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PostPosted: Wed May 23, 2012 6:51 am 
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Location: Pittsburgh, PA USA
Biologia Molecular y Validacion de Tecnicas in Santo Tomas, Mexico has released a series of 2012 H1N1pdm09 HA and NA sequences at Genbank. Earlier sequences from January collections in Mexico City had H274Y and matched sequences in Texas. The latest sequences are more recent and cover a larger geographic area and alos have H274Y, extending the spread on H274Y in North America.

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PostPosted: Wed May 23, 2012 6:55 am 
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Location: Pittsburgh, PA USA
LOCUS CY120057 1422 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE5726/2012(H1N1)) neuraminidase
(NA) gene, complete cds.
ACCESSION CY120057
VERSION CY120057.1 GI:388260779
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE5726/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE5726/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1422)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1422)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..1422
/organism="Influenza A virus
(A/Mexico/InDRE5726/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE5726/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender M; age 11"
/db_xref="taxon:1193290"
/segment="6"
/country="Mexico: Veracruz City"
/collection_date="17-Feb-2012"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFK25604.1"
/db_xref="GI:388260780"
/translation="MNPNQKIITIGSVCMTIGMANLILQIGNIISIWISHSIQLRNQS
QIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSK
DNSIRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMS
CPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKS
WRNNILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYY
EECSCYPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGS
CGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNNFSIKQD
IVGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNS
DTVGWSWPDGAELPFTIDK"
ORIGIN
1 atgaatccaa accaaaagat aataaccatt ggttcggtct gtatgacaat tggaatggct
61 aacttaatat tacaaattgg aaacataatc tcaatatgga ttagccactc aattcaactt
121 aggaatcaaa gtcagattga aacatgcaat caaagcgtca ttacttatga aaacaacact
181 tgggtaaatc agacatatgt taacatcagc aacaccaact ttgctgctgg acagtcagtg
241 gtttccgtga aattagcggg caattcctct ctctgccctg ttagtggatg ggctatatac
301 agtaaagaca acagtataag aatcggttcc aagggggatg tgtttgtcat aagggaacca
361 ttcatatcat gctccccctt ggaatgcaga accttcttct tgacccaagg ggccttgcta
421 aatgacaaac attccaatgg aaccattaaa gacaggagcc catatcgaac cctaatgagc
481 tgtcctattg gtgaagttcc ctctccatac aactcaagat ttgagtcagt cgcttggtca
541 gcaagtgctt gtcatgatgg catcaattgg ctaacaattg gaatttctgg cccagacaat
601 ggggcagtgg ctgtgttaaa gtacaacggc ataataacag acactatcaa gagttggaga
661 aataatatat tgagaacaca agaatctgaa tgtgcatgtg taaatggttc ttgctttacc
721 ataatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag
781 ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt attactatga ggaatgctcc
841 tgttatcctg attctagtga aatcacatgt gtgtgcaggg ataactggca tggctcgaat
901 cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga taggatacat atgcagtggg
961 attttcggag acaatccacg ccctaatgat aagacaggca gttgtggtcc agtatcgtct
1021 aatggagcaa atggagtaaa aggattttca ttcaaatacg gcaatggtgt ttggataggg
1081 agaactaaaa gcattagttc aagaaaaggt tttgagatga tttgggatcc aaacggatgg
1141 actgggacag acaataactt ctcaataaag caagatatcg taggaataaa tgagtggtca
1201 ggatacagcg ggagttttgt tcagcatcca gaactaacag ggctggattg tataagacct
1261 tgcttctggg ttgaactaat cagaggacga cccaaagaga acacaatctg gactagcggg
1321 agcagcatat ccttttgtgg tgtaaacagt gacactgtgg gttggtcttg gccagacggt
1381 gctgagttgc catttaccat tgacaagtaa tttgttcaaa aa

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PostPosted: Wed May 23, 2012 7:00 am 
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Location: Pittsburgh, PA USA
NA exact matches for Feb 17, 2012 isolate from Veracruz City, A/Mexico/InDRE5726/2012

EPI370415 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI370412 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI370409 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI368650 A/Texas/29/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366336 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366333 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366331 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366295 A/Mexico/2440/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366289 A/Mexico/1818/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)

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PostPosted: Wed May 23, 2012 7:09 am 
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Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120053 1387 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE3354/2012(H1N1)) neuraminidase
(NA) gene, partial cds.
ACCESSION CY120053
VERSION CY120053.1 GI:388260771
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE3354/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE3354/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1387)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1387)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..1387
/organism="Influenza A virus
(A/Mexico/InDRE3354/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE3354/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender F; age 61"
/db_xref="taxon:1193288"
/segment="6"
/country="Mexico: Tlaxcala City"
/collection_date="08-Feb-2012"
gene <1..1375
/gene="NA"
CDS <1..1375
/gene="NA"
/codon_start=2
/product="neuraminidase"
/protein_id="AFK25600.1"
/db_xref="GI:388260772"
/translation="VCMTIGMANLILQIGNIISIWISHSIQLRNQSQIETCNQSVITY
ENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVIGWAIYSKDNSIRIGSKGDV
FVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPIGEVPSPYNS
RFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESE
CACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYYEECSCYPDSSEI
TCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCGPVSSNGANGV
KGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNNFSIKQDIVGINEWSGYSG
SFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNSDTVGWSWPDGAE
LPFTIDK"
ORIGIN
1 ggtctgtatg acaattggaa tggctaactt aatattacaa attggaaaca taatctcaat
61 atggattagc cactcaattc aacttaggaa tcaaagtcag attgaaacat gcaatcaaag
121 cgtcattact tatgaaaaca acacttgggt aaatcagaca tatgttaaca tcagcaacac
181 caactttgct gctggacagt cagtggtttc cgtgaaatta gcgggcaatt cctctctctg
241 ccctgttatt ggatgggcta tatacagtaa agacaacagt ataagaatcg gttccaaggg
301 ggatgtgttt gtcataaggg aaccattcat atcatgctcc cccttggaat gcagaacctt
361 cttcttgacc caaggggcct tgctaaatga caaacattcc aatggaacca ttaaagacag
421 gagcccatat cgaaccctaa tgagctgtcc tattggtgaa gttccctctc catacaactc
481 aagatttgag tcagtcgctt ggtcagcaag tgcttgtcat gatggcatca attggctaac
541 aattggaatt tctggcccag acaatggggc agtggctgtg ttaaagtaca acggcataat
601 aacagacact atcaagagtt ggagaaataa tatattgaga acacaagaat ctgaatgtgc
661 atgtgtaaat ggttcttgct ttaccataat gaccgatgga ccaagtgatg gacaggcctc
721 atacaagatc ttcagaatag aaaagggaaa gatagtcaaa tcagtcgaaa tgaatgcccc
781 taattattac tatgaggaat gctcctgtta tcctgattct agtgaaatca catgtgtgtg
841 cagggataac tggcatggct cgaatcgacc gtgggtgtct ttcaaccaga atctggaata
901 tcagatagga tacatatgca gtgggatttt cggagacaat ccacgcccta atgataagac
961 aggcagttgt ggtccagtat cgtctaatgg agcaaatgga gtaaaaggat tttcattcaa
1021 atacggcaat ggtgtttgga tagggagaac taaaagcatt agttcaagaa aaggttttga
1081 gatgatttgg gatccaaacg gatggactgg gacagacaat aacttctcaa taaagcaaga
1141 tatcgtagga ataaatgagt ggtcaggata cagcgggagt tttgttcagc atccagaact
1201 aacagggctg gattgtataa gaccttgctt ctgggttgaa ctaatcagag gacgacccaa
1261 agagaacaca atctggacta gcgggagcag catatccttt tgtggtgtaa acagtgacac
1321 tgtgggttgg tcttggccag acggtgctga gttgccattt accattgaca agtaatttgt
1381 tcaaaaa

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PostPosted: Wed May 23, 2012 7:18 am 
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Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120055 816 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE5498/2012(H1N1)) neuraminidase
(NA) gene, partial cds.
ACCESSION CY120055
VERSION CY120055.1 GI:388260775
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE5498/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE5498/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 816)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 816)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..816
/organism="Influenza A virus
(A/Mexico/InDRE5498/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE5498/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender F; age 34"
/db_xref="taxon:1193289"
/segment="6"
/country="Mexico: Hidalgo City"
/collection_date="22-Feb-2012"
gene <1..>816
/gene="NA"
CDS <1..>816
/gene="NA"
/codon_start=3
/product="neuraminidase"
/protein_id="AFK25602.1"
/db_xref="GI:388260776"
/translation="VCMTIGMANLILQIGNIISIWISHSIQLRNQSQIETCNQSVITY
ENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSKDNSIRIGSKGDV
FVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPIGEVPSPYNS
RFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESE
CACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYYEECSWLG"
ORIGIN
1 cggtctgtat gacaattgga atggctaact taatattaca aattggaaac ataatctcaa
61 tatggattag ccactcaatt caacttagga atcaaagtca gattgaaaca tgcaatcaaa
121 gcgtcattac ttatgaaaac aacacttggg taaatcagac atatgttaac atcagcaaca
181 ccaactttgc tgctggacag tcagtggttt ccgtgaaatt agcgggcaat tcctctctct
241 gccctgttag tggatgggct atatacagta aagacaacag tataagaatc ggttccaagg
301 gggatgtgtt tgtcataagg gaaccattca tatcatgctc ccccttggaa tgcagaacct
361 tcttcttgac ccaaggggcc ttgctaaatg acaaacattc caatggaacc attaaagaca
421 ggagcccata tcgaacccta atgagctgtc ctattggtga agttccctct ccatacaact
481 caagatttga gtcagtcgct tggtcagcaa gtgcttgtca tgatggcatc aattggctaa
541 caattggaat ttctggccca gacaatgggg cagtggctgt gttaaagtac aacggcataa
601 taacagacac tatcaagagt tggagaaata atatattgag aacacaagaa tctgaatgtg
661 catgtgtaaa tggttcttgc tttaccataa tgaccgatgg accaagtgat ggacaggcct
721 catacaagat cttcagaata gaaaagggaa agatagtcaa atcagtcgaa atgaatgccc
781 ctaattatta ctatgaggaa tgctcctggt taggtc

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PostPosted: Wed May 23, 2012 7:25 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120059 1438 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE6023/2012(H1N1)) neuraminidase
(NA) gene, complete cds.
ACCESSION CY120059
VERSION CY120059.1 GI:388260783
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE6023/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE6023/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1438)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1438)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..1438
/organism="Influenza A virus
(A/Mexico/InDRE6023/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE6023/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender M; age 39"
/db_xref="taxon:1193291"
/segment="6"
/country="Mexico: San Luis Potosi City"
/collection_date="28-Feb-2012"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFK25606.1"
/db_xref="GI:388260784"
/translation="MNPNQKIITIGSVCMTIGMANLILQIGNIISIWISHSIQLRNQS
QIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSK
DNSIRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMS
CPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKS
WRNNILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYY
EECSCYPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGS
CGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNNFSIKQD
IVGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNS
DTVGWSWPDGAELPFTIDK"
ORIGIN
1 atgaatccaa accaaaagat aataaccatt ggttcggtct gtatgacaat tggaatggct
61 aacttaatat tacaaattgg aaacataatc tcaatatgga ttagccactc aattcaactt
121 aggaatcaaa gtcagattga aacatgcaat caaagcgtca ttacttatga aaacaacact
181 tgggtaaatc agacatatgt taacatcagc aacaccaact ttgctgctgg acagtcagtg
241 gtttccgtga aattagcggg caattcctct ctctgccctg ttagtggatg ggctatatac
301 agtaaagaca acagtataag aatcggttcc aagggggatg tgtttgtcat aagggaacca
361 ttcatatcat gctccccctt ggaatgcaga accttcttct tgacccaagg ggccttgcta
421 aatgacaaac attccaatgg aaccattaaa gacaggagcc catatcgaac cctaatgagc
481 tgtcctattg gtgaagttcc ctctccatac aactcaagat ttgagtcagt cgcttggtca
541 gcaagtgctt gtcatgatgg catcaattgg ctaacaattg gaatttctgg cccagacaat
601 ggggcagtgg ctgtgttaaa gtacaacggc ataataacag acactatcaa gagttggaga
661 aataatatat tgagaacaca agaatctgaa tgtgcatgtg taaatggttc ttgctttacc
721 ataatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag
781 ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt attactatga ggaatgctcc
841 tgttatcctg attctagtga aatcacatgt gtgtgcaggg ataactggca tggctcgaat
901 cgaccgtggg tgtctttcaa ccagaatctg gaatatcaga taggatacat atgcagtggg
961 attttcggag acaatccacg ccctaatgat aagacaggca gttgtggtcc agtatcatct
1021 aatggagcaa atggagtaaa aggattttca ttcaaatacg gcaatggtgt ttggataggg
1081 agaactaaaa gcattagttc aagaaaaggt tttgagatga tttgggatcc aaacggatgg
1141 actgggacag acaataactt ctcaataaag caagatatcg taggaataaa tgagtggtca
1201 ggatacagcg ggagttttgt tcagcatcca gaactaacag ggctggattg tataagacct
1261 tgcttctggg ttgaactaat cagaggacga cccaaagaga acacaatctg gactagcggg
1321 agcagcatat ccttttgtgg tgtaaacagt gacactgtgg gttggtcttg gccagacggt
1381 gctgagttgc catttaccat tgacaagtaa tttgttcaaa aaactccttg tttctact
//

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PostPosted: Wed May 23, 2012 7:33 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120048 461 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE1818/2012(H1N1)) neuraminidase
(NA) gene, partial cds.
ACCESSION CY120048
VERSION CY120048.1 GI:388260761
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE1818/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE1818/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 461)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 461)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..461
/organism="Influenza A virus
(A/Mexico/InDRE1818/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE1818/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender M; age 20"
/db_xref="taxon:1193285"
/segment="6"
/country="Mexico: Hidalgo City"
/collection_date="22-Jan-2012"
gene <1..>461
/gene="NA"
CDS <1..>461
/gene="NA"
/codon_start=3
/product="neuraminidase"
/protein_id="AFK25595.1"
/db_xref="GI:388260762"
/translation="SCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPIGEV
PSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNIL
RTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYY"
ORIGIN
1 tatcatgctc ccccttggaa tgcagaacct tcttcttgac ccaaggggcc ttgctaaatg
61 acaaacattc caatggaacc attaaagaca ggagcccata tcgaacccta atgagctgtc
121 ctattggtga agttccctct ccatacaact caagatttga gtcagtcgct tggtcagcaa
181 gtgcttgtca tgatggcatc aattggctaa caattggaat ttctggccca gacaatgggg
241 cagtggctgt gttaaagtac aacggcataa taacagacac tatcaagagt tggagaaata
301 atatattgag aacacaagaa tctgaatgtg catgtgtaaa tggttcttgc tttaccataa
361 tgaccgatgg accaagtgat ggacaggcct catacaagat cttcagaata gaaaagggaa
421 agatagtcaa atcagtcgaa atgaatgccc ctaattatta c

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PostPosted: Wed May 23, 2012 7:34 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120049 132 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE2440/2012(H1N1)) neuraminidase
(NA) gene, partial cds.
ACCESSION CY120049
VERSION CY120049.1 GI:388260763
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE2440/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE2440/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 132)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 132)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..132
/organism="Influenza A virus
(A/Mexico/InDRE2440/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE2440/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender F; age 14"
/db_xref="taxon:1193286"
/segment="6"
/country="Mexico: Guanajuato City"
/collection_date="26-Jan-2012"
gene <1..>132
/gene="NA"
CDS <1..>132
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFK25596.1"
/db_xref="GI:388260764"
/translation="VMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYYEECSCYPD
"
ORIGIN
1 gtaatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag
61 ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt attactatga ggaatgctcc
121 tgttatcctg at

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PostPosted: Wed May 23, 2012 7:37 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120050 114 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE2718/2012(H1N1)) neuraminidase
(NA) gene, partial cds.
ACCESSION CY120050
VERSION CY120050.1 GI:388260765
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE2718/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE2718/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 114)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 114)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..114
/organism="Influenza A virus
(A/Mexico/InDRE2718/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE2718/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender M; age 43"
/db_xref="taxon:1193287"
/segment="6"
/country="Mexico: Mexico City"
/collection_date="22-Jan-2012"
gene <1..>114
/gene="NA"
CDS <1..>114
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFK25597.1"
/db_xref="GI:388260766"
/translation="VMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYYYEE"
ORIGIN
1 gtaatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag
61 ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt attactatga ggaa

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PostPosted: Wed May 23, 2012 7:39 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS CY120051 107 bp cRNA linear VRL 22-MAY-2012
DEFINITION Influenza A virus (A/Mexico/InDRE327/2012(H1N1)) neuraminidase (NA)
gene, partial cds.
ACCESSION CY120051
VERSION CY120051.1 GI:388260767
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Mexico/InDRE327/2012(H1N1))
ORGANISM Influenza A virus (A/Mexico/InDRE327/2012(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 107)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Genetic Characterization of Pandemic Influenza H1N1 Virus in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 107)
AUTHORS Ramirez-Gonzalez,J.E., Alcantara-Perez,P.A.,
Rodriguez-Maldonado,A.P., Rodriguez-Reyes,B.D., Wong-Arambula,C.E.,
Del Mazo-Lopez,J.C., Fragoso-Fonseca,D.E., Barrera-Badillo,G.,
Lopez-Martinez,I., Cruz-Ortiz,N., Nunez-Garcia,T.,
Floriani-Verdugo,J. and Alpuche-Aranda,C.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2012) Biologia Molecular y Validacion de
Tecnicas, INDRE-SSA, Carpio 470 Col. Santo Tomas, Mexico, D.F.
11340, Mexico
FEATURES Location/Qualifiers
source 1..107
/organism="Influenza A virus
(A/Mexico/InDRE327/2012(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE327/2012"
/serotype="H1N1"
/isolation_source="Nasopharyngeal swab"
/host="human; gender F; age 35"
/db_xref="taxon:1193284"
/segment="6"
/country="Mexico: Puebla City"
/collection_date="02-Jan-2012"
gene <1..>107
/gene="NA"
CDS <1..>107
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AFK25598.1"
/db_xref="GI:388260768"
/translation="VMTDGPSDGQASYKIFRIEKGKIVKSVEMNAPNYY"
ORIGIN
1 gtaatgaccg atggaccaag tgatggacag gcctcataca agatcttcag aatagaaaag
61 ggaaagatag tcaaatcagt cgaaatgaat gcccctaatt attacta

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