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niman
PostPosted: Tue Jun 26, 2012 1:15 pm 
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Posts: 27559
Location: Pittsburgh, PA USA
The Iowa State University Veterinary Department / USDA have released a large series of swine sequences (at Genbank) largely from late 2011 and 2012. Included were sets of sequences from four isolates with H3 closely related to the H3N2v sequences from human cases. All four isolates also had an H1N1pdm09 M gene. In the past, all such isolates with H3 and M genes matching the human 2011 and 2012 case also matched in all other genes with the exception of N2, which was human and related to seasonal H3n2 from 2003, but evolved into two distinct linages in swine (the initial 2011 human cases were from a swine H1N2 lineage, while the three most recent cases included an N2 from swine H3N2 lineage.

The of the recently released sequences matched the initial 2011 human cases, but one of the recent swine isolates, A/swine/Illinois/A00857318a/2012, matched 7 of the 8 genes. The NP gene however was from H1N1pdm09, raising concerns that this novel constellation could jump from swine to humans.

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niman
PostPosted: Tue Jun 26, 2012 1:17 pm 
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Location: Pittsburgh, PA USA
LOCUS JX099414 1497 bp cRNA linear VRL 23-JUN-2012
DEFINITION Influenza A virus (A/swine/Illinois/A00857318a/2012(H3N2)) segment
5 nucleocapsid protein (NP) gene, complete cds.
ACCESSION JX099414
VERSION JX099414.1 GI:391886365
KEYWORDS .
SOURCE Influenza A virus (A/swine/Illinois/A00857318a/2012(H3N2))
ORGANISM Influenza A virus (A/swine/Illinois/A00857318a/2012(H3N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1497)
CONSRTM USDA Swine Surveillance
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2012) USDA, Ames, IA 50010, USA
COMMENT GenBank Accession Numbers JX099410-JX099417 represent sequences
from the 8 segments of Influenza A virus
(A/swine/Illinois/A00857318a/2012(H3N2)).
FEATURES Location/Qualifiers
source 1..1497
/organism="Influenza A virus
(A/swine/Illinois/A00857318a/2012(H3N2))"
/mol_type="viral cRNA"
/strain="A/swine/Illinois/A00857318a/2012"
/serotype="H3N2"
/isolation_source="lung"
/host="swine"
/db_xref="taxon:1194230"
/segment="5"
/country="USA: Illinois"
/collection_date="23-Feb-2012"
gene 1..1497
/gene="NP"
CDS 1..1497
/gene="NP"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="AFM47201.1"
/db_xref="GI:391886366"
/translation="MASQGTKRSYEQMETGGERQDATEIRASVGRMVAGIGRFYIQMC
TELKLSDYEGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDG
KWMRELTLYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMD
PRMCSLMQGSTLPRRSGAAGAAVKGVGTIVMELIRMIKRGINDRNFWRGENGRRTRVA
YERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCL
PACVYGLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACH
SAAFEDLRVSSFIRGKKVIPRGKLSTRGVQIASNENVEPMDSNTLELRSRYWAIRTRS
GGNTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMES
AKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDS"
ORIGIN
1 atggcgtctc aaggcaccaa acgatcatat gaacaaatgg agactggtgg ggagcgccag
61 gatgccacag aaatcagagc atctgtcgga agaatggttg ctggaatcgg gagattttac
121 atccaaatgt gcactgaact caaactcagt gattatgagg gacgactaat ccagaacagc
181 ataacaatag agaggatggt gctttctgct tttgatgaga gaagaaataa atacctagaa
241 gagcatccca gtgctgggaa ggatcctaag aaaacaggag gacccatata tagaagaata
301 gacggaaagt ggatgagaga actcaccctt tatgacaaag aagaaataag gagagtttgg
361 cgccaagcaa acaatggcga agatgcaaca gcaggtctta ctcatatcat gatttggcat
421 tccaacctga atgatgccac atatcagaga acaagagctc ttgttcgcac cggaatggat
481 cccagaatgt gctctctaat gcaaggttca acacttccca gaaggtctgg tgccgcaggt
541 gcggcggtga aaggagttgg aacaatagta atggagttaa tcagaatgat caaacgtgga
601 atcaatgacc gaaatttctg gaggggtgaa aatggacgaa ggacaagggt tgcttatgaa
661 agaatgtgca atatcctcaa aggaaaattt caaacagctg cacagagggc aatgatggat
721 caagtaagag aaagtcgaaa cccaggaaac gctgaaattg aagacctcat tttcctggca
781 cggtcagcac tcattctgag gggatcagtt gcacataaat cctgcctgcc tgcttgtgtg
841 tatgggcttg cagtagcaag tgggcatgac tttgaaaggg aagggtactc actggtcggg
901 atagacccat tcaaattact ccaaaacagc caagtggtca gcctgatgag accaaatgaa
961 aacccagctc acaagagtca attggtgtgg atggcatgcc actctgctgc atttgaagat
1021 ttaagagtat caagtttcat aagaggaaag aaagtgattc caagaggaaa gctttccaca
1081 agaggggtcc agattgcttc aaatgagaat gtggaaccca tggactccaa taccctggaa
1141 ctaagaagca gatactgggc cataaggacc aggagtggag gaaataccaa tcaacaaaag
1201 gcatccgcag gccagatcag tgtgcagcct acattctcag tacagcgaaa tctccctttt
1261 gaaagagcaa ccgttatggc agcgttcagc gggaacaatg aaggacggac atctgacatg
1321 cgaacagaag ttataagaat gatggaaagt gcaaagccag aagatttgtc cttccagggg
1381 cggggagtct tcgagctctc ggacgaaaag gcaacgaacc cgatcgtgcc ttcctttgac
1441 atgagtaatg aagggtctta tttcttcgga gacaatgcag aggagtatga cagttga

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niman
PostPosted: Tue Jun 26, 2012 1:24 pm 
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Posts: 27559
Location: Pittsburgh, PA USA
Top 100 NP matches at GISAID

EPI347197 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 5 (NP) 2710.2 0.000000e+00 1485/1494 (99%)
EPI295325 A/swine/Minnesota/165A/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI295292 A/swine/Minnesota/074A/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI295284 A/swine/Minnesota/074A/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI255003 A/New York/7019/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI251914 A/Wisconsin/55/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI247979 A/Wisconsin/629-D00802/2009 (A/H1N1 pdm09) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI295317 A/swine/Minnesota/165A/2009 (A/H1N1 pdm09) segment 5 (NP) 2684.3 0.000000e+00 1482/1497 (98%)
EPI374202 A/Malaysia/2126082/2009 (A/H1N1) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI312690 A/swine/Minnesota/239105/2009 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI295309 A/swine/Minnesota/136B/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI295304 A/swine/Minnesota/130A/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI295296 A/swine/Minnesota/130A/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI282442 A/Managua/1909.02/2009 (A/H1N1) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI274986 A/Guam/NHRC0028/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI274962 A/Guam/NHRC0025/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI273689 A/Minnesota/40/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI257165 A/KAGOSHIMA/56/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI254915 A/New York/3251/2010 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI254907 A/New York/3250/2010 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI253455 A/Ningxia/SWL2/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI252084 A/Texas/75/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI249583 A/Managua/2323.02/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI248131 A/Wisconsin/629-D01346/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI247931 A/Wisconsin/629-D00629/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI247787 A/Wisconsin/629-D00050/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI247021 A/Wisconsin/629-D02041/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI245388 A/District of Columbia/INS31/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI227709 A/Minnesota/15/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226553 A/YOKOHAMA/1394/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226513 A/YAMAGUCHI/58/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226497 A/YAMAGUCHI/52/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226481 A/YAMAGATA/313/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226449 A/SHIZUOKA/851/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226417 A/SHIMANE/1010/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226345 A/OKINAWA/259/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226281 A/NIIGATA/871/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226249 A/NIIGATA-C/56/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI226017 A/KUMAMOTO/161/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225977 A/IWATE/1086/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225969 A/HOKKAIDO/200/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225953 A/HIROSHIMA/316/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225929 A/HIROSHIMA/239/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225921 A/HIROSHIMA-C/242/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225913 A/HIMEJI/L1/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225881 A/FUKUOKA-C/26/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225873 A/FUKUI/73/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI225849 A/CHIBA-C/131/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI218298 A/New York/4844/2009 (A/H1N1 pdm09) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI376062 A/Hong Kong/H090-661-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI376038 A/Hong Kong/H090-787-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI376030 A/Hong Kong/H090-785-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375990 A/Hong Kong/H090-774-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375982 A/Hong Kong/H090-772-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375950 A/Hong Kong/H090-762-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375934 A/Hong Kong/H090-759-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375926 A/Hong Kong/H090-758-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375910 A/Hong Kong/H090-751-V34/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375902 A/Hong Kong/H090-751-V31/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375894 A/Hong Kong/H090-751-V24/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375886 A/Hong Kong/H090-751-V23/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375870 A/Hong Kong/H090-751-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375862 A/Hong Kong/H090-746-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375838 A/Hong Kong/H090-738-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375774 A/Hong Kong/H090-704-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375750 A/Hong Kong/H090-693-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375742 A/Hong Kong/H090-684-V23/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375734 A/Hong Kong/H090-684-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375726 A/Hong Kong/H090-683-V20/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375718 A/Hong Kong/H090-683-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375694 A/Hong Kong/H090-678-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375656 A/Hong Kong/H090-745-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375643 A/Hong Kong/H090-693-V20/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI375004 A/Scotland/Paisley_417557/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374696 A/Mexico/InDRECTRLA/2010 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374194 A/Malaysia/2072040/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374186 A/Malaysia/2076756/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374146 A/Malaysia/2156796/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374130 A/Malaysia/2135565/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374122 A/Malaysia/2126061/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374106 A/Malaysia/2098053/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374082 A/Malaysia/2089888/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374066 A/Malaysia/2086505/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374058 A/Malaysia/2082543/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374050 A/Malaysia/2077462/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374034 A/Malaysia/2076204/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374026 A/Malaysia/2068631/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374018 A/Malaysia/2050837/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374010 A/Malaysia/2143696/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI374002 A/Malaysia/2142299/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI373994 A/Malaysia/2142295/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362289 A/Hong Kong/H090-787-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362281 A/Hong Kong/H090-785-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362233 A/Hong Kong/H090-774-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362225 A/Hong Kong/H090-772-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362184 A/Hong Kong/H090-762-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362168 A/Hong Kong/H090-759-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362160 A/Hong Kong/H090-758-V10/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362144 A/Hong Kong/H090-751-V34/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI362136 A/Hong Kong/H090-751-V31/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)

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niman
PostPosted: Tue Jun 26, 2012 1:27 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
H3 matches

EPI369064 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%)
EPI369056 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI366030 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI369048 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI369037 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI369022 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI346440 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI346432 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI346424 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3099.8 0.000000e+00 1693/1701 (99%)
EPI351662 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI351653 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI347607 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI347604 A/Iowa/07/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI367851 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI346493 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3083.2 0.000000e+00 1690/1701 (99%)
EPI361495 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI348782 A/Indiana/10/2011 X-213 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI367697 A/swine/Minnesota/A01134337/2010 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI361505 A/swine/Illinois/A01076719/2010 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI361493 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%)
EPI344405 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3059.2 0.000000e+00 1686/1701 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3059.2 0.000000e+00 1686/1701 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 3055.5 0.000000e+00 1685/1701 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 3001.9 0.000000e+00 1659/1676 (98%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2928.1 0.000000e+00 1607/1618 (99%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2898.5 0.000000e+00 1659/1703 (97%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1656/1702 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1654/1703 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1653/1704 (97%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1650/1703 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1703 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2837.6 0.000000e+00 1648/1703 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1648/1704 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1648/1704 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1648/1704 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1645/1704 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2813.6 0.000000e+00 1636/1691 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1644/1704 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1643/1703 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2806.2 0.000000e+00 1641/1702 (96%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2796.9 0.000000e+00 1633/1691 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2795.1 0.000000e+00 1632/1690 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1641/1704 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1639/1703 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1640/1704 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1632/1694 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2772.9 0.000000e+00 1638/1704 (96%)
EPI367785 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1701 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI354961 A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 4 (HA) 2767.4 0.000000e+00 1635/1702 (96%)
EPI317007 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1637/1705 (96%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1634/1702 (96%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1636/1705 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1636/1705 (95%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI367790 A/swine/Iowa/A01076632/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1635/1705 (95%)
EPI367789 A/swine/Iowa/A01076630/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1635/1705 (95%)
EPI361432 A/swine/Minnesota/A01047396/2011 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1631/1701 (95%)
EPI347613 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1632/1702 (95%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1635/1705 (95%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)

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niman
PostPosted: Tue Jun 26, 2012 1:28 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
N2 matches

EPI369066 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI369058 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2590.1 0.000000e+00 1407/1410 (99%)
EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2586.4 0.000000e+00 1406/1410 (99%)
EPI369050 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369039 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369024 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI367809 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369161 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369158 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367700 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367692 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367691 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367690 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367689 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367688 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367687 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367686 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367685 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367684 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367683 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367682 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367681 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367680 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367679 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367678 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367677 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367674 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367673 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367672 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI367671 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI371302 A/swine/Illinois/A01201950/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369172 A/swine/Illinois/A01201287/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369165 A/swine/Illinois/A01134736/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369164 A/swine/Illinois/A01134729/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI368357 A/swine/Illinois/A01047525/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI367694 A/swine/Illinois/A01047518/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI371685 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 6 (NA) 2568.0 0.000000e+00 1403/1410 (99%)
EPI369171 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 6 (NA) 2568.0 0.000000e+00 1403/1410 (99%)
EPI376208 A/swine/Ohio/FAH11-1/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI371686 A/swine/Minnesota/A01134333/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI371329 A/swine/Minnesota/A01134593/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369176 A/swine/Illinois/A01201487/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369167 A/swine/Illinois/A01134426/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369155 A/swine/Illinois/A01134433/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369134 A/swine/Illinois/A01134269/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI369133 A/swine/Illinois/A01134264/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI368359 A/swine/Illinois/A01047805/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI368358 A/swine/Illinois/A01047779/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1401/1407 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI371310 A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 6 (NA) 2562.4 0.000000e+00 1402/1410 (99%)
EPI371690 A/swine/Minnesota/A01134339/2010 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI371332 A/swine/Minnesota/A01201294/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI371301 A/swine/Illinois/A01201919/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI369166 A/swine/Illinois/A01134738/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI369157 A/swine/Illinois/A01134581/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI368360 A/swine/Illinois/A01047806/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI353689 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI353681 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)

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niman
PostPosted: Tue Jun 26, 2012 1:29 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
MP matches

EPI369067 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI369059 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI347602 A/Iowa/07/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI346435 A/Iowa/08/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI346427 A/Iowa/07/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI346419 A/Iowa/09/2011 (A/H3N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI341736 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%)
EPI353674 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%)
EPI347605 A/Iowa/08/2011 (A/H3N2) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%)
EPI367614 A/swine/Iowa/A01243102/2012 (A/H1N1) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%)
EPI353675 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%)
EPI371676 A/swine/Missouri/A01240016/2011 (A/H3N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI367704 A/swine/Missouri/A01240017/2011 (A/H3N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI361459 A/swine/Missouri/A01047969/2010 (A/H3N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI350986 A/Shenzhen/63/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI342600 A/swine/NY/A01104005/2011 (A/H3N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI341732 A/swine/Iowa/A01202033/2011 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI341731 A/swine/Iowa/A01202034/2011 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI338531 A/swine/Iowa/A01049755/2011 (A/H1N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI338530 A/swine/Iowa/A01049765/2011 (A/H1N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI338529 A/swine/Iowa/A01049766/2011 (A/H1N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI324199 A/swine/MB/31/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI324183 A/swine/MB/10422/2009 (A/H1N1) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI252549 A/Ontario/9698/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI214088 A/Toronto/T9842/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI214080 A/Toronto/T5362/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186737 A/Canada-MB/RV2020/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186735 A/Canada-MB/RV2013/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186734 A/Canada-MB/RV1982/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186733 A/Canada-MB/RV1977/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186731 A/Canada-MB/RV1964/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI186718 A/Canada-MB/RV2023/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI180276 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI179594 A/Shandong/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%)
EPI346488 A/West Virginia/06/2011 (A/H3N2) segment 7 (MP) 1779.4 0.000000e+00 969/972 (99%)
EPI342699 A/Iowa/09/2011 (A/H3N2) segment 7 (MP) 1779.4 0.000000e+00 967/969 (99%)
EPI223298 A/Texas/42163291/2009 (A/H1N1 pdm09) segment 7 (MP) 1777.6 0.000000e+00 975/982 (99%)
EPI376020 A/Hong Kong/H090-779-V22/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI376012 A/Hong Kong/H090-779-V21/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI376004 A/Hong Kong/H090-779-V12/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI375996 A/Hong Kong/H090-779-V10/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI375661 A/Hong Kong/H090-779-V20/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI375002 A/Scotland/Paisley_409499/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI369051 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI369025 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI362271 A/Hong Kong/H090-779-V22/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI362263 A/Hong Kong/H090-779-V21/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI362255 A/Hong Kong/H090-779-V20/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI362247 A/Hong Kong/H090-779-V12/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI362239 A/Hong Kong/H090-779-V10/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI361451 A/swine/Missouri/A01047968/2010 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360156 A/Korea/01-2-9/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360153 A/Korea/01-2-7/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360150 A/Korea/01-2-3/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360147 A/Korea/01-2-11/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360144 A/Korea/01-2-1/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360141 A/Korea/01-13-4/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI360138 A/Korea/01-1-4/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359981 A/Korea/01-9-7/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359978 A/Korea/01-2-8/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359975 A/Korea/01-2-5/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359972 A/Korea/01-2-2/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359969 A/Korea/01-2-10/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359966 A/Korea/01-17-3/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI359963 A/Korea/01-10-3/2009 (A/H1N1) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI357822 A/swine/Saraburi/NIAH116627-24/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI355002 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI351657 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI349420 A/England/433/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI349412 A/England/431/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI349009 A/England/414/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348985 A/England/400/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348937 A/England/388/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348748 A/England/361/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348740 A/England/359/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348724 A/England/266/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348644 A/England/XFL00419/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348620 A/England/257/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348612 A/England/256/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348596 A/England/254/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348588 A/England/253/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348580 A/England/XFL00311/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348572 A/England/252/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348564 A/England/XFL00304/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348556 A/England/XFL00300/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348548 A/England/XFL00275/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348540 A/England/XFL00200/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348532 A/England/247/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348516 A/England/201/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348508 A/England/220/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348500 A/England/219/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348433 A/England/246/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348425 A/England/218/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348392 A/Scotland/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348384 A/England/216/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348372 A/England/215/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348354 A/England/XFL00137/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348346 A/England/211/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348308 A/England/205/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
EPI348298 A/England/204/2009 (A/H1N1 pdm09) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)

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niman
PostPosted: Tue Jun 26, 2012 1:30 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
EPI369061 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%)
EPI369053 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%)
EPI335607 A/Pennsylvania/09/2011 (A/H3N2) segment 1 (PB2) 4174.5 0.000000e+00 2273/2280 (99%)
EPI344402 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%)
EPI333194 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%)
EPI342606 A/swine/NY/A01104005/2011 (A/H3N2) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%)
EPI369042 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI369034 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI369019 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI351659 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI351650 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI344394 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
EPI345358 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI335626 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4126.5 0.000000e+00 2248/2255 (99%)
EPI346437 A/Iowa/08/2011 (A/H3N2) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI346429 A/Iowa/07/2011 (A/H3N2) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI346421 A/Iowa/09/2011 (A/H3N2) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
EPI340981 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4098.8 0.000000e+00 2247/2261 (99%)
EPI371358 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%)
EPI371374 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%)
EPI371369 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI371363 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%)
EPI367848 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2252/2280 (98%)
EPI342685 A/Iowa/07/2011 (A/H3N2) segment 1 (PB2) 4056.4 0.000000e+00 2228/2244 (99%)
EPI314788 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%)
EPI351683 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%)
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 4047.1 0.000000e+00 2239/2263 (98%)
EPI351677 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2250/2280 (98%)
EPI312977 A/Pennsylvania/40/2010 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2241/2267 (98%)
EPI342701 A/Iowa/09/2011 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2219/2235 (99%)
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2237/2263 (98%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2233/2257 (98%)
EPI293962 A/Minnesota/11/2010 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2241/2270 (98%)
EPI342693 A/Iowa/08/2011 (A/H3N2) segment 1 (PB2) 4021.3 0.000000e+00 2209/2225 (99%)
EPI346498 A/Minnesota/19/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2234/2265 (98%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 4004.7 0.000000e+00 2232/2264 (98%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 3984.3 0.000000e+00 2231/2268 (98%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI369069 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 1 (PB2) 3978.8 0.000000e+00 2238/2280 (98%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 3973.3 0.000000e+00 2231/2271 (98%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 3973.3 0.000000e+00 2231/2271 (98%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 3973.3 0.000000e+00 2233/2274 (98%)
EPI347209 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 1 (PB2) 3967.7 0.000000e+00 2234/2277 (98%)
EPI337408 A/swine/Minnesota/02782/2009 (A/H3N2) segment 1 (PB2) 3967.7 0.000000e+00 2236/2280 (98%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 3965.9 0.000000e+00 2232/2275 (98%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 3958.5 0.000000e+00 2225/2266 (98%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%)
EPI307926 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%)
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3945.6 0.000000e+00 2230/2277 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3943.7 0.000000e+00 2231/2279 (97%)
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 3943.7 0.000000e+00 2213/2252 (98%)
EPI366027 A/Utah/10/2012 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2217/2260 (98%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3927.1 0.000000e+00 2228/2279 (97%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI295332 A/swine/South Dakota/152B/2009 (A/H1N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3912.3 0.000000e+00 2224/2277 (97%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3884.6 0.000000e+00 2220/2280 (97%)
EPI361445 A/swine/Missouri/A01047968/2010 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI356790 A/swine/North Carolina/3793/2008 (A/H1N1) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%)
EPI354996 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI353830 A/swine/Illinois/A01047528/2010 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI337608 A/swine/Illinois/02510/2009 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI337576 A/swine/Illinois/02695/2009 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI361421 A/swine/Illinois/A01047188/2010 (A/H3N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI356646 A/swine/North Carolina/A01076199/2010 (A/H3N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI337584 A/swine/Illinois/02385/2008 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI337544 A/swine/Minnesota/02475/2008 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%)
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 3860.6 0.000000e+00 2206/2264 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 3856.9 0.000000e+00 2216/2279 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI351689 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%)

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niman
PostPosted: Tue Jun 26, 2012 1:32 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
EPI369062 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%)
EPI369054 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%)
EPI369043 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%)
EPI369035 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%)
EPI369020 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%)
EPI351651 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%)
EPI344403 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI344395 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI344387 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI351660 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 2 (PB1) 4145.0 0.000000e+00 2265/2275 (99%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%)
EPI340982 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4143.2 0.000000e+00 2261/2270 (99%)
EPI366028 A/Utah/10/2012 (A/H3N2) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%)
EPI346491 A/West Virginia/06/2011 (A/H3N2) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%)
EPI342605 A/swine/NY/A01104005/2011 (A/H3N2) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%)
EPI347202 A/swine/Ohio/FAH2-1/2008 (A/H1N1) segment 2 (PB1) 4106.2 0.000000e+00 2255/2271 (99%)
EPI347194 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 2 (PB1) 4106.2 0.000000e+00 2255/2271 (99%)
EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%)
EPI346438 A/Iowa/08/2011 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI346430 A/Iowa/07/2011 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI346422 A/Iowa/09/2011 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI342702 A/Iowa/09/2011 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI342686 A/Iowa/07/2011 (A/H3N2) segment 2 (PB1) 4076.7 0.000000e+00 2245/2264 (99%)
EPI371349 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%)
EPI342694 A/Iowa/08/2011 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2230/2249 (99%)
EPI371354 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 2 (PB1) 4034.2 0.000000e+00 2245/2275 (98%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3956.6 0.000000e+00 2222/2262 (98%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%)
EPI295333 A/swine/South Dakota/152B/2009 (A/H1N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2225/2271 (97%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI351690 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2221/2271 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2223/2275 (97%)
EPI369070 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI351684 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%)
EPI293963 A/Minnesota/11/2010 (A/H3N2) segment 2 (PB1) 3897.6 0.000000e+00 2218/2274 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3892.0 0.000000e+00 2219/2275 (97%)
EPI367849 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI351678 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI312979 A/Pennsylvania/40/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI291895 A/Wisconsin/12/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI291867 A/Pennsylvania/14/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3888.3 0.000000e+00 2217/2273 (97%)
EPI337559 A/swine/Illinois/02251/2008 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2219/2276 (97%)
EPI346914 A/Wisconsin/28/2011 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI337583 A/swine/Illinois/02385/2008 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2217/2276 (97%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI371359 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI302680 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%)
EPI371370 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%)
EPI337607 A/swine/Illinois/02510/2009 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2215/2276 (97%)
EPI337575 A/swine/Illinois/02695/2009 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2215/2276 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2214/2275 (97%)
EPI188120 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 2 (PB1) 3860.6 0.000000e+00 2198/2252 (97%)
EPI371364 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 2 (PB1) 3858.8 0.000000e+00 2212/2274 (97%)
EPI371375 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI302668 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3853.2 0.000000e+00 2205/2264 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%)

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niman
PostPosted: Tue Jun 26, 2012 1:33 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
EPI369063 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%)
EPI369055 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%)
EPI344401 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI333149 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%)
EPI335617 A/Pennsylvania/11/2011 (A/H3N2) segment 3 (PA) 3943.7 0.000000e+00 2145/2151 (99%)
EPI366026 A/Utah/10/2012 (A/H3N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI351661 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI346489 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI342604 A/swine/NY/A01104005/2011 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI369044 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI369021 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI351652 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI371376 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI371360 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI369036 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI367850 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI351685 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI344393 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI344386 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI340980 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%)
EPI371371 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI351679 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI346436 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI346428 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI346420 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI342700 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI342692 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI342684 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI371365 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 3 (PA) 3897.6 0.000000e+00 2137/2151 (99%)
EPI339167 A/Maine/06/2011 (A/H3N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI302667 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI291866 A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI335628 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3886.5 0.000000e+00 2112/2116 (99%)
EPI302674 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI346497 A/Minnesota/19/2011 (A/H1N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI369071 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%)
EPI337462 A/swine//Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3796.0 0.000000e+00 2120/2152 (98%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3790.4 0.000000e+00 2120/2153 (98%)
EPI347211 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 3 (PA) 3784.9 0.000000e+00 2115/2148 (98%)
EPI337414 A/swine/Minnesota/01862/2007 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2118/2152 (98%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI153495 A/swine/Ohio/24366/07 (A/H1N1) segment 3 (PA) 3766.4 0.000000e+00 2099/2129 (98%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3762.7 0.000000e+00 2115/2153 (98%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3759.1 0.000000e+00 2100/2132 (98%)
EPI347203 A/swine/Ohio/FAH2-1/2008 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2110/2148 (98%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI307928 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 3 (PA) 3757.2 0.000000e+00 2114/2153 (98%)
EPI295331 A/swine/South Dakota/152B/2009 (A/H1N2) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI166283 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 3 (PA) 3749.8 0.000000e+00 2092/2123 (98%)
EPI337582 A/swine/Illinois/02385/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI337526 A/swine/Minnesota/001581/2007 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI281283 A/swine/Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2151 (98%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2108/2148 (98%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI337598 A/swine/Illinois/01917/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%)
EPI337558 A/swine/Illinois/02251/2008 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2111/2153 (98%)
EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI337606 A/swine/Illinois/02510/2009 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2110/2153 (98%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2094/2130 (98%)
EPI337574 A/swine/Illinois/02695/2009 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI166271 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2102/2143 (98%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI281276 A/swine/Nebraska/02013/2008 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2105/2150 (97%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI351691 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI166274 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 3 (PA) 3712.9 0.000000e+00 2090/2130 (98%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2105/2153 (97%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI361423 A/swine/Illinois/A01047188/2010 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%)

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niman
PostPosted: Tue Jun 26, 2012 1:38 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27559
Location: Pittsburgh, PA USA
EPI369068 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI369060 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI344399 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI335633 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI333147 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI371373 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI367855 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI351688 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI351682 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI346495 A/Minnesota/19/2011 (A/H1N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335625 A/Pennsylvania/10/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335622 A/Pennsylvania/11/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335614 A/Pennsylvania/09/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI314794 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI312978 A/Pennsylvania/40/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI293969 A/Minnesota/11/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI291889 A/Wisconsin/12/2010 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI371378 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI371367 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI371362 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI366024 A/Utah/10/2012 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI342599 A/swine/NY/A01104005/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI302684 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI302681 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI302669 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI291861 A/Pennsylvania/14/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI291834 A/Minnesota/09/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI244304 A/Kansas/13/2009 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI346434 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI346426 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI346418 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI342698 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI342690 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI291819 A/Michigan/09/2007 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI339165 A/Maine/06/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%)
EPI302672 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 834/839 (99%)
EPI369052 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%)
EPI369041 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%)
EPI369026 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%)
EPI351658 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%)
EPI344391 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 833/839 (99%)
EPI344384 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 833/839 (99%)
EPI340978 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1515.4 0.000000e+00 833/839 (99%)
EPI346487 A/West Virginia/06/2011 (A/H3N2) segment 8 (NS) 1509.8 0.000000e+00 823/826 (99%)
EPI323271 A/swine/Minnesota/66960/2006 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%)
EPI342682 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1485.8 0.000000e+00 812/816 (99%)
EPI347217 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI291903 A/Ohio/02/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI291854 A/Ohio/01/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI173662 A/swine/OH/511445/2007 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI337461 A/swine//Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291784 A/Illinois/09/2007 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI281223 A/swine/Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI15030 A/SW/IN/14810-S/01 (A/H1N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI15028 A/SW/IN/14810-T/01 (A/H1N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI307933 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%)
EPI291960 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI291952 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI222648 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%)
EPI222639 A/swine/Kansas/77778/2007 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%)
EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164075 A/swine/Korea/CAS09/2006 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337360 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI335025 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI291963 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI164074 A/swine/Korea/CAS07/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI164073 A/swine/Korea/CAN04/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI164062 A/swine/Korea/CAS08/2005 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI25405 A/turkey/North Carolina/12344/03 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI9401 A/Swine/Ohio/891/01 (A/H1N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%)
EPI164061 A/swine/Korea/CAN01/2004 (A/H1N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI98736 A/swine/IN/PU542/04 (A/H3N1) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI15276 A/Swine/Korea/CY02/02 (A/H1N2) segment 8 (NS) 1437.8 0.000000e+00 818/838 (97%)
EPI255765 A/swine/MN/48683/2002 (A/H1N1) segment 8 (NS) 1436.0 0.000000e+00 817/837 (97%)
EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 1432.3 0.000000e+00 817/838 (97%)
EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 1432.3 0.000000e+00 817/838 (97%)
EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1432.3 0.000000e+00 817/838 (97%)
EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1432.3 0.000000e+00 817/838 (97%)

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