Rhiza Labs FluTracker Forum

The US Air Force has released a series of H3B1 sequences (1200 BP at Genbank) from Department of Defense (DoD) personal in the US and around the world. These sequences, like the 2012 CDC sequences in the US, largely fall into two clade, A/Victoria/361/2011-like (with S198A and V223I) and A/Brisbane-299-like (with A199S).

Included is an exact match (A/Nevada/AF2838/2012) and closely related (A/Alaska/AF2838/2012) sequence to the Maryland death cluster (all have A1002T).

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A1002T at GISAID

EPI363019 A/California/17/2012 (A/H3N2) segment 4 (HA) 27.0 7.887022e+00 14/14 (100%)
EPI359623 A/Maryland/05/2012 (A/H3N2) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI359571 A/Maryland/09/2012 (A/H3N2) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI359569 A/Maryland/08/2012 (A/H3N2) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI359564 A/Maryland/06/2012 (A/H3N2) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI359098 A/Maryland/04/2012 (A/H3N2) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI352394 A/equine/Heilongjiang/1/2011 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI352393 A/equine/Heilongjiang/1/2010 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI351724 A/equine/Ittlingen/1/2011 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI347151 A/equine/Kildare/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI347150 A/equine/Meath/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI347149 A/equine/Donegal/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI339468 A/equine/Bokel/1/2011 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI324389 A/equine/Viersen/2010 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI324388 A/equine/Hamburg/2010 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI324387 A/equine/Waldalgesheim/2010 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI314123 A/equine/Yokohama/aq13/2010 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI314112 A/equine/Otar/764/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI288543 A/equine/Spain/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI288541 A/equine/Spain/1/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI283517 A/equine/Yorkshire/3/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI273064 A/equine/Perthshire/3/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272768 A/equine/Perthshire/2/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272767 A/equine/Perthshire/1/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272762 A/equine/Northumberland/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272761 A/equine/Lothian/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272760 A/equine/Leicestershire/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272759 A/equine/Lanarkshire/6/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272758 A/equine/Lanarkshire/5/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272757 A/equine/Lanarkshire/3/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272756 A/equine/Lanarkshire/2/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272755 A/equine/Lanarkshire/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272754 A/equine/Hawick/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272753 A/equine/Wildeshausen/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272752 A/equine/Aboyne/2/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272751 A/equine/Aboyne/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI272750 A/equine/Worcestershire/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI265942 A/equine/Katra-Jammu/7/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI255570 A/equine/Mysore/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI255566 A/equine/Ahmedabad/1/2009 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI250068 A/equine/Almaty/26/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI248552 A/equine/Uzin-Agash/02/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI243547 A/equine/Huabei/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186934 A/equine/Xinjiang/5/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186926 A/equine/Xinjiang/4/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186918 A/equine/Xinjiang/3/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186910 A/equine/Xinjiang/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186902 A/equine/Xinjiang/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186886 A/equine/Inner Mongolia/8/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186878 A/equine/Liaoning/9/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186870 A/equine/Heilongjiang/10/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186862 A/equine/Hubei/6/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI186854 A/equine/Gansu/7/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177894 A/equine/Strathaven/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177893 A/equine/Southampton/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177892 A/equine/Solihull/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177891 A/equine/Solihull/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177890 A/equine/Maidstone/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177889 A/equine/Maidstone/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177888 A/equine/Horsham/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177887 A/equine/Cheshire/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177886 A/equine/Berkshire/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177874 A/equine/Newmarket/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177873 A/equine/Richmond/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177872 A/equine/Richmond/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177871 A/equine/Southampton/1/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177870 A/equine/Cheshire/3/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI177869 A/equine/Cheshire/2/2007 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI167059 A/northern pintail/California/HKWF151/2007 (A/H6N1) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)
EPI153113 A/equine/Mongolia/1/2008 (A/H3N8) segment 4 (HA) 27.0 7.778901e+00 14/14 (100%)

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A1002T at Genbank

CY112168.1 Influenza A virus (A/Nevada/AF2840/2012(H3N2)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
CY112166.1 Influenza A virus (A/Alaska/AF2838/2012(H3N2)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
CY107012.1 Influenza A virus (A/equine/Ittlingen/1/2011(H3N8)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
JQ265983.1 Influenza A virus (A/equine/Heilongjiang/1/2011(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
JQ265982.1 Influenza A virus (A/equine/Heilongjiang/1/2010(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
JN222936.1 Influenza A virus (A/equine/Kildare/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
JN222935.1 Influenza A virus (A/equine/Meath/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
JN222934.1 Influenza A virus (A/equine/Donegal/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
CY100070.1 Influenza A virus (A/equine/Bokel/1/2011(H3N8)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
CY092815.1 Influenza A virus (A/equine/Viersen/2010(H3N8)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
CY092814.1 Influenza A virus (A/equine/Hamburg/2010(H3N8)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
CY092813.1 Influenza A virus (A/equine/Waldalgesheim/2010(H3N8)) hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
JF683499.1 Influenza A virus (A/equine/Otar/764/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
AB618504.1 Influenza A virus (A/equine/Yokohama/aq13/2010(H3N8)) viral cRNA, segment 4, complete sequence 32.2 32.2 100% 16 100%
CY075851.1 Influenza A virus (A/equine/Spain/1/2007(H3N8)) segment 4 sequence 32.2 32.2 100% 16 100%
CY075849.1 Influenza A virus (A/equine/Spain/1/2009(H3N8)) segment 4 sequence 32.2 32.2 100% 16 100%
CY054288.1 Influenza A virus (A/equine/Yorkshire/3/2009(H3N8)) segment 4 sequence 32.2 32.2 100% 16 100%
GU045289.1 Influenza A virus (A/equine/Perthshire/3/2009(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045288.1 Influenza A virus (A/equine/Perthshire/2/2009(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045287.1 Influenza A virus (A/equine/Perthshire/1/2009(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045282.1 Influenza A virus (A/equine/Northumberland/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045281.1 Influenza A virus (A/equine/Lothian/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045280.1 Influenza A virus (A/equine/Leicestershire/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045279.1 Influenza A virus (A/equine/Lanarkshire/6/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045278.1 Influenza A virus (A/equine/Lanarkshire/5/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045277.1 Influenza A virus (A/equine/Lanarkshire/3/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045276.1 Influenza A virus (A/equine/Lanarkshire/2/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045275.1 Influenza A virus (A/equine/Lanarkshire/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045274.1 Influenza A virus (A/equine/Hawick/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045273.1 Influenza A virus (A/equine/Wildeshausen/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045272.1 Influenza A virus (A/equine/Aboyne/2/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045271.1 Influenza A virus (A/equine/Aboyne/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU045270.1 Influenza A virus (A/equine/Worcestershire/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ888344.1 Influenza A virus (A/equine/Katra-Jammu/6/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
GU396102.1 Influenza A virus (A/equine/Ahmedabad/1/2009(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
GU396101.1 Influenza A virus (A/equine/Mysore/1/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
GU953266.1 Influenza A virus (A/equine/Almaty/26/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
GU571144.1 Influenza A virus (A/equine/Huabei/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794495.1 Influenza A virus (A/equine/Gansu/7/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794503.1 Influenza A virus (A/equine/Hubei/6/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794511.1 Influenza A virus (A/equine/Heilongjiang/10/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794519.1 Influenza A virus (A/equine/Liaoning/9/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794527.1 Influenza A virus (A/equine/Inner Mongolia/8/2008(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794543.1 Influenza A virus (A/equine/Xinjiang/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794551.1 Influenza A virus (A/equine/Xinjiang/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794559.1 Influenza A virus (A/equine/Xinjiang/3/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794567.1 Influenza A virus (A/equine/Xinjiang/4/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
EU794575.1 Influenza A virus (A/donkey/Xinjiang/5/2007(H3N8)) segment 4 hemagglutinin (HA) gene, complete cds 32.2 32.2 100% 16 100%
FJ195417.1 Influenza A virus (A/equine/Strathaven/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195416.1 Influenza A virus (A/equine/Southampton/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195415.1 Influenza A virus (A/equine/Solihull/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195414.1 Influenza A virus (A/equine/Solihull/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195413.1 Influenza A virus (A/equine/Maidstone/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195412.1 Influenza A virus (A/equine/Maidstone/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195411.1 Influenza A virus (A/equine/Horsham/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195410.1 Influenza A virus (A/equine/Cheshire/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195409.1 Influenza A virus (A/equine/Berkshire/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195397.1 Influenza A virus (A/equine/Newmarket/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195396.1 Influenza A virus (A/equine/Richmond/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195395.1 Influenza A virus (A/equine/Richmond/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195394.1 Influenza A virus (A/equine/Southampton/1/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195393.1 Influenza A virus (A/equine/Cheshire/3/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%
FJ195392.1 Influenza A virus (A/equine/Cheshire/2/2007(H3N8)) segment 4 hemagglutinin (HA) gene, partial cds 32.2 32.2 100% 16 100%

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A/Nevada/AF2840/2012 matches at GISAID

EPI363019 A/California/17/2012 (A/H3N2) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI359623 A/Maryland/05/2012 (A/H3N2) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI359569 A/Maryland/08/2012 (A/H3N2) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI359564 A/Maryland/06/2012 (A/H3N2) segment 4 (HA) 2217.1 0.000000e+00 1200/1200 (100%)
EPI359850 A/Sweden/11/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI359571 A/Maryland/09/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI359211 A/Umea/7/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI359209 A/Umea/6/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI359098 A/Maryland/04/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI359019 A/Stockholm/12-00979/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI357044 A/Stockholm/6/20112 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI354203 A/Netherlands/001/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353940 A/Stockholm/38/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353937 B/Stockholm/38/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353603 A/Malmoe/1/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353557 A/Stockholm/3/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353473 A/Texas/06/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI352765 A/Porto/EuroEva69/2012 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351725 A/Stockholm/44/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351627 A/Stockholm/41/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351557 A/Stockholm/45/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351413 A/Uppsala/10/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351292 A/Texas/14/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351282 A/Florida/42/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI351216 A/Uppsala/9/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI347594 A/Vaxjo/1/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI347591 A/Stockholm/31/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI346408 A/Stockholm/28/2011 (A/H3N2) segment 4 (HA) 2211.6 0.000000e+00 1199/1200 (99%)
EPI353448 A/Florida/02/2012 (A/H3N2) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI352683 A/Netherlands/702/2011 (A/H3N2) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI351632 A/Uppsala/11/2011 (A/H3N2) segment 4 (HA) 2207.9 0.000000e+00 1198/1200 (99%)
EPI361046 A/Boston/DOA15/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI359843 A/Sweden/2/2012 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI359476 A/Boston/DOA75/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI358025 A/New Jersey/01/2012 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI357008 A/Stockholm/11/2012 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI354199 A/Netherlands/710/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353566 A/Vaxjo/2/2012 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI353563 A/Vaxjo/1/2012 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI352218 A/New York/20/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI351644 A/Stockholm/42/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI347509 A/Massachusetts/11/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI342205 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI342203 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI342197 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI342195 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI340936 A/Paraguay/210/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI335948 A/Santiago/18454/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI335931 A/Paraguay/210/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI335923 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI335861 A/Argentina/676/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI334570 A/Mexico City/WRAIR3569N/2010(H3N2) (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI331259 A/Washington/12/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325977 A/Mexico City/WRAIR3580T/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325969 A/Mexico City/WRAIR3579T/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325961 A/Mexico City/WRAIR3579N/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325953 A/Mexico City/WRAIR3578T/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325945 A/Mexico City/WRAIR3578N/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325937 A/Mexico City/WRAIR3577T/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325929 A/Mexico City/WRAIR3571N/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325905 A/Mexico City/WRAIR3569T/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325889 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI325881 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI320341 A/California/NHRC0002/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI319740 A/Minnesota/09/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI319128 A/Illinois/NHRC0002/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI316114 A/Mississippi/03/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI316013 A/Alabama/01/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI309464 A/Wyoming/04/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI309455 A/Colorado/01/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI309438 A/Guadeloupe/129/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI309431 A/Texas/26/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI309405 A/Costa Rica/0096/2001 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI308982 A/Texas/AF2730/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI308964 A/Colorado/AF2701/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI308962 A/Arizona/AF2698/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI308954 A/Ohio/AF2718/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI302319 A/Iowa/12/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI302304 A/Iowa/11/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI302268 A/British Columbia/RV29/2011 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301772 A/Washington/02/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301759 A/Oklahoma/02/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301753 A/North Carolina/13/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301737 A/Arkansas/03/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301125 A/Nebraska/03/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301121 A/Arkansas/05/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301111 A/California/27/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301101 A/Texas/12/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301018 A/Florida/27/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI301010 A/Alabama/07/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI295199 A/Belize/3715/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI295071 A/Mississippi/05/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI291556 A/Costa Rica/6696/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI287082 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI279988 A/Mexico/4056/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI279979 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI279967 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI279961 A/Florida/11/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI278766 A/Dominican Republic/4319/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)
EPI278760 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 2206.0 0.000000e+00 1198/1200 (99%)

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LOCUS CY112168 1200 bp cRNA linear VRL 11-APR-2012
DEFINITION Influenza A virus (A/Nevada/AF2840/2012(H3N2)) hemagglutinin (HA)
gene, partial cds.
ACCESSION CY112168
VERSION CY112168.1 GI:383931810
KEYWORDS .
SOURCE Influenza A virus (A/Nevada/AF2840/2012(H3N2))
ORGANISM Influenza A virus (A/Nevada/AF2840/2012(H3N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Connors,B.C., Jones,S.L., Adams,J.E., Bisaha,S.A., Canas,L.C.,
Cormier,T.L., Cosmer,K.W., Davis,M.G., Leaver,M.M., Okoro,B.N.,
Yohannes,R.A., Abshire,J.P., LLoyd,L.V., Schlorman,C.A.,
Tastad,K.J., Smith,J.P., Macintosh,V.H., Fumia,K.F., Macias,E.A.,
Noe,J.C. and Sjoberg,P.A.
TITLE 2011-2012 Influenza Surveillance among DoD Populations
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1200)
AUTHORS Connors,B.C., Jones,S.L., Adams,J.E., Bisaha,S.A., Canas,L.C.,
Cormier,T.L., Cosmer,K.W., Davis,M.G., Leaver,M.M., Okoro,B.N.,
Yohannes,R.A., Abshire,J.P., LLoyd,L.V., Schlorman,C.A.,
Tastad,K.J., Smith,J.P., Macintosh,V.H., Fumia,K.F., Macias,E.A.,
Noe,J.C. and Sjoberg,P.A.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) USAFSAM/PHE, United States Air Force, 2510
5th Street, WPAFB, OH 45433, USA
FEATURES Location/Qualifiers
source 1..1200
/organism="Influenza A virus (A/Nevada/AF2840/2012(H3N2))"
/mol_type="viral cRNA"
/strain="A/Nevada/AF2840/2012"
/serotype="H3N2"
/isolation_source="Nasal Wash"
/host="human; gender F; age 46"
/db_xref="taxon:1168935"
/segment="4"
/lab_host="PMK1 passage(s)"
/country="USA: Nevada"
/collection_date="05-Mar-2012"
gene 1..>1200
/gene="HA"
CDS 1..>1200
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="AFH57067.1"
/db_xref="GI:383931811"
/translation="MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKT
ITNDQIEVTNATELVQSSSTGEICNSPHQILDGENCTLIDALLGDPQCDGFQNKKWDL
FVERSKAHSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN
NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQAAGRI
TVSTKRSQQAVIPNIGSRPRVRNIPSRVSIYWTIVKPGDILLINSTGNLIAPRGYFKI
RSGKSSIMRSDAPIGKCNSACITPNGSIPNDKPFQNVNRITYGACPRYVKQNTLKLAT
GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRGQAADLKSTQAAIDQ
INGKLNRL"
sig_peptide 1..48
/gene="HA"
mat_peptide 49..1035
/gene="HA"
/product="HA1"
mat_peptide 1036..>1200
/gene="HA"
/product="HA2"
ORIGIN
1 atgaagacta tcattgcttt gagctacatt ctatgtctgg ttttcgctca aaaacttcct
61 ggaaatgaca acagcacggc aacgctgtgc cttgggcacc atgcagtgcc aaacggaacg
121 atagtgaaaa caatcacgaa tgaccaaatt gaagttacta atgctactga gctggttcag
181 agttcctcaa caggtgaaat atgcaacagt cctcatcaga tccttgatgg agaaaactgc
241 acactaatag atgctctatt gggagaccct cagtgtgatg gcttccaaaa caagaaatgg
301 gacctttttg ttgaacgaag caaagcccac agcaactgtt acccctatga tgtgccggat
361 tatgcctccc ttaggtcact agttgcctca tccggcacac tggagtttaa caatgaaagc
421 ttcaattgga ctggagtcac tcaaaacgga acaagctctg cttgcataag gagatctaat
481 aatagtttct ttagtagatt gaattggttg acccacttaa acttcaaata cccagcattg
541 aacgtgacta tgccaaacaa tgaacaattt gacaaattgt acatttgggg ggttcaccac
601 ccgggtacgg acaaggacca aatcttcctg tatgctcaag cagcaggaag aatcacagta
661 tctaccaaaa gaagccaaca agctgtaatt ccgaatatcg gatctagacc cagagtaagg
721 aatatcccta gcagagtaag catctattgg acaatagtaa aaccgggaga catacttttg
781 attaacagca cagggaatct aattgctcct aggggttact tcaaaatacg aagtgggaaa
841 agctcaataa tgagatcaga tgcacccatt ggcaaatgca attctgcatg catcactcca
901 aatggaagca ttcccaatga caaaccattc caaaatgtaa acaggatcac atacggggcc
961 tgtcccagat atgttaagca aaacactctg aaattggcaa ctggaatgag aaatgtacca
1021 gagaaacaaa ctagaggcat atttggcgca atagctggtt tcatagaaaa tggttgggag
1081 ggaatggtgg atggttggta cggtttcagg catcaaaatt ctgagggaag gggacaagca
1141 gcagatctca aaagcactca agcagcaatc gatcaaatca atgggaagct gaatagattg

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That's a lot more equine samples than I remember seeing on these lists ....

This one marker is common in equine (H3N8).

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