Rhiza Labs FluTracker Forum

>132v_11    ,>13*5       ,>13*          ,  2071,1697,1409 ,     ,>JQ914812 A/Sw/IN/A01049653/2011(H3N2) segment 1
>132v_11    ,>13*5       ,>13*          ,  2079,1708,1425 ,     ,>JQ914807 A/Sw/IN/A01049745/2011(H3N2) segment 1
>132v_11    ,>13*5       ,>13*          ,  2107,1700,1411 ,     ,>JQ914817 A/Sw/IN/A01049744/2011(H3N2) segment 1
>132v_11    ,>13*5       ,>13*          ,  2119,1736,1438 ,     ,>JQ914802 A/Sw/NC/A01049436/2011(H3N2) segment 1
.
>232v_11    ,>23*5       ,>23*          ,  1982,1721,1468 ,     ,>JQ914798 A/Sw/IO/A01049112/2010(H3N2) segment 2
.
>332v_11    ,>33*5       ,>33*          ,  1990,1714,1515 ,     ,>JQ914809 A/Sw/IN/A01049745/2011(H3N2) segment 3
>332v_11    ,>33*5       ,>33*          ,  2002,1721,1512 ,     ,>JQ914814 A/Sw/IN/A01049653/2011(H3N2) segment 3
>332v_11    ,>33*5       ,>33*          ,  2014,1733,1515 ,     ,>JQ914819 A/Sw/IN/A01049744/2011(H3N2) segment 3
>332v_11    ,>33*5       ,>33*          ,  2014,1733,1520 ,     ,>JQ914804 A/Sw/NC/A01049436/2011(H3N2) segment 3
.
>4332v_11   ,>433*5      ,>433_97       ,  1614,1224, 782 ,     ,>JN652415 A/Sw/IN/A01049653/2011(H3N2) segment 4
>4332v_11   ,>433*5      ,>433_97       ,  1626,1248, 793 ,     ,>JN652491 A/Sw/IN/A01049744/2011(H3N2) segment 4
>4332v_11   ,>433*5      ,>433_97       ,  1626,1248, 793 ,     ,>JN652492 A/Sw/IN/A01049745/2011(H3N2) segment 4
>4332v_11   ,>433*5      ,>433_97       ,  1650,1247, 803 ,     ,>JN162059 A/Sw/NC/A01049436/2011(H3N2) segment 4
.
>532v_11    ,>53*5       ,>53*          ,  1150,1009,1001 ,     ,>JQ914790 A/Sw/IO/A01049032/2010(H3N2) segment 5
>532v_11    ,>53*5       ,>53*          ,  1471,1111,1050 ,     ,>JQ914810 A/Sw/IN/A01049745/2011(H3N2) segment 5
>532v_11    ,>53*5       ,>53*          ,  1471,1111,1050 ,     ,>JQ914820 A/Sw/IN/A01049744/2011(H3N2) segment 5
>532v_11    ,>53*5       ,>53*          ,  1471,1111,1062 ,     ,>JQ914805 A/Sw/NC/A01049436/2011(H3N2) segment 5
>532v_11    ,>53*5       ,>53*          ,  1483,1123,1062 ,     ,>JQ914815 A/Sw/IN/A01049653/2011(H3N2) segment 5
.
>6232v_11   ,>623*5      ,>62Fujr       ,  1041, 930, 880 ,     ,>JQ906924 A/Sw/MN/A01134598/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1042, 941, 888 ,     ,>JQ906903 A/Sw/KA/A01076181/2009(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1045, 982, 930 ,     ,>JQ906909 A/Sw/MN/A01076331/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1056, 906, 849 ,     ,>JQ906914 A/Sw/MN/A01116140/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1193, 757, 700 ,     ,>JQ906916 A/Sw/MN/A01116842/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1196, 891, 839 ,     ,>JQ906922 A/Sw/MN/A01134528/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1205, 863, 855 ,     ,>JQ906900 A/Sw/IO/A01076148/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1259, 824, 773 ,     ,>JQ906897 A/Sw/IL/A01201983/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1259, 824, 773 ,     ,>JQ906898 A/Sw/IL/A01201985/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1260, 822, 751 ,     ,>JQ906892 A/Sw/IL/A01201530/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1260, 822, 751 ,     ,>JQ906893 A/Sw/IL/A01201531/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1271, 822, 757 ,     ,>JQ906917 A/Sw/MN/A01134226/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1277, 839, 762 ,     ,>JQ906894 A/Sw/IL/A01201768/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1283, 834, 769 ,     ,>JQ906918 A/Sw/MN/A01134236/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1283, 839, 770 ,     ,>JQ906925 A/Sw/MN/A01201102/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1289, 846, 781 ,     ,>JQ906919 A/Sw/MN/A01134248/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1294, 854, 804 ,     ,>JQ906895 A/Sw/IL/A01201919/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1295, 846, 776 ,     ,>JQ906926 A/Sw/MN/A01201294/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1295, 852, 782 ,     ,>JQ906904 A/Sw/MN/A01047911/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1307, 845, 777 ,     ,>JQ906923 A/Sw/MN/A01134593/2010(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1319, 863, 795 ,     ,>JQ906896 A/Sw/IL/A01201950/2011(H1N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1319, 864, 790 ,     ,>JN162021 A/Sw/NC/A01049436/2011(H3N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1331, 878, 809 ,     ,>JN652522 A/Sw/IN/A01049744/2011(H3N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1331, 878, 809 ,     ,>JN652523 A/Sw/IN/A01049745/2011(H3N2) segment 6 
>6232v_11   ,>623*5      ,>62Fujr       ,  1343, 885, 811 ,     ,>JN652445 A/Sw/IN/A01049653/2011(H3N2) segment 6 
.
.
>832v_11    ,>813*5      ,>813*         ,   809, 648, 624 ,     ,>JQ914806 A/Sw/NC/A01049436/2011(H3N2) segment 8
>832v_11    ,>813*5      ,>813*         ,   809, 648, 624 ,     ,>JQ914811 A/Sw/IN/A01049745/2011(H3N2) segment 8
>832v_11    ,>813*5      ,>813*         ,   809, 648, 624 ,     ,>JQ914821 A/Sw/IN/A01049744/2011(H3N2) segment 8
>832v_11    ,>813*5      ,>813*         ,   821, 660, 636 ,     ,>JQ914816 A/Sw/IN/A01049653/2011(H3N2) segment 8
.

.         
                                               00000000000000000000000000000000111111111111111111111111111111111222 00000000000000000000000000000111111111111111111111111111111111112222222222222 00000000000000000000000011111111111111111111111111111111111111122 000000000000000001111111 00000000000000000000000000000000000000000000000000000111111111111111111111111 0000000000000000001111111111111 000000000000000 0000000000000000000000000000000 
                                               00111112223333334445566677788999000011122233333344444555666888999002 02233334444556666777778889999000111112223334445556667777788888890000011111122 01111223334555677778888900000112222224444555555666677788899999900 112233333455667992233335 00000111222233333334555555556666667777778888889999999000000112222333333444444 1122244677888899990000000011133 012334456677889 0111112222223333455555666667777 
                                               04011481342466692470135612868489168816703825578922667268159235235095 40236880068771456012390790148188024880665572672793470056615667850137801124601 70257562349126401582239722669070335790039001489345656819955679945 996855779416120161626884 45567145136900568895013467993467790035792468891123689245568040167345677257788 2511801228023445880012377946989 407260920769687 2555680114674589100116245672334 
                                               62547429950534696777004273643516143694666100616828170464798131026149 54639145859368526840524376224439200257366972134892841757824035101690202545951 52000511952651657482474503072700091295740368273889287254603272832 564317593667252802078275 61402113317836561569464987177205895880456045817840349970759709546096614856826 3602821706131341571620779821492 520438280983636 4169869356863340679343531364695 
-codon-position--------------------------------      2 222  1         2    1    2                                     1            1                11   1            1     1         2               2         1  12 2     12         1  2       1      1           1 1   1 2   1     1 21  1          1  1  1      11  1           1     2         1      1112 1     2 1    2       1  2 1 211 2 2 2              1 1211  1    2 2 1 12  2 2 1211  11111 
---Index---------------------------------------GTGGGGGAACGCAGCCACAACATCTACAAGGGTGGATGAGGAGGAAATGAACTAGACCGTTAGGTTTG AGGGCGAATAGAGGGTAAATGAATCCGTCCGGATTCCCCGCACATAGGCTTCAAAACTGTGCCTCCGGTCGCGAATA GGGTATCGATCACAGACGCCCGATAAAACACTGGAACCCTGCCATCAACAACTTATTCGAGGCTG TAGTTGGCCACACAGTCAGCCGCG GGGGAGCTCGTGCAGAAGCGATCAGCCTCAGCTAGGATCTCGAACATAATCACAGGCACGGGACTGGGTCCGATCGT CGCCATAGACAGGTGAACGTCTGCTCACTTC CGGATAAAAGTCAGA TGCTTGGGAAACCGTGATCCGAGCGAAAGAG 
   1 >Index                                    .................................................................... ............................................................................. ................................................................. ........................ ............................................................................. ............................... ............... ............................... 
   2 >A/Sw/IO/A01049478/2011/01/27             -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- .A.G.....A..... ------------------------------- 
  39 >A/Sw/MN/A01047604/2010(H1N2)             -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- .A.G.........A. ------------------------------- 
  41 >A/Sw/MN/226128/2010(H1N1)                -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- .A.G.........A. ------------------------------- 
   3 >A/Sw/IO/A01049525/2011/02/08             -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- ............... ------------------------------- 
   4 >A/Sw/MN/02948/2009/05/19                 -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ..A.......T....--------- ----------------------------------------------------------------------------- ------------------------------- --------------- ------------------------------- 
   5 >A/Sw/PA/62170-1/2010/10/25               .C.......A......GT..T...CG............G.........................CC.. ----------------------------------------------------------------------------- ..........T.....T...T....G........G...T...........G.............. ------------------------ ....GA......................................................A...........G.TAA ............................... --------------- ....................A.......... 
   6 >A/Sw/PA/62170-2/2010/10/25               .C.......A......GT..T...CG............G.........................CC.. ----------------------------------------------------------------------------- ..........T.....T...T....G........G...T...........G.............. ------------------------ ....GA......................................................A...........GAGAA ...........A..CG............... --------------- ....................A.......... 
   8 >A/Sw/PA/62170-4/2010/10/25               .C.......A......GT..T...CG......................................CC.. ----------------------------------------------------------------------------- ..........T.....T...T....G........G...T...........G.............. ------------------------ ....GA......................................................A...........G.... ...........A..CG............... --------------- ....................A.......... 
   7 >A/Sw/PA/62170-3/2010/10/25               .C.......A......GT..T...CG......................................CC.. ----------------------------------------------------------------------------- ..........T.....T...T....G........G...T...........G.............. ------------------------ ....GA...............................A......................A...........G.... ............................... --------------- ....................A.......... 
   9 >A/Sw/Quebec/1257777/2010/11/08           -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- .A.G.....------ ------------------------------- 
  10 >A/Sw/Quebec/1257774/2010/11/09           -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- ------------------------ ----------------------------------------------------------------------------- ------------------------------- .A.G..........- ------------------------------- 
  11 >A/Sw/IN/A01049091/2010/11/18             -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- .................G...... ----------------------------------------------------------------------------- ..T............................ --------------- ------------------------------- 
  12 >A/Sw/NC/A01049436/2011/01/19             -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- .............T.......... ----------------------------------------------------------------------------- ..T.....................G.....G --------------- ------------------------------- 
  13 >A/PA/09/2011/08/20                       .....A.G.............................A..AG..G...A..A...C.....GA..... ...A................AG...T..........................G........................ ..................A.........------------------------------------- .G....AT.G......A.AA..Y. .................................................CT....A...............A..... ....G.G..T......G.A..........-- ..............G ............................... 
  14 >A/PA/11/2011/08/25                       .....A.G............................-------------------------------- ------------------------------......................G........................ ..................A...........................G.......G....G..... .G..C.AT.G......A------- .............G......................................T........................ .......T.................A...-- ..............G ................G......T....... 
  15 >A/PA/10/2011/08/26                       -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- --------------..A------- ----------------------------------------------------------------------------- ------------------------------- .....---------- ................G......T....... 
  16 >A/PA/10b/2011                            -------------------------------------------------------------------- ----------------------------------------------------------------------------- ----------------------------------------------------------------- --------------..A------- ----------------------------------------------------------------------------- --------.................A...-- .....---------- ................G......T....... 
  17 >A/IN/08_a/2011/07/27                     ...A.A...............................A..AG......A..A...C.....GA..... ...A................AG.C.T..........................G........................ ..................A...........................G.......G....G..... .G..C.AT.G........AA.... .............G................................C.....T........................ ...Y...T....A............A..... ............G.G ................G.............. 
  18 >A/IN/08_b/2011/07/27                     ...A.A...............................A..AG......A..A...C.....GA....- ...A................AG.C.T..........................G........................ ..................A...........................G.......G....G..... .G..C.AT.G........A----- .............G................................C.....T........................ .......T....A............A...-- ............G.- ................G.............. 
  19 >A/IN/10/2011/10/22                       ..............TT...................G.A...G......A......C......A..... ....................AG...T.C........................G........................ ...C.......G................T.................G.A...C...C..G..... C..C.A..T........G...... ............................................................................. .................T...........-- AA.G..GG...A... ..T...............A...........A 
  20 >A/Sw/NY/A01104005/2011/09/13             ...............T.....................A...G......A......C......A..... ...........G.....G...G...T.............A..................................... .......A.....................................TG............G..... .....A..T........G...... .............G......................................T........................ .............C.......C....G.A.. AA.G..GG....... ...............A............... 
  21 >A/IO/07(f3)/2011/11/14(H3N2)             A............A.T.............A......CA...G......A......CA.....A....- G.A.....C..G.....G...G...T.........T...A...GA...............A.T..T........... ...C..T....G.....A...............A.........G..G.........C..G..... .....A..T..G..A..G.....- A.........C.T.......................................T.A...............T...... GA.T.C..G.T........CA..T...T.-- AAAG..GGGAC...- ..T......G..................... 
  22 >A/IO/08(m1)/2011/11/14(H3N2)             A............A.T.............A......CA...G......A......CA.....A....- G.A.....C..G.....G...G...T.........T...A...GA...............A.T..T........... ...C..T....G.....A...............A.........G..G.........C..G..... .....A..T..G..A..G....Y. A.........C.T.......................................T.A...............T...... GA.T.C..G.T........CA..T...T.C. AAAG..GGGAC.... ..T......G..................... 
  23 >A/IO/09(m2)/2011/11/14(H3N2)             A............A.T.............A......CA...G......A......CA.....A....- G.A.....C..G.....G...G...T.........T...A...GA...............A.T..T........... ...C..T....G.....A...............A.........G..G.........C..G..... .....A..T..G..A..G...... A.........C.T.......................................T.A...............T...... GA.T.C..G.T........CA..T...T.C. AAAG..GGGAC.... ..T......G..................... 
  24 >A/ME/06/2011/10/10                       .C.......A......GT..T...CG...............................T......CC.. G..........G.....G...G...T.........T...A....A...................T............ .......A.................................T....G............G..T.. .....A..T........G...... .....A....................................................................... .............C.......C....G.A-- AAAG..GGGAC.... ...............A............... 
  25 >A/WV/06/2011/11/21                       .C......GA......GT..T...CG..G....................G.......T.....ACC.. G..........G.....G...G...T.........T...A....A................................ ...C.......G..................................G.........CT.G..... .....A..T........G...... ..........C.T.......................................T.A...................... ------------------------------- AAAG..GGGAC.... ...............A............... 
  26 >A/Sw/IN/A01049653/2011,2011/03/08,H3N2   .................TC.T..TC.......................................C... .T..T.TG.CA..AACG.GC..G.T...TTAAGGCT.T..TGA..G.ATCCA.G.GTCTC.T.CT.A.C.A.AGGC. ..........T.......A......GG.......G...T.......................... ......A..G........A..... ....................................................T........................ ..T............................ --------------- ............................... 
  27 >A/Sw/IN/A01049744/2011,2011/03/23,H3N2   ............G....TC.T..TC................G.....C................C... .T..TATG.CA..AACG.GC..G.T...TTAAGGCT.T..TGA..G.ATCCA.G.GTCTC.T.CT.A.C.ATAGGCG ..........T.......A......G........G...T.....C.................... ............A..C.G...A.. ....................................................T................A....... ..T...................A........ --------------- .....................G......... 
  28 >A/Sw/IN/A01049745/2011,2011/03/23,H3N2   ......A.....G....TC.T..TC................G.....C................C.C. .T..TATG.CA..AACG.GC..G.T...TTAAGGCT.T..TGA..G.ATCYA.G.GTCTC.T.CT.A.C.ATAGGCG ..........T.......A......G........G...T.....C.................... ............A..C.G...A.. ....................................................T................A....... ..T...................A........ --------------- .....................G......... 
  29 >A/Sw/NC/A01049436/2011,2011/01/19,H3N2   .................TC.T..TC.......................................C... .T..T.TG.CA..AACG.GC..G.T...TTAAGGCTTT..TGA..G.ATCCA.G.GTCTC.T.CT.A.C.A.AGGC. ..........T.......A......G........G...T.......................... .............T.......... ....................................................T........................ ..T.....................G.....G --------------- .....................G......... 
  30 >A/WI/12/2010/11/02(H3N2)                 .CA......A.......T.TT...C........A.........A.........G..........C... .T..T.T..CA..AACG.G...G.T...TTAAGG.T.TT.T.A..G.ATCCA.G..T.TC.T.CT.AAC.A.AGGC. ..........T..............G........G...T.......G.................. ..A.......T......G...... ............................................................A................ ------------------------------- --------------- ............................... 
  31 >A/PA/14/2010/10/26(H1N1)                 .C.......A......GT..T...CG......................................CC.A .T..T.T..CA..AACG.G...G.T...TTAAGG.T.TT.T.A..G.ATCCA.G..T.TC.T.CT.AAC.A.AGGC. ..........T.....T...T....G........G...T...........G.............. ------------------------ ....GA......................................................A................ .............................C. --------------- ....................A.......... 
  32 >A/MN/19/2011/11/04                       .C......GAA.....GT..T...CG.......................G.......T......CC.. .T..T.T..CA..AACG.GC..G.T...TTAAGG.T.TT.T.A..G.ATCCA.G..T.TC.T.CT.AAC.A.AGGC. ..........T.........T....G..T.....G...T.......G.................. ------------------------ .................................................CT....A...............A..... ...TG.G..T.....GG.A..........C. --------------- ............................... 
  42 >A/Sw/MN/A01047613/2010(H1N1)             .CA......A.......T.TT...C........A.........A........CG..........C... .T..T.T..CA..AACG.G...G.T...TTAAGG.TTTT.T.A..G.ATCCA.G..T.TC.T.CT.AAC.A.AGGC. AAA.GC...CT.TC.G...T.AGAG...T.TCA.GGTTG.ATT........T.C...TA..ATC. ------------------------ .........................................................................AGAA ------------------------------- --------------- ............................... 
  33 >A/KA/13/2009/07/27(H3N2)                 .CA.A.A..A.T.....T..TGC.CGTGG..AA.A.......AA.GG...G.C.A...A.C..A...A .T..T.T..CA..AACG.G...G.T...T.AAGG.T.T..T.A..G.ATCCA.G..T.TC.T.CT.A.C.A.AGGC. AA.......CT........T..GA.G...C.C..G.T.A.ATT.....AG...C....A..A..A ------------------------ ...............................T...............G........A..A..GA............. ------------------------------- --------------- ............................... 
  38 >A/Sw/Ontario/33853/2005+M(Mex)           .CA.A.A..A.T.....T..TGC.CGTGG..AA.A...G...AA.GG.....C.A...A.C.....CA ....T.T...A.A.ACG.G...G.T.A.T.A..G.T.T.AT.AG...A.C.A.G..T....T..T...C....GG.. AAA.GC...CT.TC.G...T.AGAGG....TCA.G..TG.ATT..T...G.T.C....A..ATC. ------------------------ ..A....CTA........T....G.T...GATCT..GC....GGT...........A.T..TGAA............ ------------------------------- .A.G..G.G...... CA.CAAA...C...C....T....A..GAG. 
  34 >A/Michigan/09/2007/08/19(H1N2)           .CA.A.A..A.T.....T..TGC.CGTGG.....A.......AA..G...G.C.A...A.C......A ....T.T...A..AACG.G...G.T...T.A..G.T.T..T.A....A.C.A.G..T....T..T...CTA..GG.. AA.C.....CT....G...T..GAGG.....C..G...A.ATT......G...C...T...A.C. ------------------------ ...............................T.T...C....GG............A..A..GA............. ------------------------------- --------------- ...................T........... 
  35 >A/IL/09/2007(H1N1) (NA not)              .CA.A.A..A.T.....T..TGC.CGTGG.............AA......G.C.A...A.C...C..A ....T.T...A..AACG.G...G.T...T.A..G.T.T..T.A....A.C.A.G..T.......T...CTA..GG.. A........CT....G...T..GA.G.G.C.C..G...AAATT......G...C......TA..A ------------------------ .TAA...CTA.A..AGT.TAG.AGATAGAGATCTA.GCTCT.GGTG..G..G.CA.AGT..AGAAAAA....G.... ------------------------------- --------------- .....A.A..CTTA...C.T..A..G.GA.. 
  36 >A/Ohio/01/2007/08/17(H1N1) 36f           .CA.A.A..A.T.....T..TGC.CGTGG..........T..AA......G.C.A...A.C...C..A ....T.T...A..AACG.G...G.T...T.A..G.T.T..T.A....A.C.A.G..T.......T...CTA..GG.. A........CT...AG...T..GA.G.G.C.C..G...AAATT......G...C.A....TA..A ------------------------ .TAA...CTA.A..AGT.TAG.AGATAGAGATCTA.GCTCT.GGTG..G..G.CA.AGT..AGAAAAA....G.... ------------------------------- --------------- .....A.A..CTTA...C.T..A..G.GA.. 
  37 >A/Ohio/02/2007/08/17(H1N1)  10f          .CA.A.A..A.T.....T..TGC.CGTGG..........T..AA......G.C.A...A.C...C..A ....T.T...A..AACG.G...G.T...T.A..G.T.T..T.A....A.C.A.G..T.......T...CTA..GG.. A........CT...AG...T..GA.G.G.C.C..G...AAATT......G...C.A....TA..A ------------------------ .TAA...CTA.A..AGT.TAG.AGATAGAGATCTA.GCTCT.GGTG..G..G.CA.AGT..AGAAAAA....G.... ------------------------------- --------------- .....A.A..CTTA...C.T..A..G.GA.. 
  40 >A/Sw/IO/A01049210/2010(H3N2)             .CA.A.A..AA...T..T.GT.C.C.T.............A..A........C..........AC... ....T.T...A.AAACG.G...G.T...T.A..G.T.T..T.A....A.C.A.G..T.......T...C.A..GG.. ..........T.............GG........GG..A......................A... ------------------------ ...............................................G..............GA............. ------------------------------- --------------- CA.CAAA...C...C....T....A...AG. 
  43 >A/Sw/IL/A00857300/2011(H3N2)             ...............T..............A....G.A...G......A......C......A..... ....................AG...T.C........................G........................ ...C.......G..............C...................G.....C...C..G..... C..C.A..T........G...... .....................C....................................................... .................T............. AA.G..GG...A... ..T...............A.......G...A 
  44 >A/Sw/IL/A00857138a/2011(H3N2)            ...............T..............A....G.A...G......A......C......A..... ....................AG...T.C........................G........................ ...C.......G..............C...................G.....C...C..G..... C..C.A..T........G...... .....................C....................................................... .................T............. AA.G..GG...A... ..T...............A.......G...A 
  45 >A/Sw/IL/A00857138b/2011(H3N2)            ...............T..............A....G.A...G......A......C......A..... ....................AG...T.C........................G........................ ...C.......G..............C...................G.....C...C..G..... C..C.A..T........G...... .....................C....................................................... .................T............. AA.G..GG...A... ..T...............A.......G...A 
  48 >A/Sw/IO/A01202640/2011,2011/09/30,H3N2   ...............T..............A....G.A...G......A......C......A..... ....................AG...T.C........................G........................ ...C.......G..............C...................G.....C...C..G..... C..C.A..T........G...... .....................C....................................................... .................T............. AA.G..GG...A... ..T...............A.......G...A 
  46 >A/Sw/IL/A00857304b/2012(H3N2)            .....A...............................A..AG..G...A..A...C...C.GA..... ....................AG...TA................G..A.....G.G...................... ........G.........A...........................GT......G....G..... .....A..T........G..T..A ......T......G...A.................A.....T..........T...............A........ .......T.................A..... AAAGCGGGGAC.... ........G.......G.............. 
  47 >A/Sw/IL/A00857304a/2012(H3N2)            .....A...............................A..AG..G...A..A...C...C.GA..... ....................AG...TA................G..A.....G.G...................... ........G.........A...........................GT......G....G..... .....A..T........G..T..A ......T......G...A.................A.....T..........T...............A........ .......T.................A..... AAAGCGGGGAC.... ........G.......G.............. 
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
---Index---------------------------------------GTGGGGGAACGCAGCCACAACATCTACAAGGGTGGATGAGGAGGAAATGAACTAGACCGTTAGGTTTG AGGGCGAATAGAGGGTAAATGAATCCGTCCGGATTCCCCGCACATAGGCTTCAAAACTGTGCCTCCGGTCGCGAATA GGGTATCGATCACAGACGCCCGATAAAACACTGGAACCCTGCCATCAACAACTTATTCGAGGCTG TAGTTGGCCACACAGTCAGCCGCG GGGGAGCTCGTGCAGAAGCGATCAGCCTCAGCTAGGATCTCGAACATAATCACAGGCACGGGACTGGGTCCGATCGT CGCCATAGACAGGTGAACGTCTGCTCACTTC CGGATAAAAGTCAGA TGCTTGGGAAACCGTGATCCGAGCGAAAGAG 
-codon-position--------------------------------      2 222  1         2    1    2                                     1            1                11   1            1     1         2               2         1  12 2     12         1  2       1      1           1 1   1 2   1     1 21  1          1  1  1      11  1           1     2         1      1112 1     2 1    2       1  2 1 211 2 2 2              1 1211  1    2 2 1 12  2 2 1211  11111 
                                               00000000000000000000000000000000111111111111111111111111111111111222 00000000000000000000000000000111111111111111111111111111111111112222222222222 00000000000000000000000011111111111111111111111111111111111111122 000000000000000001111111 00000000000000000000000000000000000000000000000000000111111111111111111111111 0000000000000000001111111111111 000000000000000 0000000000000000000000000000000 
                                               00111112223333334445566677788999000011122233333344444555666888999002 02233334444556666777778889999000111112223334445556667777788888890000011111122 01111223334555677778888900000112222224444555555666677788899999900 112233333455667992233335 00000111222233333334555555556666667777778888889999999000000112222333333444444 1122244677888899990000000011133 012334456677889 0111112222223333455555666667777 
                                               04011481342466692470135612868489168816703825578922667268159235235095 40236880068771456012390790148188024880665572672793470056615667850137801124601 70257562349126401582239722669070335790039001489345656819955679945 996855779416120161626884 45567145136900568895013467993467790035792468891123689245568040167345677257788 2511801228023445880012377946989 407260920769687 2555680114674589100116245672334 
                                               62547429950534696777004273643516143694666100616828170464798131026149 54639145859368526840524376224439200257366972134892841757824035101690202545951 52000511952651657482474503072700091295740368273889287254603272832 564317593667252802078275 61402113317836561569464987177205895880456045817840349970759709546096614856826 3602821706131341571620779821492 520438280983636 4169869356863340679343531364695 
                                                                                                                                                                                                                                                                                                                                                                                                                                                           

                                      .