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niman
PostPosted: Mon Jun 25, 2012 6:37 am 
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Posts: 27351
Location: Pittsburgh, PA USA
The full set of H5N1 sequences from Fouchier ferrets have been released at Genbank (and GISAID).

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niman
PostPosted: Mon Jun 25, 2012 6:57 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 HA matches at GISAID

EPI376537 A/Indonesia/5/2005 (A/H5N1) segment 4 (HA) 3153.4 0.000000e+00 1707/1707 (100%)
EPI116487 A/Indonesia/5/2005 (A/H5N1) segment 4 (HA) 3147.8 0.000000e+00 1706/1707 (99%)
EPI181390 A/Indonesia/5/2005 (A/H5N1) segment 4 (HA) 3142.3 0.000000e+00 1705/1707 (99%)
EPI124067 A/Indonesia/5/2005 (A/H5N1) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%)
EPI376585 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI376578 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI376571 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI376564 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI376557 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI226651 A/Chicken/Murao Jambi/BBPV-II/2005 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI119998 A/Indonesia/TLL007/2006 (A/H5N1) segment 4 (HA) 3125.7 0.000000e+00 1702/1707 (99%)
EPI376545 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 4 (HA) 3114.6 0.000000e+00 1700/1707 (99%)
EPI226652 A/Chicken/Pakun Baru/BPPV-II/2005 (A/H5N1) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%)
EPI225050 A/chicken/West Java/TASIKSOB/2006 (A/H5N1) segment 4 (HA) 3114.6 0.000000e+00 1700/1707 (99%)
EPI224608 A/Chicken/West Java/TASIKSOL/2006 (A/H5N1) segment 4 (HA) 3114.6 0.000000e+00 1700/1707 (99%)
EPI123831 A/Chicken/Indonesia/Rejang Lebong1631-22/2006 (A/H5N1) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%)
EPI124201 A/Indonesia/283H/2006 (A/H5N1) segment 4 (HA) 3109.0 0.000000e+00 1699/1707 (99%)
EPI120006 A/Indonesia/TLL011/2006 (A/H5N1) segment 4 (HA) 3109.0 0.000000e+00 1699/1707 (99%)
EPI120004 A/Indonesia/TLL010/2006 (A/H5N1) segment 4 (HA) 3109.0 0.000000e+00 1699/1707 (99%)
EPI119996 A/Indonesia/TLL006/2006 (A/H5N1) segment 4 (HA) 3109.0 0.000000e+00 1699/1707 (99%)
EPI119994 A/Indonesia/TLL005/2006 (A/H5N1) segment 4 (HA) 3109.0 0.000000e+00 1699/1707 (99%)
EPI41399 A/Indonesia/CDC523/2006 (A/H5N1) segment 4 (HA) 3105.3 0.000000e+00 1698/1707 (99%)
EPI124217 A/Indonesia/286H/2006 (A/H5N1) segment 4 (HA) 3103.5 0.000000e+00 1698/1707 (99%)
EPI120000 A/Indonesia/TLL008/2006 (A/H5N1) segment 4 (HA) 3103.5 0.000000e+00 1698/1707 (99%)
EPI120002 A/Indonesia/TLL009/2006 (A/H5N1) segment 4 (HA) 3101.6 0.000000e+00 1697/1707 (99%)
EPI356515 A/chicken/West Java/Smi-Hay/2005 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%)
EPI224706 A/Muscovy Duck/Jakarta/HABWIN/2006 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1697/1707 (99%)
EPI124421 A/Indonesia/542H/2006 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1697/1707 (99%)
EPI123832 A/Chicken/Indonesia/Lampung1631-23/2006 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%)
EPI119990 A/Indonesia/TLL003/2006 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1697/1707 (99%)
EPI41820 A/Indonesia/CDC669P/2006 (A/H5N1) segment 4 (HA) 3098.0 0.000000e+00 1697/1707 (99%)
EPI124253 A/Indonesia/304H/2006 (A/H5N1) segment 4 (HA) 3096.1 0.000000e+00 1695/1704 (99%)
EPI124143 A/Indonesia/195H/2005 (A/H5N1) segment 4 (HA) 3096.1 0.000000e+00 1688/1694 (99%)
EPI41801 A/Indonesia/CDC669/2006 (A/H5N1) segment 4 (HA) 3094.3 0.000000e+00 1696/1707 (99%)
EPI321366 A/chicken/Magelang/BBVW-662-764/2007 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI321321 A/chicken/Flores Timur/BBVD-256/2007 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI321280 A/chicken/Badung/BBVD-175/2007 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI123828 A/Chicken/Indonesia/Belitung Timor1631-18/2006 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%)
EPI123734 A/Chicken/West Java/TASIK1/2006 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI123732 A/Chicken/West Java/TASIK2/2006 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI49202 A/Indonesia/CDC835/2006 (A/H5N1) segment 4 (HA) 3092.4 0.000000e+00 1696/1707 (99%)
EPI124475 A/Indonesia/567H/2006 (A/H5N1) segment 4 (HA) 3088.7 0.000000e+00 1686/1693 (99%)
EPI119992 A/Indonesia/TLL004/2006 (A/H5N1) segment 4 (HA) 3088.7 0.000000e+00 1695/1707 (99%)
EPI356581 A/muscovy duck/Jakarta/Sum106/2006 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%)
EPI321749 A/peaceful dove/Badung/BBVD-493/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321408 A/chicken/Tabanan/BBVD-339/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321339 A/chicken/Klungkung/BBVD-417/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321335 A/chicken/Jembrana/BBVD-298b/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321334 A/chicken/Jembrana/BBVD-298/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321333 A/chicken/Jembrana/BBVD-273/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321293 A/chicken/Bangli/BBVD-387ab/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321292 A/chicken/Bangli/BBVD-343/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321287 A/chicken/Badung/BBVD-319ac/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321283 A/chicken/Badung/BBVD-219/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321282 A/chicken/Badung/BBVD-216/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI321281 A/chicken/Badung/BBVD-205/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI234502 A/Swan/Indonesia/Malang1631-61/2007 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%)
EPI123833 A/Muscovy Duck/Indonesia/Kedri1631-24/2006 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%)
EPI49240 A/Indonesia/CDC836T/2006 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI49221 A/Indonesia/CDC836/2006 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI41839 A/Indonesia/CDC699/2006 (A/H5N1) segment 4 (HA) 3086.9 0.000000e+00 1695/1707 (99%)
EPI124271 A/Indonesia/292H/2006 (A/H5N1) segment 4 (HA) 3083.2 0.000000e+00 1687/1696 (99%)
EPI41948 A/Indonesia/CDC759/2006 (A/H5N1) segment 4 (HA) 3083.2 0.000000e+00 1694/1707 (99%)
EPI321750 A/peaceful dove/Denpasar/BBVD-480/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321583 A/duck/Sleman/BBVW-599-33290/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321581 A/duck/Sleman/BBVW-599-33288/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321579 A/duck/Sleman/BBVW-598-32237/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321543 A/duck/Magelang/BBVW-604-44402/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321541 A/duck/Magelang/BBVW-604-44401/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321520 A/duck/Bantul/BBVW-358-24381/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321399 A/chicken/Sleman/BBVW-626-234/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321397 A/chicken/Sleman/BBVW-626-233/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321351 A/chicken/Kulon Progo/BBVW-610-11020/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321341 A/chicken/Klungkung/BBVD-484/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321337 A/chicken/Klungkung/BBVD-225/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321318 A/chicken/Denpasar/BBVD-494/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321313 A/chicken/Denpasar/BBVD-291/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI321311 A/chicken/Denpasar/BBVD-145/2007 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1694/1707 (99%)
EPI123825 A/Chicken/Indonesia/Agam1631-3/2006 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%)
EPI41915 A/Indonesia/CDC739/2006 (A/H5N1) segment 4 (HA) 3081.3 0.000000e+00 1695/1708 (99%)
EPI321577 A/duck/Sleman/BBVW-598-32226/2007 (A/H5N1) segment 4 (HA) 3077.6 0.000000e+00 1693/1707 (99%)
EPI123728 A/Quail/Jakarta/JU1/2006 (A/H5N1) segment 4 (HA) 3077.6 0.000000e+00 1686/1696 (99%)
EPI321582 A/duck/Sleman/BBVW-599-33289/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321576 A/duck/Sleman/BBVW-379-34423/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321409 A/chicken/Tabanan/BBVD-461/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321350 A/chicken/Kulon Progo/BBVW-610-11019/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321322 A/chicken/Gianyar/BBVD-429/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321306 A/chicken/Bantul/BBVW-482-22235/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321304 A/chicken/Bantul/BBVW-482-22233/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321300 A/chicken/Bantul/BBVW-446-24454/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321299 A/chicken/Bantul/BBVW-446-24453/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321298 A/chicken/Bantul/BBVW-446-24452/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI321294 A/chicken/Bangli/BBVD-555ab/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI234497 A/Pigeon/Indonesia/Rokhit1631-6/2006 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI123842 A/Chicken/Indonesia/Semerang1631-62/2007 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI123836 A/Chicken/Indonesia/Gunung Kidul1631-33/2006 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI123822 A/Chicken/Indonesia/Padang1631-1/2006 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%)
EPI49183 A/Indonesia/CDC940/2006 (A/H5N1) segment 4 (HA) 3075.8 0.000000e+00 1693/1707 (99%)
EPI124234 A/Indonesia/298H/2006 (A/H5N1) segment 4 (HA) 3072.1 0.000000e+00 1683/1693 (99%)
EPI321364 A/chicken/Magelang/BBVW-662-762A/2007 (A/H5N1) segment 4 (HA) 3070.3 0.000000e+00 1692/1707 (99%)

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niman
PostPosted: Mon Jun 25, 2012 7:03 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 NA matches at GISAID

EPI376587 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376573 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376566 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376559 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376547 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376539 A/Indonesia/5/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI116489 A/Indonesia/5/2005 (A/H5N1) segment 6 (NA) 2374.1 0.000000e+00 1285/1285 (100%)
EPI376580 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 6 (NA) 2357.4 0.000000e+00 1282/1285 (99%)
EPI124069 A/Indonesia/5/2005 (A/H5N1) segment 6 (NA) 2357.4 0.000000e+00 1282/1285 (99%)
EPI124148 A/Indonesia/195H/2005 (A/H5N1) segment 6 (NA) 2351.9 0.000000e+00 1281/1285 (99%)
EPI123860 A/Chicken/Indonesia/Rejang Lebong1631-22/2006 (A/H5N1) segment 6 (NA) 2351.9 0.000000e+00 1281/1285 (99%)
EPI123672 A/Chicken/Duma/BPPV11/2005 (A/H5N1) segment 6 (NA) 2346.4 0.000000e+00 1280/1285 (99%)
EPI123664 A/Chicken/Murao Jambi/BPPV11/2005 (A/H5N1) segment 6 (NA) 2346.4 0.000000e+00 1280/1285 (99%)
EPI124276 A/Indonesia/292H/2006 (A/H5N1) segment 6 (NA) 2340.8 0.000000e+00 1279/1285 (99%)
EPI41215 A/feline/Indonesia/CDC1/2006 (A/H5N1) segment 6 (NA) 2340.8 0.000000e+00 1279/1285 (99%)
EPI124426 A/Indonesia/542H/2006 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1278/1285 (99%)
EPI49244 A/Indonesia/CDC836T/2006 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1278/1285 (99%)
EPI49225 A/Indonesia/CDC836/2006 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1278/1285 (99%)
EPI41223 A/Indonesia/CDC287E/2005 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1278/1285 (99%)
EPI41207 A/Indonesia/CDC357/2006 (A/H5N1) segment 6 (NA) 2335.3 0.000000e+00 1278/1285 (99%)
EPI124537 A/Indonesia/604H/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI124518 A/Indonesia/583H/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI124314 A/Indonesia/341H/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI124203 A/Indonesia/283H/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI124185 A/Indonesia/245H/2005 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI123850 A/Pigeon/Indonesia/Rohkit1631-6/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI123848 A/Chicken/Indonesia/Agam1631-3/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI123846 A/Chicken/Indonesia/Siak1631-2/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI123844 A/Chicken/Indonesia/Padang1631-1/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI123690 A/Duck/Indramayu/BBVW109/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI55780 A/Indonesia/CDC1047S/2007 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI55761 A/Indonesia/CDC1047/2007 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI55742 A/Indonesia/CDC1046T/2007 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI55723 A/Indonesia/CDC1046/2007 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41919 A/Indonesia/CDC739/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41851 A/Indonesia/CDC699/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41832 A/Indonesia/CDC669P/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41813 A/Indonesia/CDC669/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41604 A/Indonesia/CDC610/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41576 A/Indonesia/CDC582/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41557 A/Indonesia/CDC523T/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41538 A/Indonesia/CDC523E/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41403 A/Indonesia/CDC523/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41225 A/Indonesia/CDC326/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41219 A/Indonesia/CDC326N/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41217 A/Indonesia/CDC329/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41213 A/Indonesia/CDC390/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41205 A/Indonesia/CDC326T/2006 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41203 A/Indonesia/CDC292T/2005 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI41201 A/Indonesia/CDC292N/2005 (A/H5N1) segment 6 (NA) 2329.7 0.000000e+00 1277/1285 (99%)
EPI356584 A/muscovy duck/Jakarta/Sum106/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI356520 A/chicken/West Java/Smi-Hay/2005 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI226720 A/Indonesia/160H/2005 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI124480 A/Indonesia/567H/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI124295 A/Indonesia/321H/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI124219 A/Indonesia/286H/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI124091 A/Indonesia/7/2005 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI123864 A/Muscovy Duck/Indonesia/Kedri1631-24/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI123854 A/Chicken/Indonesia/Belitung Timor1631-18/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41952 A/Indonesia/CDC759/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41883 A/Indonesia/CDC644/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41864 A/Indonesia/CDC644T/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41221 A/Indonesia/CDC184/2005 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41211 A/Indonesia/CDC370E/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI41209 A/Indonesia/CDC370/2006 (A/H5N1) segment 6 (NA) 2324.2 0.000000e+00 1276/1285 (99%)
EPI356567 A/Muscovy duck/West Java/Bks3/2007 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI124110 A/Indonesia/175H/2005 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI123852 A/Chicken/Indonesia/Pekenbaru1631-11/2006 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI41756 A/Indonesia/CDC634T/2006 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI41737 A/Indonesia/CDC634P/2006 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI41718 A/Indonesia/CDC634/2006 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI41227 A/Indonesia/CDC194P/2005 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI41084 A/Indonesia/CDC7/2005 (A/H5N1) segment 6 (NA) 2318.7 0.000000e+00 1275/1285 (99%)
EPI356573 A/Muscovy duck/West Java/Bgr-Cw/2005 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI356568 A/chicken/Inhu/BPPVRII/2007 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI124499 A/Indonesia/569H/2006 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI123868 A/Chicken/Indonesia/Gunung Kidul1631-33/2006 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI55647 A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI55628 A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI55609 A/Indonesia/CDC1031T/2007 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI55590 A/Indonesia/CDC1031/2007 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI49187 A/Indonesia/CDC940/2006 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI41680 A/Indonesia/CDC624E/2006 (A/H5N1) segment 6 (NA) 2313.1 0.000000e+00 1274/1285 (99%)
EPI356519 A/chicken/Jakarta/DKI-Nurs/2007 (A/H5N1) segment 6 (NA) 2307.6 0.000000e+00 1273/1285 (99%)
EPI123872 A/Chicken/Indonesia/Bandung1631-49/2006 (A/H5N1) segment 6 (NA) 2307.6 0.000000e+00 1273/1285 (99%)
EPI123866 A/Quail/Indonesia/Sleman1631-25/2006 (A/H5N1) segment 6 (NA) 2307.6 0.000000e+00 1273/1285 (99%)
EPI123862 A/Chicken/Indonesia/Lampung1631-23/2006 (A/H5N1) segment 6 (NA) 2307.6 0.000000e+00 1273/1285 (99%)
EPI41661 A/Indonesia/CDC624/2006 (A/H5N1) segment 6 (NA) 2307.6 0.000000e+00 1273/1285 (99%)
EPI356585 A/duck/Jakarta/Slmt306/2006 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI356514 A/chicken/Pessel/BPPVRII/2007 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI235031 A/chicken/Indonesia/9/2003 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI235023 A/chicken/Indonesia/8/2003 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI123874 A/Chicken/Indonesia/Garut1631-51/2006 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI49268 A/Indonesia/CDC887/2006 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI49206 A/Indonesia/CDC835/2006 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI41938 A/Indonesia/CDC742/2006 (A/H5N1) segment 6 (NA) 2302.0 0.000000e+00 1272/1285 (98%)
EPI321547 A/duck/Magelang/BBVW-680-41043/2007 (A/H5N1) segment 6 (NA) 2296.5 0.000000e+00 1269/1282 (98%)
EPI321367 A/chicken/Magelang/BBVW-662-764/2007 (A/H5N1) segment 6 (NA) 2296.5 0.000000e+00 1269/1282 (98%)
EPI321362 A/chicken/Kulon Progo/BBVW-922-511/2007 (A/H5N1) segment 6 (NA) 2296.5 0.000000e+00 1269/1282 (98%)
EPI234715 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 6 (NA) 2296.5 0.000000e+00 1271/1285 (98%)

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niman
PostPosted: Mon Jun 25, 2012 7:10 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 PB2 matches at GISAID

EPI376534 A/Indonesia/5/2005 (A/H5N1) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI376555 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%)
EPI376553 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%)
EPI376550 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%)
EPI376542 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%)
EPI41056 A/Indonesia/5/2005 (A/H5N1) segment 1 (PB2) 4202.2 0.000000e+00 2278/2280 (99%)
EPI376554 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%)
EPI376552 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%)
EPI124326 A/Indonesia/341H/2006 (A/H5N1) segment 1 (PB2) 4150.5 0.000000e+00 2267/2277 (99%)
EPI41531 A/Indonesia/CDC390/2006 (A/H5N1) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%)
EPI41425 A/Indonesia/CDC194P/2005 (A/H5N1) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%)
EPI124122 A/Indonesia/175H/2005 (A/H5N1) segment 1 (PB2) 4137.6 0.000000e+00 2266/2280 (99%)
EPI229450 A/quail/Yogjakarta/UT1075/2004 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI229444 A/quail/Yogjakarta/UT1023/2004 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI124269 A/Indonesia/304H/2006 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2264/2277 (99%)
EPI41496 A/Indonesia/CDC357/2006 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI41486 A/Indonesia/CDC329/2006 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI41433 A/Indonesia/CDC287E/2005 (A/H5N1) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI124288 A/Indonesia/292H/2006 (A/H5N1) segment 1 (PB2) 4132.1 0.000000e+00 2265/2279 (99%)
EPI124178 A/Indonesia/239H/2005 (A/H5N1) segment 1 (PB2) 4130.2 0.000000e+00 2264/2278 (99%)
EPI124197 A/Indonesia/245H/2005 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41524 A/Indonesia/CDC370T/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41512 A/Indonesia/CDC370E/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41505 A/Indonesia/CDC370/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41482 A/Indonesia/CDC326T/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41470 A/Indonesia/CDC326N/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41461 A/Indonesia/CDC326/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41449 A/Indonesia/CDC292N/2005 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41442 A/Indonesia/CDC287T/2005 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI41414 A/feline/Indonesia/CDC1/2006 (A/H5N1) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI124215 A/Indonesia/283H/2006 (A/H5N1) segment 1 (PB2) 4124.7 0.000000e+00 2263/2278 (99%)
EPI181590 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI181583 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI181577 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI181576 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI41477 A/Indonesia/CDC326N2/2006 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI41451 A/Indonesia/CDC292T/2005 (A/H5N1) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI226994 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI181579 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI181578 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI41514 A/Indonesia/CDC370P/2006 (A/H5N1) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI227091 A/Chicken/Wajo/BBVM/2005 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2260/2277 (99%)
EPI41637 A/Indonesia/CDC623E/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI41618 A/Indonesia/CDC623/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI41599 A/Indonesia/CDC610/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI41569 A/Indonesia/CDC523T/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI41550 A/Indonesia/CDC523E/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI41392 A/Indonesia/CDC523/2006 (A/H5N1) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI124436 A/Indonesia/542H/2006 (A/H5N1) segment 1 (PB2) 4109.9 0.000000e+00 2261/2279 (99%)
EPI226959 A/chicken/Gunung Kidal/BBVW/2005 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI41927 A/Indonesia/CDC742/2006 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI41827 A/Indonesia/CDC669P/2006 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI41808 A/Indonesia/CDC669/2006 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI41675 A/Indonesia/CDC624E/2006 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI41656 A/Indonesia/CDC624/2006 (A/H5N1) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%)
EPI227154 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%)
EPI124511 A/Indonesia/569H/2006 (A/H5N1) segment 1 (PB2) 4100.7 0.000000e+00 2258/2277 (99%)
EPI49195 A/Indonesia/CDC835/2006 (A/H5N1) segment 1 (PB2) 4100.7 0.000000e+00 2261/2281 (99%)
EPI41846 A/Indonesia/CDC699/2006 (A/H5N1) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%)
EPI49252 A/Indonesia/CDC759/2006 (A/H5N1) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI49176 A/Indonesia/CDC940/2006 (A/H5N1) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI41588 A/Indonesia/CDC582/2006 (A/H5N1) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI124251 A/Indonesia/298H/2006 (A/H5N1) segment 1 (PB2) 4087.8 0.000000e+00 2233/2243 (99%)
EPI234720 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%)
EPI234712 A/Ck/Indonesia/BL/2003 (A/H5N1) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%)
EPI41751 A/Indonesia/CDC634T/2006 (A/H5N1) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%)
EPI41732 A/Indonesia/CDC634P/2006 (A/H5N1) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%)
EPI41713 A/Indonesia/CDC634/2006 (A/H5N1) segment 1 (PB2) 4080.4 0.000000e+00 2256/2280 (98%)
EPI235015 A/chicken/Indonesia/11/2003 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI181569 A/chicken/West Java/UT1001/2003 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI124530 A/Indonesia/583H/2006 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2248/2268 (99%)
EPI49233 A/Indonesia/CDC836T/2006 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI49214 A/Indonesia/CDC836/2006 (A/H5N1) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI228787 A/quail/Yogjakarta/BBVet-IX/2004 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI103397 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI103395 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI103391 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI103385 A/chicken/Bangli Bali/BBPV6-1/2004 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI49257 A/Indonesia/CDC887/2006 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI41908 A/Indonesia/CDC739/2006 (A/H5N1) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI124352 A/Indonesia/567H/2006 (A/H5N1) segment 1 (PB2) 4071.1 0.000000e+00 2254/2279 (98%)
EPI41875 A/Indonesia/CDC644T/2006 (A/H5N1) segment 1 (PB2) 4069.3 0.000000e+00 2254/2280 (98%)
EPI235117 A/chicken/Legok/2003 (A/H5N1) segment 1 (PB2) 4067.4 0.000000e+00 2254/2280 (98%)
EPI228777 A/Chicken/Yogjakarta/BBVet-IX/2004 (A/H5N1) segment 1 (PB2) 4067.4 0.000000e+00 2252/2277 (98%)
EPI41894 A/Indonesia/CDC644/2006 (A/H5N1) segment 1 (PB2) 4067.4 0.000000e+00 2254/2280 (98%)
EPI181570 A/chicken/East Java/UT1006/2003 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2253/2280 (98%)
EPI164762 A/Indonesia/7379/2008 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2254/2281 (98%)
EPI124093 A/Indonesia/7/2005 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2253/2280 (98%)
EPI103387 A/chicken/Bangli Bali/BPPV6-2/2004 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2254/2281 (98%)
EPI41075 A/Indonesia/CDC7/2005 (A/H5N1) segment 1 (PB2) 4061.9 0.000000e+00 2253/2280 (98%)
EPI226725 A/Indonesia/160H/2005 (A/H5N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI181591 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI181589 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI181584 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI227029 A/Chicken/Salatiga/BBVet-I/2005 (A/H5N1) segment 1 (PB2) 4050.8 0.000000e+00 2249/2277 (98%)
EPI49138 A/Indonesia/CDC938/2006 (A/H5N1) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI41421 A/Indonesia/CDC184/2005 (A/H5N1) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI41111 A/chicken/Indonesia/CDC24/2005 (A/H5N1) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI124492 A/Indonesia/604H/2006 (A/H5N1) segment 1 (PB2) 4047.1 0.000000e+00 2227/2245 (99%)
EPI181585 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)

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niman
PostPosted: Mon Jun 25, 2012 7:14 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 PB1 matches

EPI376535 A/Indonesia/5/2005 (A/H5N1) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%)
EPI41062 A/Indonesia/5/2005 (A/H5N1) segment 2 (PB1) 4196.7 0.000000e+00 2273/2274 (99%)
EPI376562 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%)
EPI376543 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%)
EPI376583 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI376576 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI376569 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI376551 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI124157 A/Indonesia/195H/2005 (A/H5N1) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI41653 A/Indonesia/CDC624/2006 (A/H5N1) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI124508 A/Indonesia/569H/2006 (A/H5N1) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%)
EPI41672 A/Indonesia/CDC624E/2006 (A/H5N1) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%)
EPI226724 A/Indonesia/160H/2005 (A/H5N1) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%)
EPI124095 A/Indonesia/7/2005 (A/H5N1) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%)
EPI41427 A/Indonesia/CDC194P/2005 (A/H5N1) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%)
EPI41077 A/Indonesia/CDC7/2005 (A/H5N1) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%)
EPI41634 A/Indonesia/CDC623E/2006 (A/H5N1) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%)
EPI41615 A/Indonesia/CDC623/2006 (A/H5N1) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%)
EPI41418 A/Indonesia/CDC184/2005 (A/H5N1) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%)
EPI124119 A/Indonesia/175H/2005 (A/H5N1) segment 2 (PB1) 4093.3 0.000000e+00 2242/2255 (99%)
EPI229451 A/quail/Yogjakarta/UT1075/2004 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI229445 A/quail/Yogjakarta/UT1023/2004 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI181566 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI181555 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI181554 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%)
EPI235116 A/chicken/Legok/2003 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI227160 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI181559 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI181553 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI181552 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI181546 A/chicken/East Java/UT1006/2003 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI181545 A/chicken/West Java/UT1001/2003 (A/H5N1) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%)
EPI226965 A/chicken/Gunung Kidal/BBVW/2005 (A/H5N1) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%)
EPI227000 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%)
EPI234711 A/Ck/Indonesia/BL/2003 (A/H5N1) segment 2 (PB1) 4043.4 0.000000e+00 2244/2271 (98%)
EPI235027 A/chicken/Indonesia/8/2003 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI235019 A/chicken/Indonesia/7/2003 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI227026 A/chicken/Purworejo/BBVW/2005 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI221752 A/chicken/Indonesia/3/2007 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI181551 A/duck/East Java/UT1107/2004 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI181549 A/duck/East Java/UT1046/2004 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI181548 A/chicken/East Kalimantan/UT1035/2004 (A/H5N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
EPI234719 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%)
EPI135857 A/duck/Hunan/795/2002 (A/H5N1) segment 2 (PB1) 4030.5 0.000000e+00 2238/2266 (98%)
EPI235035 A/chicken/Indonesia/9/2003 (A/H5N1) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%)
EPI228429 A/Dk/Indonesia/MS/2004 (A/H5N1) segment 2 (PB1) 4026.8 0.000000e+00 2238/2267 (98%)
EPI181563 A/chicken/East Java/UT6044/2007 (A/H5N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI135933 A/duck/Hunan/782/2003 (A/H5N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI41526 A/Indonesia/CDC390/2006 (A/H5N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI181564 A/chicken/East Java/UT6045/2007 (A/H5N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%)
EPI226984 A/chicken/Kulon Progo/BBVW/2005 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI181567 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI181565 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI181561 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI181560 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%)
EPI124323 A/Indonesia/341H/2006 (A/H5N1) segment 2 (PB1) 4001.0 0.000000e+00 2235/2269 (98%)
EPI41094 A/chicken/Indonesia/CDC25/2005 (A/H5N1) segment 2 (PB1) 3997.3 0.000000e+00 2237/2274 (98%)
EPI235014 A/chicken/Indonesia/11/2003 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI41521 A/Indonesia/CDC370T/2006 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI41516 A/Indonesia/CDC370P/2006 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI41509 A/Indonesia/CDC370E/2006 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI41502 A/Indonesia/CDC370/2006 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI41113 A/chicken/Indonesia/CDC24/2005 (A/H5N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI271744 A/swine/East Java/UT6010/2007 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI235762 A/chicken/Hong Kong/409.1/2002 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2237/2275 (98%)
EPI135990 A/duck/Hunan/733/2004 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%)
EPI135838 A/chicken/Hunan/23/2002 (A/H5N1) segment 2 (PB1) 3989.9 0.000000e+00 2234/2271 (98%)
EPI235048 A/chicken/Jilin/hj/2003 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI139802 A/Ck/HK/YU22/2002 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%)
EPI135971 A/duck/Hunan/533/2004 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI124248 A/Indonesia/298H/2006 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI21330 A/duck/Guangxi/50/2001 (A/H5N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI271728 A/swine/East Java/UT6005/2006 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI271720 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI271704 A/swine/Banten/UT6001/2006 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI235192 A/Mallard/Huadong/Y/2003 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI135572 A/quail/Shantou/3846/2002 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%)
EPI124084 A/Indonesia/6/2005 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI26485 A/Chicken/Henan/16/2004 (A/H5N1) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%)
EPI181568 A/chicken/South Kalimantan/UT6028/2006 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2234/2275 (98%)
EPI181556 A/chicken/Central Java/UT3091/2005 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI124304 A/Indonesia/321H/2006 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2229/2268 (98%)
EPI106091 A/wild duck/Shanghai/59/04 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI41493 A/Indonesia/CDC357/2006 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI41437 A/Indonesia/CDC287T/2005 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI41430 A/Indonesia/CDC287E/2005 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI26489 A/swan/Guangxi/307/2004 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI1133 A/crow/Osaka/102/2004 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI1113 A/crow/Kyoto/53/2004 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI1095 A/chicken/Kyoto/3/2004 (A/H5N1) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%)
EPI124266 A/Indonesia/304H/2006 (A/H5N1) segment 2 (PB1) 3971.4 0.000000e+00 2228/2267 (98%)
EPI271696 A/swine/Banten/UT3081/2005 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2234/2276 (98%)
EPI271688 A/swine/Banten/UT3063/2005 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2234/2276 (98%)
EPI271680 A/swine/Banten/UT3062/2005 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2234/2276 (98%)
EPI271672 A/swine/Banten/UT2071/2005 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2234/2276 (98%)
EPI235133 A/duck/Hubei/wp/2003 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%)
EPI229677 A/chicken/Yamaguchi/7/2004 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%)
EPI228851 A/mallard/Guangxi/wt/2004 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%)
EPI168465 A/duck/Vietnam/NCVD1/2003 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%)
EPI139815 A/teal/China/2978.1/2002 (A/H5N1) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%)

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niman
PostPosted: Mon Jun 25, 2012 7:20 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 PA matches at GISAID

EPI376584 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI376577 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI376570 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI376544 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI376536 A/Indonesia/5/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI41065 A/Indonesia/5/2005 (A/H5N1) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI376563 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%)
EPI376556 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%)
EPI124155 A/Indonesia/195H/2005 (A/H5N1) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%)
EPI41472 A/Indonesia/CDC326N2/2006 (A/H5N1) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%)
EPI41468 A/Indonesia/CDC326N/2006 (A/H5N1) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%)
EPI124283 A/Indonesia/292H/2006 (A/H5N1) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI41491 A/Indonesia/CDC329/2006 (A/H5N1) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI41484 A/Indonesia/CDC326T/2006 (A/H5N1) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI41463 A/Indonesia/CDC326/2006 (A/H5N1) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI41416 A/feline/Indonesia/CDC1/2006 (A/H5N1) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI41594 A/Indonesia/CDC610/2006 (A/H5N1) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI41435 A/Indonesia/CDC287E/2005 (A/H5N1) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI41060 A/Indonesia/CDC7/2005 (A/H5N1) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI124075 A/Indonesia/283H/2006 (A/H5N1) segment 3 (PA) 3921.6 0.000000e+00 2139/2147 (99%)
EPI124525 A/Indonesia/583H/2006 (A/H5N1) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI41946 A/Indonesia/CDC759/2006 (A/H5N1) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI41822 A/Indonesia/CDC669P/2006 (A/H5N1) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI41803 A/Indonesia/CDC669/2006 (A/H5N1) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI41498 A/Indonesia/CDC357/2006 (A/H5N1) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI124431 A/Indonesia/542H/2006 (A/H5N1) segment 3 (PA) 3914.2 0.000000e+00 2137/2146 (99%)
EPI124229 A/Indonesia/286H/2006 (A/H5N1) segment 3 (PA) 3914.2 0.000000e+00 2137/2146 (99%)
EPI124264 A/Indonesia/304H/2006 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI124098 A/Indonesia/7/2005 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2134/2142 (99%)
EPI49181 A/Indonesia/CDC940/2006 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI41529 A/Indonesia/CDC390/2006 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI41453 A/Indonesia/CDC292T/2005 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI41444 A/Indonesia/CDC292N/2005 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI41440 A/Indonesia/CDC287T/2005 (A/H5N1) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI49200 A/Indonesia/CDC835/2006 (A/H5N1) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI41564 A/Indonesia/CDC523T/2006 (A/H5N1) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI41397 A/Indonesia/CDC523/2006 (A/H5N1) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI41423 A/Indonesia/CDC184/2005 (A/H5N1) segment 3 (PA) 3904.9 0.000000e+00 2138/2151 (99%)
EPI41913 A/Indonesia/CDC739/2006 (A/H5N1) segment 3 (PA) 3903.1 0.000000e+00 2138/2151 (99%)
EPI181542 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI181531 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI181530 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI41583 A/Indonesia/CDC582/2006 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI41545 A/Indonesia/CDC523E/2006 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI41507 A/Indonesia/CDC370E/2006 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI41500 A/Indonesia/CDC370/2006 (A/H5N1) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI181537 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI49219 A/Indonesia/CDC836/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI41932 A/Indonesia/CDC742/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI41670 A/Indonesia/CDC624E/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI41632 A/Indonesia/CDC623E/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI41519 A/Indonesia/CDC370P/2006 (A/H5N1) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI41651 A/Indonesia/CDC624/2006 (A/H5N1) segment 3 (PA) 3892.0 0.000000e+00 2136/2151 (99%)
EPI124246 A/Indonesia/298H/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI49238 A/Indonesia/CDC836T/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI41746 A/Indonesia/CDC634T/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI41727 A/Indonesia/CDC634P/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI41708 A/Indonesia/CDC634/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI41613 A/Indonesia/CDC623/2006 (A/H5N1) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI41873 A/Indonesia/CDC644T/2006 (A/H5N1) segment 3 (PA) 3886.5 0.000000e+00 2135/2151 (99%)
EPI124544 A/Indonesia/604H/2006 (A/H5N1) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI124487 A/Indonesia/567H/2006 (A/H5N1) segment 3 (PA) 3884.6 0.000000e+00 2133/2148 (99%)
EPI41892 A/Indonesia/CDC644/2006 (A/H5N1) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI41841 A/Indonesia/CDC699/2006 (A/H5N1) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI181543 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI181541 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI181536 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI181535 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI181529 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI181528 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI229452 A/quail/Yogjakarta/UT1075/2004 (A/H5N1) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI229446 A/quail/Yogjakarta/UT1023/2004 (A/H5N1) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI124173 A/Indonesia/239H/2005 (A/H5N1) segment 3 (PA) 3868.0 0.000000e+00 2110/2118 (99%)
EPI41097 A/chicken/Indonesia/CDC25/2005 (A/H5N1) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI181544 A/chicken/South Kalimantan/UT6028/2006 (A/H5N1) segment 3 (PA) 3860.6 0.000000e+00 2130/2150 (99%)
EPI49143 A/Indonesia/CDC938/2006 (A/H5N1) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%)
EPI181540 A/chicken/East Java/UT6045/2007 (A/H5N1) segment 3 (PA) 3855.1 0.000000e+00 2129/2150 (99%)
EPI271743 A/swine/East Java/UT6010/2007 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2130/2152 (98%)
EPI271727 A/swine/East Java/UT6005/2006 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2130/2152 (98%)
EPI271719 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2130/2152 (98%)
EPI271703 A/swine/Banten/UT6001/2006 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2130/2152 (98%)
EPI181539 A/chicken/East Java/UT6044/2007 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2131/2153 (98%)
EPI124192 A/Indonesia/245H/2005 (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2107/2118 (99%)
EPI227097 A/Chicken/Wajo/BBVM/2005 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2104/2115 (99%)
EPI124321 A/Indonesia/341H/2006 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2106/2118 (99%)
EPI55698 A/Indonesia/CDC1032T/2007 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)
EPI55660 A/Indonesia/CDC1032/2007 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)
EPI55641 A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)
EPI55622 A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)
EPI55603 A/Indonesia/CDC1031T/2007 (A/H5N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)
EPI124506 A/Indonesia/569H/2006 (A/H5N1) segment 3 (PA) 3844.0 0.000000e+00 2109/2123 (99%)
EPI49262 A/Indonesia/CDC887/2006 (A/H5N1) segment 3 (PA) 3844.0 0.000000e+00 2127/2151 (98%)
EPI164760 A/Indonesia/7379/2008 (A/H5N1) segment 3 (PA) 3840.3 0.000000e+00 2127/2151 (98%)
EPI55679 A/Indonesia/CDC1032N/2007 (A/H5N1) segment 3 (PA) 3840.3 0.000000e+00 2127/2151 (98%)
EPI227159 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 3 (PA) 3834.8 0.000000e+00 2104/2118 (99%)
EPI226999 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 3 (PA) 3834.8 0.000000e+00 2104/2118 (99%)
EPI181524 A/chicken/East Kalimantan/UT1035/2004 (A/H5N1) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%)
EPI124302 A/Indonesia/321H/2006 (A/H5N1) segment 3 (PA) 3834.8 0.000000e+00 2104/2118 (99%)
EPI124117 A/Indonesia/175H/2005 (A/H5N1) segment 3 (PA) 3832.9 0.000000e+00 2122/2146 (98%)
EPI221751 A/chicken/Indonesia/3/2007 (A/H5N1) segment 3 (PA) 3829.2 0.000000e+00 2125/2151 (98%)

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niman
PostPosted: Mon Jun 25, 2012 7:25 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 NP matches at GISAID

EPI376579 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI376538 A/Indonesia/5/2005 (A/H5N1) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI376565 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI376558 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI376546 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%)
EPI376586 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%)
EPI376572 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%)
EPI41067 A/Indonesia/5/2005 (A/H5N1) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%)
EPI41644 A/Indonesia/CDC623E/2006 (A/H5N1) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%)
EPI41625 A/Indonesia/CDC623/2006 (A/H5N1) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%)
EPI41682 A/Indonesia/CDC624E/2006 (A/H5N1) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI41253 A/Indonesia/CDC292T/2005 (A/H5N1) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI41231 A/Indonesia/CDC292N/2005 (A/H5N1) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
EPI124150 A/Indonesia/195H/2005 (A/H5N1) segment 5 (NP) 2719.4 0.000000e+00 1482/1487 (99%)
EPI226962 A/chicken/Gunung Kidal/BBVW/2005 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI124501 A/Indonesia/569H/2006 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1486/1494 (99%)
EPI41663 A/Indonesia/CDC624/2006 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI41255 A/feline/Indonesia/CDC1/2006 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI41251 A/Indonesia/CDC194P/2005 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI41247 A/Indonesia/CDC329/2006 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI41235 A/Indonesia/CDC326T/2006 (A/H5N1) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI227157 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181616 A/chicken/South Kalimantan/UT6028/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1488/1498 (99%)
EPI181615 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181614 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181613 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181607 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181603 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181601 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI181600 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI124428 A/Indonesia/542H/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41936 A/Indonesia/CDC742/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41853 A/Indonesia/CDC699/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41606 A/Indonesia/CDC610/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41239 A/Indonesia/CDC357/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41237 A/Indonesia/CDC326N/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI41233 A/Indonesia/CDC326/2006 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI226997 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI181608 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI181594 A/chicken/East Java/UT1006/2003 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI181593 A/chicken/West Java/UT1001/2003 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI124539 A/Indonesia/604H/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1484/1494 (99%)
EPI124278 A/Indonesia/292H/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI124224 A/Indonesia/286H/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1487/1498 (99%)
EPI124187 A/Indonesia/245H/2005 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1478/1485 (99%)
EPI55645 A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI55626 A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI55588 A/Indonesia/CDC1031/2007 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI49266 A/Indonesia/CDC887/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI49204 A/Indonesia/CDC835/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41559 A/Indonesia/CDC523T/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41540 A/Indonesia/CDC523E/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41401 A/Indonesia/CDC523/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41249 A/Indonesia/CDC287E/2005 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41245 A/Indonesia/CDC390/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41243 A/Indonesia/CDC370E/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI41241 A/Indonesia/CDC370/2006 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI124241 A/Indonesia/298H/2006 (A/H5N1) segment 5 (NP) 2700.9 0.000000e+00 1486/1497 (99%)
EPI271741 A/swine/East Java/UT6010/2007 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI271725 A/swine/East Java/UT6005/2006 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI271717 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI271701 A/swine/Banten/UT6001/2006 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI235032 A/chicken/Indonesia/9/2003 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI235024 A/chicken/Indonesia/8/2003 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI221749 A/chicken/Indonesia/3/2007 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI181611 A/chicken/East Java/UT6044/2007 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI181609 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI181602 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI55607 A/Indonesia/CDC1031T/2007 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI41578 A/Indonesia/CDC582/2006 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI41229 A/Indonesia/CDC184/2005 (A/H5N1) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
EPI124112 A/Indonesia/175H/2005 (A/H5N1) segment 5 (NP) 2697.2 0.000000e+00 1476/1484 (99%)
EPI235016 A/chicken/Indonesia/7/2003 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI181599 A/duck/East Java/UT1107/2004 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI181597 A/duck/East Java/UT1046/2004 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI124208 A/Indonesia/283H/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1483/1495 (99%)
EPI55778 A/Indonesia/CDC1047S/2007 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI55759 A/Indonesia/CDC1047/2007 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI55740 A/Indonesia/CDC1046T/2007 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI55721 A/Indonesia/CDC1046/2007 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41885 A/Indonesia/CDC644/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41866 A/Indonesia/CDC644T/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41834 A/Indonesia/CDC669P/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41758 A/Indonesia/CDC634T/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41739 A/Indonesia/CDC634P/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41720 A/Indonesia/CDC634/2006 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41101 A/chicken/Indonesia/CDC25/2005 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI41082 A/Indonesia/CDC7/2005 (A/H5N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI124316 A/Indonesia/341H/2006 (A/H5N1) segment 5 (NP) 2691.7 0.000000e+00 1477/1487 (99%)
EPI124297 A/Indonesia/321H/2006 (A/H5N1) segment 5 (NP) 2691.7 0.000000e+00 1477/1487 (99%)
EPI124168 A/Indonesia/239H/2005 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1473/1482 (99%)
EPI49242 A/Indonesia/CDC836T/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI49223 A/Indonesia/CDC836/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI49166 A/Indonesia/CDC938E/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI49147 A/Indonesia/CDC938/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI41950 A/Indonesia/CDC759/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI41815 A/Indonesia/CDC669/2006 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI25028 A/chicken/Guangdong/178/04 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI20151 A/duck/China/E319-2/03 (A/H5N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI124520 A/Indonesia/583H/2006 (A/H5N1) segment 5 (NP) 2686.1 0.000000e+00 1480/1493 (99%)

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niman
PostPosted: Mon Jun 25, 2012 7:31 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 MP matches at GISAID

EPI376588 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376581 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376574 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376567 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376560 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376548 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI376540 A/Indonesia/5/2005 (A/H5N1) segment 7 (MP) 1812.7 0.000000e+00 981/981 (100%)
EPI41069 A/Indonesia/5/2005 (A/H5N1) segment 7 (MP) 1807.1 0.000000e+00 978/978 (100%)
EPI227155 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI227093 A/Chicken/Wajo/BBVM/2005 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI226995 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI181470 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI181459 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI181458 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI124292 A/Indonesia/321H/2006 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI124236 A/Indonesia/298H/2006 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI41189 A/Indonesia/CDC370E/2006 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI41186 A/Indonesia/CDC370/2006 (A/H5N1) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%)
EPI226960 A/chicken/Gunung Kidal/BBVW/2005 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI181463 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI181457 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI181456 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI124311 A/Indonesia/341H/2006 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI124107 A/Indonesia/175H/2005 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI41195 A/Indonesia/CDC194P/2005 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI41192 A/Indonesia/CDC390/2006 (A/H5N1) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%)
EPI181472 A/chicken/South Kalimantan/UT6028/2006 (A/H5N1) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%)
EPI181471 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%)
EPI181469 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%)
EPI181468 A/chicken/East Java/UT6045/2007 (A/H5N1) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%)
EPI41086 A/Indonesia/CDC7/2005 (A/H5N1) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%)
EPI181464 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 7 (MP) 1768.4 0.000000e+00 965/969 (99%)
EPI41162 A/Indonesia/CDC184/2005 (A/H5N1) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%)
EPI226719 A/Indonesia/160H/2005 (A/H5N1) segment 7 (MP) 1762.8 0.000000e+00 964/969 (99%)
EPI26407 A/Chicken/Henan/16/2004 (A/H5N1) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%)
EPI26395 A/chicken/Henan/01/2004 (A/H5N1) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%)
EPI229454 A/quail/Yogjakarta/UT1075/2004 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI229449 A/quail/Yogjakarta/UT1023/2004 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI181467 A/chicken/East Java/UT6044/2007 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI181465 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI41639 A/Indonesia/CDC623E/2006 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI41620 A/Indonesia/CDC623/2006 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI41122 A/chicken/Indonesia/CDC24/2005 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI41105 A/chicken/Indonesia/CDC25/2005 (A/H5N1) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%)
EPI235112 A/chicken/Legok/2003 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI235030 A/chicken/Indonesia/9/2003 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI235022 A/chicken/Indonesia/8/2003 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI115473 A/chicken/Indonesia/7/2003 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI25307 A/chicken/Hubei/489/2004 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI24695 A/chicken/Hubei/327/2004 (A/H5N1) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%)
EPI356577 A/chicken/Jakarta/DKI31/2005 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI356526 A/chicken/East Java/BL-IPA/2003 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI234706 A/Ck/Indonesia/BL/2003 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI228793 A/quail/Yogjakarta/BBVet-IX/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI226921 A/Chicken/Bantul/BBVet-I/2005 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI181452 A/chicken/East Kalimantan/UT1035/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI103585 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI103582 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI103576 A/chicken/Mangarai-NTT/BPPV6/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI103570 A/chicken/Bangli Bali/BBPV6-1/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI103567 A/chicken/Bangli Bali/BPPV6-2/2004 (A/H5N1) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%)
EPI115385 A/chicken/Hong Kong/YU357/2003 (A/H5N1) segment 7 (MP) 1753.6 0.000000e+00 969/979 (98%)
EPI235136 A/duck/Hubei/wq/2003 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI235135 A/duck/Hubei/wp/2003 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI228869 A/swine/Henan/wy/2004 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI26404 A/Chicken/Henan/13/2004 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI26401 A/Chicken/Henan/12/2004 (A/H5N1) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%)
EPI356546 A/chicken/West Java/1074/2003 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI271739 A/swine/East Java/UT6010/2007 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI271723 A/swine/East Java/UT6005/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI271715 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI271699 A/swine/Banten/UT6001/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI234714 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI228779 A/Chicken/Yogjakarta/BBVet-IX/2004 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI228424 () segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI181455 A/duck/East Java/UT1107/2004 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI181453 A/duck/East Java/UT1046/2004 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI181449 A/chicken/West Java/UT1001/2003 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI135944 A/duck/Hunan/782/2003 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI135868 A/duck/Hunan/795/2002 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI135849 A/chicken/Hunan/23/2002 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI124496 A/Indonesia/569H/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI41677 A/Indonesia/CDC624E/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI41658 A/Indonesia/CDC624/2006 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI22858 A/Ck/Indonesia/5/2004 (A/H5N1) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%)
EPI235899 A/duck/Shanghai/xj/2002 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 970/982 (98%)
EPI235010 A/chicken/Indonesia/11/2003 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%)
EPI227440 A/raccoon dog/Shandong/sd2/2005 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%)
EPI115484 A/chicken/Indonesia/11/2003 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%)
EPI101897 A/chicken/Guangxi/12/2004 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%)
EPI20144 A/duck/China/E319-2/03 (A/H5N1) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%)
EPI135678 A/pheasant/Shantou/40/2003 (A/H5N1) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%)
EPI22942 A/Ck/HK/YU324/2003 (A/H5N1) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%)
EPI235945 A/goose/Hong Kong/739.2/2002 (A/H5N1) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI235910 A/egret/Hong Kong/757.2/2002 (A/H5N1) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI235175 A/goose/Jilin/hb/2003 (A/H5N1) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI227530 A/spotbill duck/Xuyi/23/2005 (A/H0) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI227432 A/raccoon dog/Shandong/sd1/2005 (A/H5N1) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI227288 A/mallard/Gaoyou/31/2005 (A/H0) segment 7 (MP) 1740.7 0.000000e+00 968/981 (98%)
EPI123805 A/Chicken/Laos/Xaythiani 32/2006 (A/H5N1) segment 7 (MP) 1740.7 0.000000e+00 969/982 (98%)

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niman
PostPosted: Mon Jun 25, 2012 7:36 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
Top 100 NS matches at GISAID

EPI376589 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 8 (NS) 1520.9 0.000000e+00 823/823 (100%)
EPI376575 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 8 (NS) 1520.9 0.000000e+00 823/823 (100%)
EPI376561 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 8 (NS) 1520.9 0.000000e+00 823/823 (100%)
EPI376549 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 8 (NS) 1520.9 0.000000e+00 823/823 (100%)
EPI376541 A/Indonesia/5/2005 (A/H5N1) segment 8 (NS) 1520.9 0.000000e+00 823/823 (100%)
EPI376582 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 8 (NS) 1515.4 0.000000e+00 822/823 (99%)
EPI376568 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 8 (NS) 1515.4 0.000000e+00 822/823 (99%)
EPI41072 A/Indonesia/5/2005 (A/H5N1) segment 8 (NS) 1515.4 0.000000e+00 822/823 (99%)
EPI181494 A/chicken/East Java/UT6020/2006 (A/H5N1) segment 8 (NS) 1504.3 0.000000e+00 820/823 (99%)
EPI181483 A/chicken/Sulawesi Selatan/UT2094/2005 (A/H5N1) segment 8 (NS) 1504.3 0.000000e+00 820/823 (99%)
EPI181482 A/chicken/Sulawesi Selatan/UT2093/2005 (A/H5N1) segment 8 (NS) 1504.3 0.000000e+00 820/823 (99%)
EPI356506 A/chicken/West Java/Smi-Hay/2005 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI181487 A/chicken/East Java/UT6021/2006 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI181481 A/chicken/Bali/UT2092/2005 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI181480 A/chicken/Bali/UT2091/2005 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI124243 A/Indonesia/298H/2006 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI41089 A/Indonesia/CDC7/2005 (A/H5N1) segment 8 (NS) 1498.8 0.000000e+00 819/823 (99%)
EPI234717 A/Ck/Indonesia/PA/2003 (A/H5N1) segment 8 (NS) 1493.2 0.000000e+00 818/823 (99%)
EPI124318 A/Indonesia/341H/2006 (A/H5N1) segment 8 (NS) 1493.2 0.000000e+00 818/823 (99%)
EPI41281 A/Indonesia/CDC390/2006 (A/H5N1) segment 8 (NS) 1493.2 0.000000e+00 818/823 (99%)
EPI235115 A/chicken/Legok/2003 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI226722 A/Indonesia/160H/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI181495 A/chicken/East Java/UT6023/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI181493 A/chicken/East Java/UT6017/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI181489 A/chicken/South Kalimantan/UT6029/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI181488 A/chicken/Banten/UT6025/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI124522 A/Indonesia/583H/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI124299 A/Indonesia/321H/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI124189 A/Indonesia/245H/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI124114 A/Indonesia/175H/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI49211 A/Indonesia/CDC835/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41957 A/Indonesia/CDC759/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41924 A/Indonesia/CDC739/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41836 A/Indonesia/CDC669P/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41817 A/Indonesia/CDC669/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41608 A/Indonesia/CDC610/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41296 A/Indonesia/CDC194P/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41287 A/Indonesia/CDC292T/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41284 A/Indonesia/CDC329/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41278 A/Indonesia/CDC370E/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41275 A/Indonesia/CDC370/2006 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41260 A/Indonesia/CDC292N/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI41257 A/Indonesia/CDC184/2005 (A/H5N1) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%)
EPI227096 A/Chicken/Wajo/BBVM/2005 (A/H5N1) segment 8 (NS) 1485.8 0.000000e+00 815/820 (99%)
EPI356538 A/Muscovy duck/West Java/Bgr-Cw/2005 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI234709 A/Ck/Indonesia/BL/2003 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI181491 A/chicken/East Java/UT6044/2007 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI124261 A/Indonesia/304H/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI124170 A/Indonesia/239H/2005 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI49249 A/Indonesia/CDC836T/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI49230 A/Indonesia/CDC836/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI49192 A/Indonesia/CDC940/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41943 A/Indonesia/CDC742/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41293 A/Indonesia/CDC287E/2005 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41290 A/Indonesia/CDC326/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41272 A/feline/Indonesia/CDC1/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41266 A/Indonesia/CDC326N/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41263 A/Indonesia/CDC326T/2006 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41125 A/chicken/Indonesia/CDC24/2005 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI41108 A/chicken/Indonesia/CDC25/2005 (A/H5N1) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%)
EPI356576 A/duck/Jakarta/Slmt306/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 816/824 (99%)
EPI235033 A/chicken/Indonesia/9/2003 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI235025 A/chicken/Indonesia/8/2003 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI235017 A/chicken/Indonesia/7/2003 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI221750 A/chicken/Indonesia/3/2007 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI124484 A/Indonesia/567H/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41887 A/Indonesia/CDC644/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41868 A/Indonesia/CDC644T/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41760 A/Indonesia/CDC634T/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41741 A/Indonesia/CDC634P/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41722 A/Indonesia/CDC634/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41646 A/Indonesia/CDC623E/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41627 A/Indonesia/CDC623/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI41269 A/Indonesia/CDC357/2006 (A/H5N1) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%)
EPI227158 A/duck/Parepare/BBVM/2005 (A/H5N1) segment 8 (NS) 1474.7 0.000000e+00 806/810 (99%)
EPI356575 A/muscovy duck/Jakarta/Sum106/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%)
EPI356522 A/chicken/Jakarta/DKI-Nurs/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI271726 A/swine/East Java/UT6005/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI271718 A/swine/North Sumatra/UT6004/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI271702 A/swine/Banten/UT6001/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI235013 A/chicken/Indonesia/11/2003 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI181496 A/chicken/South Kalimantan/UT6028/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI181492 A/chicken/East Java/UT6045/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI181476 A/chicken/East Kalimantan/UT1035/2004 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI181474 A/chicken/East Java/UT1006/2003 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI124503 A/Indonesia/569H/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI124280 A/Indonesia/292H/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 813/821 (99%)
EPI55652 A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI55633 A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI55614 A/Indonesia/CDC1031T/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI55595 A/Indonesia/CDC1031/2007 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41684 A/Indonesia/CDC624E/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41665 A/Indonesia/CDC624/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41580 A/Indonesia/CDC582/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41561 A/Indonesia/CDC523T/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41542 A/Indonesia/CDC523E/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI41408 A/Indonesia/CDC523/2006 (A/H5N1) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%)
EPI226998 A/chicken/Magetan/BBVW/2005 (A/H5N1) segment 8 (NS) 1469.2 0.000000e+00 805/810 (99%)
EPI356536 A/chicken/West Java/1074/2003 (A/H5N1) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%)
EPI271742 A/swine/East Java/UT6010/2007 (A/H5N1) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%)

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niman
PostPosted: Mon Jun 25, 2012 8:02 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27351
Location: Pittsburgh, PA USA
C355T (H107Y) matches (downstream)

EPI376585 A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI376578 A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI376571 A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI376564 A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI376557 A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI376545 A/ferret/Indonesia/5-F1/2005 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI243076 A/chicken/Scotland/59 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)
EPI242232 A/Chicken/Scotland/59 (A/H5N1) segment 4 (HA) 27.0 8.353100e+00 14/14 (100%)

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