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PostPosted: Thu May 17, 2012 7:49 am 
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Three of the residues identified here (N224, Q226 and T318) have been strictly conserved among H5 HA proteins isolated since 2003. However, as H5N1 viruses continue to evolve and infect people, receptor-binding variants of H5N1 viruses, including avian–human reassortant viruses as tested here, may emerge. One of the four mutations we identified in our transmissible virus, the N158D mutation, results in loss of a glycosylation site. Many H5N1 viruses isolated in the Middle East, Africa, Asia and Europe do not have this glycosylation site. Therefore, only three nucleotide changes are needed for the HA of these viruses to support efficient transmission in ferrets. In addition, the H5N1 viruses circulating in these geographic areas also possess a glutamic-acid-to-lysine mutation at position 627 in the PB2 protein, which promotes viral replication in certain mammals, including humans40, 45. Therefore, these viruses may be several steps closer to those capable of efficient transmission in humans and are of concern.
http://www.nature.com/nature/journal/va ... 10831.html

The above description notes the widespread presence of N158D (and/or T160A), which eliminates the glycosylation site at position 158. Also noted is E627K, which is fixed in clade 2.2.

However. no mention is made of A242S or A242T which are found in transmitting H5N1 in ferrets. Both chngaes crreate a glycosylation site at position 240, and most clade 2.2.1 F sequences in Egypt or Israel collected since 2009 have A242T and the associated glycosylation at position 240.

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PostPosted: Thu May 17, 2012 8:07 am 
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GUESTS
5-14-12 thru 5-20-12

--------------------------------------------------------------------------------
Dr. Henry L. Niman, PhD
H1N1

http://www.rense.com/about/guests.htm

Nature (and related) H5N1 transmission studies will be discussed in detail at 10 PM EDT on rense.

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PostPosted: Thu May 17, 2012 11:31 am 
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Commentary

http://www.recombinomics.com/News/05171 ... Egypt.html

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PostPosted: Thu May 17, 2012 7:28 pm 
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niman wrote:
GUESTS
5-14-12 thru 5-20-12

--------------------------------------------------------------------------------
Dr. Henry L. Niman, PhD
H1N1

http://www.rense.com/about/guests.htm

Nature (and related) H5N1 transmission studies will be discussed in detail at 10 PM EDT on rense.

Interview will cover spreading Tamiflu resistance in Texas / Mexico, as well as A242T/S and H5N1 transmisison (including Egypt).

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PostPosted: Fri May 18, 2012 5:41 am 
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niman wrote:
niman wrote:
GUESTS
5-14-12 thru 5-20-12

--------------------------------------------------------------------------------
Dr. Henry L. Niman, PhD
H1N1

http://www.rense.com/about/guests.htm

Nature (and related) H5N1 transmission studies will be discussed in detail at 10 PM EDT on rense.

Interview will cover spreading Tamiflu resistance in Texas / Mexico, as well as A242T/S and H5N1 transmisison (including Egypt).

A242T and recombination discussed in latter part of interview

http://rense.gsradio.net:8080/rense/spe ... 051712.mp3

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PostPosted: Fri Jun 15, 2012 9:26 am 
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niman wrote:
Rapid Evolution of Vaccine Resistant H5N1 in Cairo Egypt
Recombinomics Commentary 20:57
November 09, 2008

HA sequences from last season’s Egyptian cases were recently released at Genbank by NAMRU-3. Most of the sequences were related to isolates from the 2007/2008 season, including two isolates with the 3 BP deletion (Egypt/2289-NAMRU-3/2008 and Egypt/2546-NARMRU-3/2008), as well as four isolates related to the milder cases in southern Egypt (Egypt/10211-NAMRU3/2007, Egypt/1980-NAMRU3/2008, Egypt/2514-NAMRU3/2008, Egypt/3158-NAMRU3/2008).........


The fatal case (30F) in Cairo (Egypt/3300-NAMRU3/2008), had the changes seen in the vaccine resistant poultry isolates, as well as a large number of additional non-synonymous changes, raising concerns of rapid evolution away from the vaccine targets. Included in the additional changes in the human case were S134L (position 134 is deleted in the isolates with the 3 BP deletion), D159N and A161T which create a new glycosylation site at position 159, L194I (between receptor binding positions 190 and 196), Q196K (Q196R is receptor binding domain change in Iraqi cluster), and A242T which creates a glycosylation site at position 240 (all of the above positions use H3 numbering)..........


http://www.recombinomics.com/News/11090 ... Cairo.html

Q196K in Shenzhen (39M) and Guangdong (2M) cases in China

viewtopic.php?f=5&t=8116

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PostPosted: Tue Jul 24, 2012 6:56 am 
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Thread on CEIRS meeting in New York

viewtopic.php?f=5&t=8160

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