047518/2010 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2544.0 0.000000e+00 1399/1410 (99%)
EPI371685 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 6 (NA) 2540.3 0.000000e+00 1398/1410 (99%)
EPI369171 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 6 (NA) 2540.3 0.000000e+00 1398/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2540.3 0.000000e+00 1398/1410 (99%)
EPI391210 A/swine/Indiana/A01202792/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI390948 A/swine/Iowa/A01049344/2010 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI390860 A/swine/Indiana/A01203384/2012 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1398/1410 (99%)
EPI384613 A/swine/Illinois/A01116186/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1396/1407 (99%)
EPI384584 A/swine/Illinois/A01201151/2011 (A/H1N2) segment 6 (NA) 2538.4 0.000000e+00 1396/1407 (99%)

_________________
www.twitter.com/hniman

EPI391379 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI391032 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI391031 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI391028 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI369048 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI369037 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI369022 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI391369 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI391368 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI351662 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI351653 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI391047 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 4 (HA) 3112.7 0.000000e+00 1694/1699 (99%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI391404 A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI383850 A/swine/Texas/A01104013/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI366030 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI395334 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI388332 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI369064 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI369056 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI348782 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI346440 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI346432 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI346424 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3096.1 0.000000e+00 1691/1699 (99%)
EPI391413 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI347607 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI347604 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI346493 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI395328 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3090.6 0.000000e+00 1690/1699 (99%)
EPI396270 A/Indiana/133/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI394913 A/Indiana/132/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI388327 A/Indiana/14/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI395331 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3085.0 0.000000e+00 1689/1699 (99%)
EPI397006 A/Ohio/78/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396262 A/Indiana/127/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396254 A/Indiana/126/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395259 A/Ohio/35/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI394944 A/Maryland/22/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393306 A/Indiana/18/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392926 A/Maryland/20/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI391577 A/swine/Illinois/A00857318a/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI388352 A/Indiana/20/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI388346 A/Indiana/15/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI388298 A/Indiana/19/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI388282 A/Indiana/13/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI383528 A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI367851 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1688/1699 (99%)
EPI397089 A/Indiana/52/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396299 A/Maryland/23/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396280 A/Indiana/144/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396208 A/Indiana/149/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396192 A/Ohio/77/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396183 A/Indiana/77/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396175 A/Ohio/80/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI395357 A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI395351 A/Michigan/20/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI395344 A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI395270 A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI395267 A/Ohio/65/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI394937 A/Ohio/75/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI394933 A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI394921 A/Ohio/69/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI394077 A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393914 A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393782 A/Ohio/74/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393702 A/Ohio/64/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393695 A/West Virginia/16/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393681 A/West Virginia/10/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393673 A/Ohio/71/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393519 A/Indiana/65/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393317 A/Ohio/38/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393311 A/West Virginia/09/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393299 A/Indiana/31/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI393298 A/Indiana/21/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI392748 A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI392735 A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI392702 A/Indiana/49/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI392696 A/Indiana/43/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI392693 A/Indiana/38/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI391043 A/swine/Indiana/A01202621/2011 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI390834 A/swine/Indiana/A01203372/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1689/1700 (99%)
EPI388362 A/Indiana/16/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI381427 A/swine/Ohio/7/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI381424 A/swine/Ohio/9/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI377542 A/swine/Ohio/1/2012 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI361495 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1688/1699 (99%)
EPI396277 A/Indiana/135/2012 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1687/1699 (99%)
EPI396200 A/Ohio/79/2012 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1687/1699 (99%)

_________________
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Align Segment-ID Name Score E-Value Identity
EPI391474 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391473 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391441 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391145 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391130 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391129 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI369051 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI369025 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI351657 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI344392 A/Indiana/10/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI344385 A/Indiana/10/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391131 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI369040 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI361459 A/swine/Missouri/A01047969/2010 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI342600 A/swine/NY/A01104005/2011 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI341732 A/swine/Iowa/A01202033/2011 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI341731 A/swine/Iowa/A01202034/2011 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI338531 A/swine/Iowa/A01049755/2011 (A/H1N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI338530 A/swine/Iowa/A01049765/2011 (A/H1N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI338529 A/swine/Iowa/A01049766/2011 (A/H1N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI384713 A/swine/Illinois/A01201633/2011 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI384712 A/swine/Illinois/A01201631/2011 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI384419 A/swine/Illinois/A01201629/2011 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI384323 A/swine/USA/10_182/2010 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI391340 A/swine/Iowa/A01202747/2011 (A/H1N2) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI391339 A/swine/Iowa/A01202745/2011 (A/H1N2) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI391230 A/swine/Iowa/A01202677/2011 (A/H1N2) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI361451 A/swine/Missouri/A01047968/2010 (A/H3N2) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI355002 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI384717 A/swine/Minnesota/A01201894/2011 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 975/979 (99%)
EPI384709 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 975/979 (99%)
EPI384457 A/swine/USA/11_174/2011 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 975/979 (99%)
EPI383545 A/swine/Iowa/A01203491/2012 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI380064 A/Singapore/GP875/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI379004 A/Singapore/GP2709/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI378566 A/Singapore/GP1022/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI371676 A/swine/Missouri/A01240016/2011 (A/H3N2) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI367704 A/swine/Missouri/A01240017/2011 (A/H3N2) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI324199 A/swine/MB/31/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI324183 A/swine/MB/10422/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI308456 A/Managua/WRAIR1693P/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI308400 A/Ft.Benning/WRAIR1669P/2009 (A/H1N1) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI300988 A/Nigeria/1938/2010 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI273787 A/Wisconsin/04/2010 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI273769 A/Honduras/6132/2010 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI272343 A/Guangdong/06/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI252549 A/Ontario/9698/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI239647 A/Minnesota/22/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI214088 A/Toronto/T9842/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI214080 A/Toronto/T5362/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186737 A/Canada-MB/RV2020/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186735 A/Canada-MB/RV2013/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186734 A/Canada-MB/RV1982/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186733 A/Canada-MB/RV1977/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186731 A/Canada-MB/RV1964/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI186718 A/Canada-MB/RV2023/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI183851 A/Larisa/1001/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI183850 A/Athens/992/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI183849 A/Athens/987/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI183175 A/Maine/03/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI182966 A/Athens/943/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI182964 A/Athens/924/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI182832 A/Athens/893/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI182418 A/Guangdong/03/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI181906 A/Athens/793/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI180276 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI179594 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%)
EPI384720 A/swine/Minnesota/A01201895/2011 (A/H3N2) segment 7 (MP) 1783.1 0.000000e+00 974/979 (99%)
EPI384450 A/swine/USA/11_160/2011 (A/H1N2) segment 7 (MP) 1781.3 0.000000e+00 974/979 (99%)
EPI303270 A/Canada-MB/RV2013-10/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 974/979 (99%)
EPI213980 A/Thailand/CU-B938/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 974/979 (99%)
EPI395529 A/Reunion/2969-5-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395528 A/Reunion/2923-3-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395527 A/Reunion/2692-2-M2E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395526 A/Reunion/2245-3-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395525 A/Reunion/2224-3-M3E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395524 A/Reunion/2133-6-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395523 A/Reunion/2133-5-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395522 A/Reunion/1722-8-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395521 A/Reunion/1722-7-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395520 A/Reunion/1709-4-M2E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395519 A/Reunion/1698-3-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395518 A/Reunion/1658-4-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395517 A/Reunion/1632-5-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395516 A/Reunion/1572-3-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395515 A/Reunion/0159-3-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI395514 A/Reunion/0148-4-M1E/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392446 A/Scotland/StAndrews_17693/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392438 A/Scotland/EastKilbride_425383/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392398 A/Scotland/EastKilbride_419809/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392388 A/Scotland/Inverness_418366/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392383 A/Scotland/Paisley_415110/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392365 A/Scotland/Aberdeen_416064/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392359 A/Scotland/Glasgow_445236/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392190 A/Scotland/Glasgow_422823/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392183 A/Scotland/Glasgow_420768/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392179 A/Scotland/Glasgow_420755/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392172 A/Scotland/Glasgow_419977/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392165 A/Scotland/Glasgow_419865/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)
EPI392158 A/Scotland/Glasgow_419707/2009 (A/H1N1) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%)

_________________
www.twitter.com/hniman

LOCUS JX422565 1410 bp cRNA linear VRL 06-OCT-2012
DEFINITION Influenza A virus (A/swine/Illinois/A01240836/2012(H3N2)) segment 6
neuraminidase (NA) gene, complete cds.
ACCESSION JX422565
VERSION JX422565.1 GI:407359061
KEYWORDS .
SOURCE Influenza A virus (A/swine/Illinois/A01240836/2012(H3N2))
ORGANISM Influenza A virus (A/swine/Illinois/A01240836/2012(H3N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1410)
AUTHORS Gramer,M.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2012) USDA NAHLN Voluntary Swine Influenza
Surveillance, 1920 Dayton Ave., Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..1410
/organism="Influenza A virus
(A/swine/Illinois/A01240836/2012(H3N2))"
/mol_type="viral cRNA"
/strain="A/swine/Illinois/A01240836/2012"
/serotype="H3N2"
/host="swine"
/db_xref="taxon:1196599"
/segment="6"
/country="USA: Illinois"
/collection_date="03-Jan-2012"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFU09031.1"
/db_xref="GI:407359062"
/translation="MNPNQKIITIGSVSLIIATICFLMQIAILVTTVTLHFKQHDYNS
PPNNQAMLCEPTIIERNTTEIVYLTNTTIEKEICPKLAEYRNWSKPQCNITGFAPFSK
DNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNGHSNNTVHDRTPYRTLLM
NELGVPFHLGTRQVCMAWSSSSCHDGKAWLHVCITGNDNNATASFIYNGRLVDSIGSW
SKNILRTQESECVCINGICTVVMTDGSASGKADTKILFVEEGKIIHISTLSGSAQHVE
ECSCYPRFPGVRCVCRDNWKGSNRPIVDINVKNYSIVSSYVCSGLVGDTPRKSDSVSS
SYCLDPNNEKGGHGVKGWAFDDGNDVWMGRTINETLRLGYETFKVIEGWSKANSKLQT
NRQVIVEKGDRSGYSGIFSVEGKSCINRCFYVELIRGRKEETKVWWTSNSIVVFCGTS
GTYGTGSWPDGADINLMPI"
misc_feature 1..1410
/db_xref="IRD:IRD-A01240836.6"
ORIGIN
1 atgaatccaa atcaaaagat aataacaatt ggctctgttt ctctcatcat tgccacaata
61 tgtttcctta tgcaaattgc tatcctagta actactgtaa cattacattt caagcagcat
121 gactacaact cccccccaaa caaccaagca atgctgtgtg aaccaacaat aatagaaaga
181 aacacaacag agattgtgta tttgaccaac accaccatag agaaagaaat atgccccaaa
241 ctagcagaat atagaaactg gtcaaagccg caatgtaaca ttacaggatt tgcacctttt
301 tctaaggaca attcaattcg gctttctgct ggtggggaca tctgggtgac aagagaacct
361 tatgtgtcat gcgatcctga caagtgttat caatttgccc ttgggcaggg aacaacctta
421 aacaacggac attcaaataa cactgtacat gataggaccc cttatcgaac cctattgatg
481 aatgaattgg gtgttccatt tcatttagga accaggcaag tgtgcatggc atggtccagc
541 tcaagttgtc acgatggaaa agcatggctg catgtttgta taactgggaa tgataacaat
601 gcaacagcta gcttcattta caatgggagg cttgtagata gtattggttc atggtccaaa
661 aatatactca gaacccagga gtcggaatgc gtctgtatca atggaatctg tacagtagta
721 atgactgatg ggagcgcttc aggaaaagct gatactaaaa tactattcgt tgaggagggg
781 aagatcattc atattagcac attgtcagga agtgctcagc atgttgagga gtgctcctgt
841 tatcctcgat ttcctggtgt cagatgtgtc tgcagagaca actggaaagg ctccaatagg
901 cccatcgtag atataaatgt aaagaattat agcattgttt ccagttatgt atgctcagga
961 cttgttggag acacacccag aaaaagtgac agcgtcagca gtagttattg cctagatcct
1021 aacaatgaga aaggtggtca tggggtgaaa ggctgggcct ttgatgatgg aaatgacgtg
1081 tggatgggaa ggacaatcaa cgagacgtta cgcttaggtt atgaaacctt caaagtcatt
1141 gaaggctggt ccaaagctaa ctccaaatta cagacaaata ggcaagtcat agttgaaaaa
1201 ggtgacaggt ccggttattc tggtattttc tccgttgaag gtaaaagctg catcaatcgg
1261 tgcttttatg tggagttgat aaggggaagg aaagaggaaa ctaaagtctg gtggacctca
1321 aacagtattg ttgtgttttg tggcacctca ggtacatatg gaacaggctc atggcctgat
1381 ggagcggata tcaatctcat gcctatataa

_________________
www.twitter.com/hniman

EPI391421 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI391418 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI391384 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI391128 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI391122 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI390782 A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369050 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369039 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369024 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI391124 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI390950 A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI367692 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI367691 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI367690 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI395333 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI391123 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI384578 A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI384530 A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI384440 A/swine/Illinois/A01047360/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI384421 A/swine/Illinois/A01047350/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI384398 A/swine/Illinois/A01047996/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI367809 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI391127 A/swine/Indiana/A01202621/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI391090 A/swine/Indiana/A01202632/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI391089 A/swine/Indiana/A01202631/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI390951 A/swine/Ohio/A01049382/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI384551 A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1402/1407 (99%)
EPI384415 A/swine/Illinois/A01047397/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1402/1407 (99%)
EPI384336 A/swine/Minnesota/A01116364/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1402/1407 (99%)
EPI383852 A/swine/Texas/A01104013/2012 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369161 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369158 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369066 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369058 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367700 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367689 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367688 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367687 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367686 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367685 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367684 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367683 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367682 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367681 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367680 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367679 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367678 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367677 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367674 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367673 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367672 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367671 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI384581 A/swine/Illinois/A01134702/2011 (A/H1N2) segment 6 (NA) 2569.8 0.000000e+00 1401/1407 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2569.8 0.000000e+00 1403/1410 (99%)
EPI391579 A/swine/Illinois/A00857318a/2012 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI390956 A/swine/Minnesota/A01049404/2011 (A/H0) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI390783 A/swine/Minnesota/A01076123/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI384372 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1401/1407 (99%)
EPI371302 A/swine/Illinois/A01201950/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369172 A/swine/Illinois/A01201287/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369165 A/swine/Illinois/A01134736/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369164 A/swine/Illinois/A01134729/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI368357 A/swine/Illinois/A01047525/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI367694 A/swine/Illinois/A01047518/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI371685 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 6 (NA) 2562.4 0.000000e+00 1402/1410 (99%)
EPI369171 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 6 (NA) 2562.4 0.000000e+00 1402/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2562.4 0.000000e+00 1402/1410 (99%)
EPI391210 A/swine/Indiana/A01202792/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI390948 A/swine/Iowa/A01049344/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI390860 A/swine/Indiana/A01203384/2012 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI384613 A/swine/Illinois/A01116186/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1400/1407 (99%)
EPI384584 A/swine/Illinois/A01201151/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1400/1407 (99%)

_________________
www.twitter.com/hniman

EPI391379 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%)
EPI391032 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI391031 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI391028 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI369048 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI369037 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI369022 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1697/1699 (99%)
EPI391369 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI391368 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI351662 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI351653 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 4 (HA) 3122.0 0.000000e+00 1696/1699 (99%)
EPI391047 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 4 (HA) 3118.3 0.000000e+00 1695/1699 (99%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%)
EPI391404 A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI383850 A/swine/Texas/A01104013/2012 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI366030 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1694/1699 (99%)
EPI395334 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI388332 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI369064 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI369056 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI348782 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI346440 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI346432 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI346424 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3101.6 0.000000e+00 1692/1699 (99%)
EPI391413 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI347607 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI347604 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI346493 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1692/1699 (99%)
EPI395328 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3096.1 0.000000e+00 1691/1699 (99%)
EPI396270 A/Indiana/133/2012 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI394913 A/Indiana/132/2012 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI388327 A/Indiana/14/2012 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3094.3 0.000000e+00 1691/1699 (99%)
EPI395331 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3090.6 0.000000e+00 1690/1699 (99%)
EPI397006 A/Ohio/78/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI396262 A/Indiana/127/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI396254 A/Indiana/126/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI395259 A/Ohio/35/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI394944 A/Maryland/22/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI393306 A/Indiana/18/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI392926 A/Maryland/20/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI391577 A/swine/Illinois/A00857318a/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI388352 A/Indiana/20/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI388346 A/Indiana/15/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI388298 A/Indiana/19/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI388282 A/Indiana/13/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI383528 A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI367851 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1690/1699 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3085.0 0.000000e+00 1689/1699 (99%)
EPI397089 A/Indiana/52/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396299 A/Maryland/23/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396280 A/Indiana/144/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396208 A/Indiana/149/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396192 A/Ohio/77/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396183 A/Indiana/77/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396175 A/Ohio/80/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395357 A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395351 A/Michigan/20/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395344 A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395270 A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI395267 A/Ohio/65/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI394937 A/Ohio/75/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI394933 A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI394921 A/Ohio/69/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI394077 A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393914 A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393782 A/Ohio/74/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393702 A/Ohio/64/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393695 A/West Virginia/16/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393681 A/West Virginia/10/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393673 A/Ohio/71/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393519 A/Indiana/65/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393317 A/Ohio/38/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393311 A/West Virginia/09/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393299 A/Indiana/31/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI393298 A/Indiana/21/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392748 A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392735 A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392702 A/Indiana/49/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392696 A/Indiana/43/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI392693 A/Indiana/38/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI391043 A/swine/Indiana/A01202621/2011 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI390834 A/swine/Indiana/A01203372/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1690/1700 (99%)
EPI388362 A/Indiana/16/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI381427 A/swine/Ohio/7/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI381424 A/swine/Ohio/9/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI377542 A/swine/Ohio/1/2012 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI361495 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1689/1699 (99%)
EPI396277 A/Indiana/135/2012 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1688/1699 (99%)
EPI396200 A/Ohio/79/2012 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1688/1699 (99%)

_________________
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EPI391474 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391473 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391441 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391145 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391130 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391129 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI369051 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI369025 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI351657 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI344392 A/Indiana/10/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI344385 A/Indiana/10/2011 (A/H3N2) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI391131 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI369040 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI361459 A/swine/Missouri/A01047969/2010 (A/H3N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI342600 A/swine/NY/A01104005/2011 (A/H3N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI341732 A/swine/Iowa/A01202033/2011 (A/H1N1 pdm09) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI341731 A/swine/Iowa/A01202034/2011 (A/H1N1 pdm09) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI338531 A/swine/Iowa/A01049755/2011 (A/H1N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI338530 A/swine/Iowa/A01049765/2011 (A/H1N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI338529 A/swine/Iowa/A01049766/2011 (A/H1N2) segment 7 (MP) 1807.1 0.000000e+00 980/981 (99%)
EPI384713 A/swine/Illinois/A01201633/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%)
EPI384712 A/swine/Illinois/A01201631/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%)
EPI384419 A/swine/Illinois/A01201629/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%)
EPI384323 A/swine/USA/10_182/2010 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%)
EPI391340 A/swine/Iowa/A01202747/2011 (A/H1N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391339 A/swine/Iowa/A01202745/2011 (A/H1N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI391230 A/swine/Iowa/A01202677/2011 (A/H1N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI361451 A/swine/Missouri/A01047968/2010 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI355002 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 7 (MP) 1801.6 0.000000e+00 979/981 (99%)
EPI384717 A/swine/Minnesota/A01201894/2011 (A/H3N2) segment 7 (MP) 1797.9 0.000000e+00 977/979 (99%)
EPI384709 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 7 (MP) 1797.9 0.000000e+00 977/979 (99%)
EPI384457 A/swine/USA/11_174/2011 (A/H1N1) segment 7 (MP) 1797.9 0.000000e+00 977/979 (99%)
EPI383545 A/swine/Iowa/A01203491/2012 (A/H1N1) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI371676 A/swine/Missouri/A01240016/2011 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI367704 A/swine/Missouri/A01240017/2011 (A/H3N2) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI324199 A/swine/MB/31/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI324183 A/swine/MB/10422/2009 (A/H1N1) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI308456 A/Managua/WRAIR1693P/2009 (A/H1N1) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI308400 A/Ft.Benning/WRAIR1669P/2009 (A/H1N1) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI273787 A/Wisconsin/04/2010 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI272343 A/Guangdong/06/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI252549 A/Ontario/9698/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI214088 A/Toronto/T9842/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI214080 A/Toronto/T5362/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186737 A/Canada-MB/RV2020/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186735 A/Canada-MB/RV2013/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186734 A/Canada-MB/RV1982/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186733 A/Canada-MB/RV1977/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186731 A/Canada-MB/RV1964/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI186718 A/Canada-MB/RV2023/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI183851 A/Larisa/1001/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI183850 A/Athens/992/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI183849 A/Athens/987/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI183175 A/Maine/03/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI182966 A/Athens/943/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI182964 A/Athens/924/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI182832 A/Athens/893/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI182418 A/Guangdong/03/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI181906 A/Athens/793/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI180276 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI179594 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1796.1 0.000000e+00 978/981 (99%)
EPI384720 A/swine/Minnesota/A01201895/2011 (A/H3N2) segment 7 (MP) 1794.2 0.000000e+00 976/979 (99%)
EPI384450 A/swine/USA/11_160/2011 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI303270 A/Canada-MB/RV2013-10/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI213980 A/Thailand/CU-B938/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 976/979 (99%)
EPI395529 A/Reunion/2969-5-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395528 A/Reunion/2923-3-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395527 A/Reunion/2692-2-M2E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395526 A/Reunion/2245-3-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395525 A/Reunion/2224-3-M3E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395524 A/Reunion/2133-6-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395523 A/Reunion/2133-5-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395522 A/Reunion/1722-8-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395521 A/Reunion/1722-7-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395520 A/Reunion/1709-4-M2E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395519 A/Reunion/1698-3-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395518 A/Reunion/1658-4-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395517 A/Reunion/1632-5-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395516 A/Reunion/1572-3-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395515 A/Reunion/0159-3-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI395514 A/Reunion/0148-4-M1E/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392446 A/Scotland/StAndrews_17693/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392438 A/Scotland/EastKilbride_425383/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392398 A/Scotland/EastKilbride_419809/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392388 A/Scotland/Inverness_418366/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392383 A/Scotland/Paisley_415110/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392365 A/Scotland/Aberdeen_416064/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392359 A/Scotland/Glasgow_445236/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392190 A/Scotland/Glasgow_422823/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392183 A/Scotland/Glasgow_420768/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392179 A/Scotland/Glasgow_420755/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392172 A/Scotland/Glasgow_419977/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392165 A/Scotland/Glasgow_419865/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392158 A/Scotland/Glasgow_419707/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392151 A/Scotland/Glasgow_414473/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392145 A/Scotland/Glasgow_414159/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392139 A/Scotland/Glasgow_413941/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392132 A/Scotland/Glasgow_413886/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392124 A/Scotland/Paisley_413869/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)
EPI392118 A/Scotland/Glasgow_413848/2009 (A/H1N1) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%)

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LOCUS JX657837 1410 bp cRNA linear VRL 06-OCT-2012
DEFINITION Influenza A virus (A/swine/Illinois/A01240908/2012(H3N2)) segment 6
neuraminidase (NA) gene, complete cds.
ACCESSION JX657837
VERSION JX657837.1 GI:407361230
KEYWORDS .
SOURCE Influenza A virus (A/swine/Illinois/A01240908/2012(H3N2))
ORGANISM Influenza A virus (A/swine/Illinois/A01240908/2012(H3N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1410)
AUTHORS Gramer,M.
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2012) USDA NAHLN Voluntary Swine Influenza
Surveillance, 1920 Dayton Ave., Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..1410
/organism="Influenza A virus
(A/swine/Illinois/A01240908/2012(H3N2))"
/mol_type="viral cRNA"
/strain="A/swine/Illinois/A01240908/2012"
/serotype="H3N2"
/host="swine"
/db_xref="taxon:1231151"
/segment="6"
/country="USA: Illinois"
/collection_date="03-Jan-2012"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFU10225.1"
/db_xref="GI:407361231"
/translation="MNPNQKIITIGSVSLIIATICFLMQIAILVTTVTLHFKQHDYNS
PPNNQAMLCEPTIIERNTTEIVYLTNXTIEKEICPKLAEYRNWSKPQCNITGFAPFSK
DNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNGHSNNTVHDRTPYRTLLM
NELGVPFHLGTRQVCMAWSSSSCHDGKAWLHVCITGNDNNATASFIYNGRLVDSIGSW
SKNILRTQESECVCINGTCTVVMTDGSASGKADTKILFVEEGKIVHISTLSGSAQHVE
ECSCYPRFPGVRCVCRDNWKGSNRPIVDINVKNYSIVSSYVCSGLVGDTPRKSDSVSS
SYCLDPNNEKGGHGVKGWAFDDGNDVWMGRTINETLRLGYETFKVIEGWSKANSKLQT
NRQVIVEKGDRSGYSGIFSVEGKSCINRCFYVELIRGRKEETKVWWTSNSIVVFCGTS
GTYGTGSWPDGADINLMPI"
misc_feature 1..1410
/db_xref="IRD:IRD-A01240908.6"
ORIGIN
1 atgaatccaa atcaaaagat aataacaatt ggctctgttt ctctcatcat tgccacaata
61 tgtttcctta tgcaaattgc tatcctagta actactgtaa cattacattt caagcagcat
121 gactacaact cccccccaaa caaccaagca atgctgtgtg aaccaacaat aatagaaaga
181 aacacaacag agattgtgta tttgaccaac aycaccatag agaaagaaat atgccccaaa
241 ctagcagaat atagaaactg gtcaaagccg caatgtaaca ttacaggatt tgcacctttt
301 tctaaggaca attcaattcg gctttctgct ggtggggaca tctgggtgac aagagaacct
361 tatgtgtcat gcgatcctga caagtgttat caatttgccc ttgggcaggg aacaacatta
421 aacaacggac attcaaataa cactgtacat gataggaccc cttatcgaac cctattgatg
481 aatgaattgg gtgttccatt tcatttagga accaggcaag tgtgcatggc atggtccagc
541 tcaagttgtc acgatggaaa agcatggctg catgtttgta taactgggaa tgataacaat
601 gcaacagcta gcttcattta caatgggagg cttgtagata gtattggttc atggtccaaa
661 aatatactca gaacccagga gtcggaatgc gtctgtatca atggaacctg tacagtagta
721 atgactgatg ggagcgcttc aggaaaagct gatactaaaa tactattcgt tgaggagggg
781 aagatcgttc atattagcac attgtcagga agtgctcagc atgttgagga gtgctcctgt
841 tatcctcgat ttcctggtgt cagatgtgtc tgcagagaca actggaaagg ctccaatagg
901 cccatcgtag atataaatgt aaagaattat agcattgttt ccagttatgt atgctcagga
961 cttgttggag acacacccag aaaaagtgac agcgtcagca gtagttattg cctagatcct
1021 aacaatgaga aaggtggtca tggggtgaaa ggctgggcct ttgatgatgg aaatgacgtg
1081 tggatgggaa ggacaatcaa cgagacgtta cgcttaggtt atgaaacctt caaagtcatt
1141 gaaggctggt ccaaagctaa ctccaaatta cagacaaata ggcaagtcat agttgaaaaa
1201 ggtgacaggt ccggttattc tggtattttc tccgttgaag gtaaaagctg catcaatcgg
1261 tgcttttatg tggagttgat aaggggaagg aaagaggaaa ctaaagtctg gtggacctca
1321 aacagtattg ttgtgttttg tggcacctca ggtacatatg gaacaggctc atggcctgat
1381 ggagcggata tcaatctcat gcctatataa

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