Rhiza Labs FluTracker Forum

The Air Force has released as series of 2012 HA sequences (1200 BP at Genbank). Included was a California isolate, A/California/2967/2012, which is identical to Mexico and Texas isolates, including those with confirmed NA H274Y. The Air Force sequences are for DoD enlistees or dependants, and although NA sequences are not released, the HA sequences that are identical or closely related to Texas and Mexico isolates with NA H274Y are likely candidates for Tamiflu resistance via H274Y.

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www.twitter.com/hniman

LOCUS CY120852 1200 bp cRNA linear VRL 18-JUN-2012
DEFINITION Influenza A virus (A/California/2967/2012(H1N1)) hemagglutinin (HA)
gene, partial cds.
ACCESSION CY120852
VERSION CY120852.1 GI:391882870
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/California/2967/2012(H1N1))
ORGANISM Influenza A virus (A/California/2967/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Connors,B.C., Jones,S.L., Adams,J.E., Bisaha,S.A., Canas,L.C.,
Cormier,T.L., Cosme,K.W., Davis,M.G., Leaver,M.M., Okoro,B.N.,
Yohannes,R.A., Abshire,J.P., LLoyd,L.V., Tastad,K.J., Smith,J.P.,
Macintosh,V.H., Fumia,K.F., Macias,E.A., Noe,J.C. and Sjoberg,P.A.
TITLE 2011-2012 Influenza Surveillance among DoD Populations
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1200)
AUTHORS Connors,B.C., Jones,S.L., Adams,J.E., Bisaha,S.A., Canas,L.C.,
Cormier,T.L., Cosme,K.W., Davis,M.G., Leaver,M.M., Okoro,B.N.,
Yohannes,R.A., Abshire,J.P., LLoyd,L.V., Tastad,K.J., Smith,J.P.,
Macintosh,V.H., Fumia,K.F., Macias,E.A., Noe,J.C. and Sjoberg,P.A.
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2012) USAFSAM/PHE, United States Air Force, 2510
5th Street, WPAFB, OH 45433, USA
FEATURES Location/Qualifiers
source 1..1200
/organism="Influenza A virus
(A/California/2967/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/California/2967/2012"
/serotype="H1N1"
/isolation_source="Nasal Wash"
/host="human; gender F; age 62"
/db_xref="taxon:1199349"
/segment="4"
/lab_host="PMK1 passage(s)"
/country="USA: CA"
/collection_date="05-Apr-2012"
gene 1..>1200
/gene="HA"
CDS 1..>1200
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="AFM45456.1"
/db_xref="GI:391882871"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECETLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKG
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTTADQQSLYQNADTYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
DAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKI
TNKVNSVI"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..>1200
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt accatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taatcttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaaacact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaggc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actactgctg accaacaaag tctctatcag aatgcagata catatgtttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaga tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcaa aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggcttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac aagattacta acaaagtaaa ttctgttatt

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www.twitter.com/hniman

Top 100 matches at Genbank

CY120852.1 Influenza A virus (A/California/2967/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2379 2379 100% 0.0 100%
JQ714073.1 Influenza A virus (A/Mexico City/INER1078/2012(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2379 2379 100% 0.0 100%
CY120843.1 Influenza A virus (A/Washington2958/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2371 2371 100% 0.0 99%
CY120052.1 Influenza A virus (A/Mexico/InDRE3354/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2371 2371 100% 0.0 99%
CY112202.1 Influenza A virus (A/California/AF2874/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2371 2371 100% 0.0 99%
CY112203.1 Influenza A virus (A/Oklahoma/AF2875/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112207.1| Influenza A virus (A/Nevada/AF2879/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112208.1| Influenza A virus (A/Colorado/AF2880/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112209.1| Influenza A virus (A/Colorado/AF2881/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112214.1| Influenza A virus (A/North Carolina/AF2886/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112217.1| Influenza A virus (A/Texas/AF2889/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY112218.1| Influenza A virus (A/Texas/AF2890/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120817.1| Influenza A virus (A/Texas/2932/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120819.1| Influenza A virus (A/Texas/2934/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120825.1| Influenza A virus (A/Texas/2940/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120826.1| Influenza A virus (A/Texas/2941/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120831.1| Influenza A virus (A/Oklahoma/2946/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120832.1| Influenza A virus (A/Oklahoma/2947/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120837.1| Influenza A virus (A/Texas/2952/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120839.1| Influenza A virus (A/Oklahoma/2954/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120840.1| Influenza A virus (A/Nevada/2955/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120841.1| Influenza A virus (A/Texas/2956/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120842.1| Influenza A virus (A/Nevada/2957/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120844.1| Influenza A virus (A/Georgia/2959/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2371 2371 100% 0.0 99%
JQ714075.1 Influenza A virus (A/Mexico City/INER1149/2012(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2371 2371 100% 0.0 99%
JQ714072.1 Influenza A virus (A/Mexico City/INER0958/2012(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2371 2371 100% 0.0 99%
CY116642.1 Influenza A virus (A/Mexico/InDRE3740/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2367 2367 100% 0.0 99%
CY120848.1 Influenza A virus (A/Arizona/2963/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120838.1 Influenza A virus (A/Texas/2953/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120835.1 Influenza A virus (A/Oklahoma/2950/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120829.1 Influenza A virus (A/Texas/2944/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120823.1 Influenza A virus (A/New Jersey/2938/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120818.1 Influenza A virus (A/Texas/2933/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY120056.1 Influenza A virus (A/Mexico/InDRE5726/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2363 2363 100% 0.0 99%
CY112206.1 Influenza A virus (A/Florida/AF2878/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY112215.1 Influenza A virus (A/Oklahoma/AF2887/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120815.1 Influenza A virus (A/Florida/2930/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY112211.1 Influenza A virus (A/Illinois/AF2883/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY112205.1 Influenza A virus (A/Florida/AF2877/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY112216.1 Influenza A virus (A/Oklahoma/AF2888/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120813.1 Influenza A virus (A/Oklahoma/2928/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
CY112210.1 Influenza A virus (A/Florida/AF2882/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2363 2363 100% 0.0 99%
JQ714074.1 Influenza A virus (A/Mexico City/INER1106/2012(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2363 2363 100% 0.0 99%
CY110745.1 Influenza A virus (A/Mexico/InDRE689/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2363 2363 100% 0.0 99%
CY110743.1 Influenza A virus (A/Mexico/InDRE1474/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2363 2363 100% 0.0 99%
CY120851.1 Influenza A virus (A/Alabama/2966/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2355 2355 100% 0.0 99%
CY120850.1 Influenza A virus (A/Colorado/2965/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2355 2355 100% 0.0 99%
CY120849.1 Influenza A virus (A/Georgia/2964/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2355 2355 100% 0.0 99%
CY120824.1 Influenza A virus (A/Florida/2939/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2355 2355 100% 0.0 99%
CY120814.1 Influenza A virus (A/Oklahoma/2929/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2355 2355 100% 0.0 99%
CY120058.1 Influenza A virus (A/Mexico/InDRE6023/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2355 2355 100% 0.0 99%
CY120054.1 Influenza A virus (A/Mexico/InDRE5498/2012(H1N1)) hemagglutinin (HA) gene, complete cds 2355 2355 100% 0.0 99%
CY089455.1 Influenza A virus (A/Thailand/CU-H2698/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2355 2355 100% 0.0 99%
CY120833.1 Influenza A virus (A/Oklahoma/2948/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY120816.1 Influenza A virus (A/Washington/2931/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY112204.1 Influenza A virus (A/Washington/AF2876/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY097892.1 Influenza A virus (A/Moscow/WRAIR1929P/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY096513.1 Influenza A virus (A/Bangkok/INS514/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY096306.1 Influenza A virus (A/Bangkok/INS479/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY096290.1 Influenza A virus (A/Bangkok/INS477/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY089437.1 Influenza A virus (A/Thailand/CU-B4339/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500448.1 Influenza A virus (A/Karaj/6072/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500446.1 Influenza A virus (A/Karaj/5987/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500444.1 Influenza A virus (A/Karaj/5985/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500442.1 Influenza A virus (A/Tehran/5963/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500440.1 Influenza A virus (A/Tehran/5958/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500432.1 Influenza A virus (A/Karaj/5607/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
JF500430.1 Influenza A virus (A/Ghom/215/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY084218.1 Influenza A virus (A/North Carolina/AF21795/2011(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY084208.1 Influenza A virus (A/Japane/AF21777/2011(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY084202.1 Influenza A virus (A/North Carolina/AF21794/2010(H1N1)) hemagglutinin (HA) gene, partial cds 2347 2347 100% 0.0 99%
CY081591.1 Influenza A virus (A/Beijing/3907/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY080420.1 Influenza A virus (A/Ulaanbaatar/190/2011(H1N1)) segment 4 sequence 2347 2347 100% 0.0 99%
HQ712173.1 Influenza A virus (A/Karaj/5327/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2347 2347 100% 0.0 99%
CY120847.1 Influenza A virus (A/Washington/2962/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2339 2339 100% 0.0 99%
CY120845.1 Influenza A virus (A/Colorado/2960/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2339 2339 100% 0.0 99%
CY112219.1 Influenza A virus (A/Texas/AF2891/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2339 2339 100% 0.0 99%
CY112220.1 Influenza A virus (A/Texas/AF2892/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120820.1 Influenza A virus (A/Texas/2935/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120821.1 Influenza A virus (A/Texas/2936/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120822.1 Influenza A virus (A/Texas/2937/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120827.1 Influenza A virus (A/Texas/2942/2012(H1N1)) hemagglutinin (HA) gene, partial cds
CY120828.1 Influenza A virus (A/Texas/2943/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2339 2339 100% 0.0 99%
CY103851.1 Influenza A virus (A/Novosibirsk/107k/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY103849.1 Influenza A virus (A/Novosibirsk/104k/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
JN613302.1 Influenza A virus (A/Ankara/02/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY098162.1 Influenza A virus (A/Bangkok/INS509/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY098012.1 Influenza A virus (A/Moscow/WRAIR4305N/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY096450.1 Influenza A virus (A/Bangkok/INS504/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY096370.1 Influenza A virus (A/Bangkok/INS492/2010(H1N1)) hemagglutinin (HA) gene, complete cds
CY096561.1| Influenza A virus (A/Khon Kaen/INS523/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY081156.2 Influenza A virus (A/Thailand/CU-C1157/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
JF500450.1 Influenza A virus (A/Karaj/6076/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
JF500438.1 Influenza A virus (A/Karaj/5924/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
JF500436.1 Influenza A virus (A/Karaj/5921/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY084210.1 Influenza A virus (A/Korea/AF21785/2011(H1N1)) hemagglutinin (HA) gene, partial cds 2339 2339 100% 0.0 99%
HQ853306.1 Influenza A virus (A/Karaj/5718/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
HQ853305.1 Influenza A virus (A/Karaj/5685/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
HQ853302.1 Influenza A virus (A/Tehran/5675/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds >gb|CY088816.1| Influenza A virus (A/Thailand/CU-H2358/2010(H1N1)) hemagglutinin (HA) gene, complete cds >gb|CY088838.1| Influenza A virus (A/Thailand/CU-H2543/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2339 2339 100% 0.0 99%
CY103843.1 Influenza A virus (A/Novosibirsk/105d/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2335 2335 100% 0.0 99%
CY081586.1 Influenza A virus (A/Beijing/3884/2010(H1N1)) hemagglutinin (HA) gene, partial cds 2335 2335 99% 0.0 99%
CY120846.1 Influenza A virus (A/Washington/2961/2012(H1N1)) hemagglutinin (HA) gene, partial cds 2331 2331 100% 0.0 99%
CY081077.2 Influenza A virus (A/Ontario/720545/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ809751.1 Influenza A virus (A/swine/South Dakota/A01201469/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY110865.1 Influenza A virus (A/Jeonnam/362/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY111262.1 Influenza A virus (A/Boston/DOA22/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624644.1 Influenza A virus (A/Sydney/OG1/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624643.1 Influenza A virus (A/Sydney/RB1/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624642.1 Influenza A virus (A/Sydney/IM1/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624641.1 Influenza A virus (A/Sydney/HC1/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624639.1 Influenza A virus (A/Sydney/CB2/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624638.1 Influenza A virus (A/Sydney/CB1/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JQ624636.1 Influenza A virus (A/Sydney/JP12Y/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY103853.1 Influenza A virus (A/Tomsk/18/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY103847.1 Influenza A virus (A/Novosibirsk/53k/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY103845.1 Influenza A virus (A/Novosibirsk/24k/2011(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN187151.1 Influenza A virus (A/Taiwan/2883/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN714500.1 Influenza A virus (A/Joshkar-Ola/CRIE-BLP/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN601101.1 Influenza A virus (A/Finland/32/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN601098.1 Influenza A virus (A/Finland/29/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN601089.1 Influenza A virus (A/Finland/20/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN601086.1 Influenza A virus (A/Finland/17/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
JN566140.1 Influenza A virus (A/Philippines/TMC11-9/2011(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY096521.1 Influenza A virus (A/Bangkok/INS517/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY096410.1 Influenza A virus (A/Bangkok/INS498/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%
CY096346.1 Influenza A virus (A/Bangkok/INS485/2010(H1N1)) hemagglutinin (HA) gene, complete cds
CY096482.1| Influenza A virus (A/Bangkok/INS510/2010(H1N1)) hemagglutinin (HA) gene, complete cds
CY098106.1| Influenza A virus (A/Bangkok/INS484/2010(H1N1)) hemagglutinin (HA) gene, complete cds
CY098130.1| Influenza A virus (A/Bangkok/INS488/2010(H1N1)) hemagglutinin (HA) gene, complete cds
CY098146.1| Influenza A virus (A/Bangkok/INS502/2010(H1N1)) hemagglutinin (HA) gene, complete cds 2331 2331 100% 0.0 99%

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Top 100 matches at GISAID

EPI368668 A/Florida/06/2012 (A/H1N1 pdm09) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI368655 A/Texas/30/2012 (A/H1N1 pdm09) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI361755 A/Mexico City/INER1078/2012 (A/H1N1) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI375517 A/Texas/37/2012 (A/H1N1 pdm09) segment 4 (HA) 2213.4 0.000000e+00 1199/1200 (99%)
EPI375568 A/Iowa/09/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI372990 A/Texas/49/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI372534 A/Alabama/06/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI370419 A/Texas/35/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI368459 A/Georgia/06/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI366329 A/Texas/07/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365467 A/Texas/AF2890/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365465 A/North Carolina/AF2886/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365462 A/Colorado/AF2880/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365459 A/California/AF2874/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365364 A/Texas/AF2889/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365360 A/Colorado/AF2881/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365359 A/Nevada/AF2879/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI365357 A/Oklahoma/AF2875/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI362991 A/Guatemala/18/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI362988 A/Washington/15/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI362979 A/Texas/22/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI362952 A/Texas/21/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI361757 A/Mexico City/INER1149/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI361754 A/Mexico City/INER0958/2012 (A/H1N1) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI358148 A/Tennessee/02/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI358135 A/North Carolina/06/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI357930 A/Georgia/03/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI356265 A/California/12/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI356259 A/Missouri/03/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI355209 A/Colorado/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353910 A/Mexico/254/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353907 A/Mexico/3723/2011 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353399 A/Maine/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353385 A/Alabama/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI352602 A/Texas/02/2012 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI349358 A/Pennsylvania/16/2011 (A/H1N1 pdm09) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI372993 A/Maryland/12/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI372552 A/Massachusetts/05/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI370407 A/Texas/27/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI370389 A/Texas/33/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI369854 A/Mexico/InDRE3740/2011 (A/H1N1) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI368664 A/Washington/19/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI366299 A/Mexico/689/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI366296 A/Mexico/2440/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI362994 A/North Dakota/02/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI359690 A/Mexico/254/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI357959 A/Maryland/03/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI357956 A/New Mexico/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI357953 A/Wisconsin/02/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI353426 A/Texas/05/2012 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI353405 A/Mexico/3720/2011 (A/H1N1 pdm09) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI375578 A/North Carolina/16/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI375540 A/Wyoming/09/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI375529 A/Washington/22/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370433 A/Virginia/07/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370425 A/Colorado/12/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370416 A/Texas/24/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370413 A/Illinois/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370410 A/Illinois/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI370395 A/Texas/31/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI368689 A/Tennessee/05/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI368656 A/South Carolina/08/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI368651 A/Texas/29/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI368643 A/Texas/26/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI368439 A/Kansas/07/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI366337 A/Texas/24/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI366334 A/Texas/23/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI366332 A/Texas/23/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI366293 A/Mexico/239/2011 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365466 A/Oklahoma/AF2888/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365463 A/Florida/AF2882/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365461 A/Florida/AF2878/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365363 A/Oklahoma/AF2887/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365361 A/Illinois/AF2883/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI365358 A/Florida/AF2877/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI361756 A/Mexico City/INER1106/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI358144 A/Missouri/04/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI357965 A/Utah/08/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI357933 A/Wisconsin/06/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI357490 A/Paris/196/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI356271 A/North Carolina/04/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI355257 A/Mexico/InDRE689/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI355255 A/Mexico/InDRE1474/2012 (A/H1N1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI354708 A/Norway/345/2012 (A/H1) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353423 A/Texas/04/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353411 A/Mexico/56/2011 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353408 A/Mexico/52/2011 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353402 A/Mexico/210/2012 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353388 A/California/52/2011 (A/H1N1 pdm09) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI372547 A/Georgia/09/2012 (A/H1N1 pdm09) segment 4 (HA) 2204.2 0.000000e+00 1197/1200 (99%)
EPI372539 A/New Hampshire/07/2012 (A/H1N1 pdm09) segment 4 (HA) 2204.2 0.000000e+00 1197/1200 (99%)
EPI362967 A/North Dakota/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2204.2 0.000000e+00 1197/1200 (99%)
EPI375554 A/Illinois/07/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI375532 A/New Mexico/08/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI375520 A/New York/13/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI372987 A/Texas/48/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI368662 A/Georgia/08/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI366287 A/Mexico/1474/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI362985 A/Michigan/01/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)
EPI362961 A/Kansas/04/2012 (A/H1N1 pdm09) segment 4 (HA) 2202.3 0.000000e+00 1197/1200 (99%)

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