Rhiza Labs FluTracker Forum

A/swine/SD/5/2011/02/25(H1N2)
has segment 7 from Mx
segment 6 from A/Sw/Ontario/33853/2005(H3N2)
segment 4 : human New/Caledonia/1999

A/swine/SD/6/2011/02/25(H1N2)
has segment 7 from Mx
segment 6 from A/Sw/Ontario/33853/2005(H3N2)
segment 4 : human New/Caledonia/1999

A/swine/SD/7/2011/02/25(H1N1)
has segment 7 from Mx
segment 6 from classical swine
segment 4 : from classical swine

------------------------------------------------

mexflu segments going into swine:

-----+--:HK/201/2010
+++++-++:THA/CU-SA43/2010
+++---++:IN/240218
-------+:Korea/4779
+++++-++:Korea/4940
++++--++:Korea/4941
+++++-++:THA/CU-SA412
+++++-++:THA/CU-SA432
+++-+-++:England/1382
-++---+-:NC/239108
+++-+-++:Argentina/CIP051-StaFeN2
------++:Korea/5008
+-+-+-++:MN/239106
+++++-++:Italy/116114
--+-+-++:MN/226128
----+-++:NC/226124
----+-++:NC/226125
----+-++:NC/226126
...-.-+.:SD/2
...-.-+.:SD/3
+++-+-.+:MN/A01047604
...-..++:Quebec/1259260
+++-+-++:Quebec/1265553
...-.-+.:SD/4
...-.-+.:SD/5
...-.-+.:SD/6
...-.-+.:SD/7
.
.

.
.


+:pH1N1
-:other
.: not available



H1-HA mutation table of swine sequences from genbank since 2001
(one 3bp insertion and one 6bp insertion removed)
only full HAs, ~600 since 2001

Code:

coming soon ... (being prepared)

files:
sw10b
sw11b
thai3
swh1c
swav21
swh1ce
swh1ca
swea3
1976c
swhk77b
sw77us
sw00hk
swgee
swth3

_________________
no patents on genes, publish the GISAID sequences !

2010 H1N2 South Dakota swine reasoortants were described earlier

http://www.recombinomics.com/News/02111 ... tants.html

_________________
www.twitter.com/hniman

Top 100 HA matches for SD/6

CY086928.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) hemagglutinin (HA) gene, complete cds 3263 3263 100% 0.0 99%
HQ424897.1 Influenza A virus (A/swine/Oklahoma/44837-5/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3247 3247 100% 0.0 99%
CY045623.1 Influenza A virus (A/swine/Oklahoma/011289-9/2008(H1N2)) segment 4 sequence 3223 3223 100% 0.0 98%
CY045607.1 Influenza A virus (A/swine/Oklahoma/010710-9/2008(H1N2)) segment 4 sequence 3223 3223 100% 0.0 98%
CY045703.1 Influenza A virus (A/swine/Oklahoma/020736-1/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045679.1 Influenza A virus (A/swine/Oklahoma/020734-2/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045663.1 Influenza A virus (A/swine/Oklahoma/016179-8/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045655.1 Influenza A virus (A/swine/Oklahoma/011521-4/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045639.1 Influenza A virus (A/swine/Oklahoma/011289-8/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045631.1 Influenza A virus (A/swine/Oklahoma/011289-10/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045615.1 Influenza A virus (A/swine/Oklahoma/010710-8/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045599.1 Influenza A virus (A/swine/Oklahoma/010226-17/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045591.1 Influenza A virus (A/swine/Oklahoma/010226-16/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045519.1 Influenza A virus (A/swine/Oklahoma/032726/2008(H1N2)) segment 4 sequence 3215 3215 100% 0.0 98%
CY045647.1 Influenza A virus (A/swine/Oklahoma/011521-5/2008(H1N2)) segment 4 sequence 3207 3207 100% 0.0 98%
CY045695.1 Influenza A virus (A/swine/Oklahoma/020736-2/2008(H1N2)) segment 4 sequence 3200 3200 100% 0.0 98%
CY045687.1 Influenza A virus (A/swine/Oklahoma/020734-3/2008(H1N2)) segment 4 sequence 3200 3200 100% 0.0 98%
CY045535.1 Influenza A virus (A/swine/Texas/050625/2008(H1N2)) segment 4 sequence 3200 3200 100% 0.0 98%
CY045527.1 Influenza A virus (A/swine/Texas/050593/2008(H1N2)) segment 4 sequence 3200 3200 100% 0.0 98%
HM570049.1 Influenza A virus (A/swine/Minnesota/03023/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3184 3184 100% 0.0 98%
CY045711.1 Influenza A virus (A/swine/Oklahoma/042169/2008(H1N2)) segment 4 sequence 3184 3184 100% 0.0 98%
CY045671.1 Influenza A virus (A/swine/Oklahoma/016179-9/2008(H1N2)) segment 4 sequence 3184 3184 100% 0.0 98%
CY045543.1 Influenza A virus (A/swine/Oklahoma/053259/2008(H1N2)) segment 4 sequence 3168 3168 100% 0.0 98%
HM778117.1 Influenza A virus (A/swine/Minnesota/03043/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3144 3144 100% 0.0 98%
JF312053.1 Influenza A virus (A/swine/Minnesota/A01047604/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3136 3136 100% 0.0 98%
CY081566.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) hemagglutinin (HA) gene, partial cds 3104 3104 99% 0.0 98%
CY078421.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 4 sequence 3104 3104 99% 0.0 98%
CY078424.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 4 sequence 3096 3096 99% 0.0 98%
HQ424888.1 Influenza A virus (A/swine/North Carolina/44837-2/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2999 2999 99% 0.0 97%
HM193850.1 Influenza A virus (A/swine/Iowa/02998/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2977 2977 99% 0.0 97%
GU480919.1 Influenza A virus (A/swine/SD/31813/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2974 2974 99% 0.0 97%
HM461770.1 Influenza A virus (A/swine/Iowa/02039/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2940 2940 99% 0.0 96%
HM570050.1 Influenza A virus (A/swine/Minnesota/03024/2010(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2934 2934 92% 0.0 98%
CY002352.1 Influenza A virus (A/New York/209/2003(H1N2)) segment 4, complete sequence 2874 2874 100% 0.0 96%
EU097962.1 Influenza A virus (A/Denmark/50/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2866 2866 100% 0.0 96%
EU097961.1 Influenza A virus (A/Denmark/12/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2866 2866 100% 0.0 96%
CY017115.1 Influenza A virus (A/New York/C1/2003(H1N2)) segment 4, complete sequence 2866 2866 100% 0.0 96%
CY002992.1 Influenza A virus (A/New York/226/2003(H1N2)) segment 4, complete sequence 2866 2866 100% 0.0 96%
CY002656.1 Influenza A virus (A/New York/294/2003(H1N2)) segment 4, complete sequence 2866 2866 100% 0.0 96%
EU097960.1 Influenza A virus (A/Denmark/56/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2859 2859 100% 0.0 96%
CY010076.1 Influenza A virus (A/New York/229/2003(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
CY003761.1 Influenza A virus (A/New York/400/2003(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
CY003368.1 Influenza A virus (A/New York/217/2002(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
CY002632.1 Influenza A virus (A/New York/231/2003(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
CY002360.1 Influenza A virus (A/New York/300/2003(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
CY006403.1 Influenza A virus (A/New York/490/2003(H1N2)) segment 4, complete sequence 2859 2859 100% 0.0 96%
FJ638314.1 Influenza A virus (A/swine/IL/07003243/2007(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2851 2851 100% 0.0 96%
CY016324.1 Influenza A virus (A/Michigan/2/2003(H1N2)) segment 4 sequence 2851 2851 100% 0.0 96%
CY006107.1 Influenza A virus (A/New York/219/2003(H1N2)) segment 4, complete sequence 2851 2851 100% 0.0 96%
CY003672.1 Influenza A virus (A/New York/482/2003(H1N2)) segment 4, complete sequence 2851 2851 100% 0.0 96%
CY006867.1 Influenza A virus (A/New York/211/2003(H1N2)) segment 4, complete sequence 2851 2851 100% 0.0 96%
CY006411.1 Influenza A virus (A/New York/492/2003(H1N2)) segment 4, complete sequence 2851 2851 100% 0.0 96%
CY006747.1 Influenza A virus (A/New York/225/2003(H1N2)) segment 4, complete sequence 2843 2843 100% 0.0 96%
CY006187.1 Influenza A virus (A/New York/491/2003(H1N2)) segment 4, complete sequence 2837 2837 99% 0.0 96%
CY041903.1 Influenza A virus (A/swine/Minnesota/SG-00239/2007(H1N2)) segment 4 sequence 2835 2835 100% 0.0 96%
FJ231791.1 Influenza A virus (A/Sachsen/678/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2835 2835 100% 0.0 96%
FJ231788.1 Influenza A virus (A/Baden-Wuerttemberg/20/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2835 2835 100% 0.0 96%
CY002664.1 Influenza A virus (A/New York/297/2003(H1N2)) segment 4, complete sequence 2835 2835 100% 0.0 96%
FJ231790.1 Influenza A virus (A/Rheinland-Pfalz/34/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2827 2827 100% 0.0 95%
FJ231789.1 Influenza A virus (A/Baden-Wuerttemberg/129/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2827 2827 100% 0.0 95%
CY002152.1 Influenza A virus (A/New York/296/2003(H1N2)) segment 4, complete sequence 2827 2827 100% 0.0 95%
CY016326.1 Influenza A virus (A/Michigan/3/2003(H1N2)) segment 4 sequence 2823 2823 100% 0.0 95%
DQ280227.1 Influenza A virus (A/swine/Ontario/52156/03(H1N2)) hemagglutinin (HA) gene, complete cds 2811 2811 100% 0.0 95%
CY001680.2 Influenza A virus (A/New York/78/2002(H1N2)) segment 4, complete sequence 2803 2803 100% 0.0 95%
CY003769.1 Influenza A virus (A/New York/417/2002(H1N2)) segment 4, complete sequence 2795 2795 100% 0.0 95%
CY006395.1 Influenza A virus (A/New York/487/2003(H1N2)) segment 4, complete sequence 2795 2795 100% 0.0 95%
CY003696.1 Influenza A virus (A/New York/489/2003(H1N2)) segment 4, complete sequence 2787 2787 100% 0.0 95%
FJ231787.1 Influenza A virus (A/Sachsen/11.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2779 2779 100% 0.0 95%
FJ231786.1 Influenza A virus (A/Sachsen/2005.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2779 2779 100% 0.0 95%
DQ280212.1 Influenza A virus (A/swine/Ontario/55383/04(H1N2)) hemagglutinin (HA) gene, complete cds 2779 2779 100% 0.0 95%
CY006387.1 Influenza A virus (A/New York/481/2003(H1N2)) segment 4, complete sequence 2779 2779 100% 0.0 95%
DQ280236.1 Influenza A virus (A/swine/Ontario/48235/04(H1N2)) hemagglutinin (HA) gene, complete cds 2771 2771 100% 0.0 95%
EU097959.1 Influenza A virus (A/Denmark/86/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2755 2755 100% 0.0 95%
EU097936.1 Influenza A virus (A/Denmark/11/2001(H1N1)) hemagglutinin (HA) gene, complete cds 2724 2724 100% 0.0 95%
CY025034.1 Influenza A virus (A/Auckland/597/2000(H1N1)) segment 4, complete sequence 2720 2720 100% 0.0 95%
HM461802.1 Influenza A virus (A/swine/Minnesota/02011/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2716 2716 99% 0.0 95%
CY040138.1 Influenza A virus (A/Taiwan/5072/1999(H1N1)) segment 4, complete sequence 2716 2716 100% 0.0 95%
CY022509.1 Influenza A virus (A/Auckland/590/2000(H1N1)) segment 4, complete sequence 2716 2716 100% 0.0 95%
CY016643.1 Influenza A virus (A/New South Wales/18/1999(H1N1)) segment 4, complete sequence 2716 2716 100% 0.0 95%
CY011584.1 Influenza A virus (A/Dunedin/2/2000(H1N1)) segment 4, complete sequence 2716 2716 100% 0.0 95%
HM461850.1 Influenza A virus (A/swine/Texas/01976/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2708 2708 99% 0.0 95%
CY033622.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
EU097934.1 Influenza A virus (A/Denmark/3/2001(H1N1)) hemagglutinin (HA) gene, complete cds 2708 2708 100% 0.0 95%
EU103824.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2708 2708 100% 0.0 95%
CY022485.1 Influenza A virus (A/Auckland/586/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY022149.1 Influenza A virus (A/Auckland/579/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY021629.1 Influenza A virus (A/Wellington/4/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY017123.1 Influenza A virus (A/New South Wales/24/1999(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY016971.1 Influenza A virus (A/Wellington/24/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY016196.1 Influenza A virus (A/Wellington/14/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY010996.2 Influenza A virus (A/Wellington/2/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY012296.1 Influenza A virus (A/Wellington/7/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY011776.1 Influenza A virus (A/Canterbury/48/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
DQ508857.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2708 2708 100% 0.0 95%
CY010132.1 Influenza A virus (A/Canterbury/100/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY009836.1 Influenza A virus (A/South Canterbury/59/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY009812.1 Influenza A virus (A/Canterbury/78/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY009780.1 Influenza A virus (A/South Canterbury/40/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
CY009756.1 Influenza A virus (A/Canterbury/23/2000(H1N1)) segment 4, complete sequence 2708 2708 100% 0.0 95%
AY289929.1 Influenza A virus (A/New Caledonia/20/99(H1N1)) hemagglutinin (HA) gene, complete cds 2708 2708 100% 0.0 95%

_________________
www.twitter.com/hniman

HA sequences from SD5 and SD6 are closely related

CY089401.1 Influenza A virus (A/swine/South Dakota/5/2011(H1N2)) hemagglutinin (HA) gene, partial cds 3251 3251 99% 0.0 100%
CY089404.1 Influenza A virus (A/swine/South Dakota/6/2011(H1N2)) hemagglutinin (HA) gene, complete cds 3211 3211 99% 0.0 99%
CY086928.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) hemagglutinin (HA) gene, complete cds 3140 3140 99% 0.0 99%
HQ424897.1 Influenza A virus (A/swine/Oklahoma/44837-5/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3132 3132 99% 0.0 99%
CY045623.1 Influenza A virus (A/swine/Oklahoma/011289-9/2008(H1N2)) segment 4 sequence 3100 3100 99% 0.0 98%
CY045607.1 Influenza A virus (A/swine/Oklahoma/010710-9/2008(H1N2)) segment 4 sequence 3100 3100 99% 0.0 98%
CY045703.1 Influenza A virus (A/swine/Oklahoma/020736-1/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045679.1 Influenza A virus (A/swine/Oklahoma/020734-2/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045663.1 Influenza A virus (A/swine/Oklahoma/016179-8/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045655.1 Influenza A virus (A/swine/Oklahoma/011521-4/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045639.1 Influenza A virus (A/swine/Oklahoma/011289-8/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045631.1 Influenza A virus (A/swine/Oklahoma/011289-10/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045615.1 Influenza A virus (A/swine/Oklahoma/010710-8/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045599.1 Influenza A virus (A/swine/Oklahoma/010226-17/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045591.1 Influenza A virus (A/swine/Oklahoma/010226-16/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045519.1 Influenza A virus (A/swine/Oklahoma/032726/2008(H1N2)) segment 4 sequence 3092 3092 99% 0.0 98%
CY045647.1 Influenza A virus (A/swine/Oklahoma/011521-5/2008(H1N2)) segment 4 sequence 3085 3085 99% 0.0 98%
CY045695.1 Influenza A virus (A/swine/Oklahoma/020736-2/2008(H1N2)) segment 4 sequence 3077 3077 99% 0.0 98%
CY045687.1 Influenza A virus (A/swine/Oklahoma/020734-3/2008(H1N2)) segment 4 sequence 3077 3077 99% 0.0 98%
CY045535.1 Influenza A virus (A/swine/Texas/050625/2008(H1N2)) segment 4 sequence 3077 3077 99% 0.0 98%
CY045527.1 Influenza A virus (A/swine/Texas/050593/2008(H1N2)) segment 4 sequence 3077 3077 99% 0.0 98%
CY045671.1 Influenza A virus (A/swine/Oklahoma/016179-9/2008(H1N2)) segment 4 sequence 3069 3069 99% 0.0 98%
HM570049.1 Influenza A virus (A/swine/Minnesota/03023/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3061 3061 99% 0.0 98%
CY045711.1 Influenza A virus (A/swine/Oklahoma/042169/2008(H1N2)) segment 4 sequence 3061 3061 99% 0.0 98%
CY045543.1 Influenza A virus (A/swine/Oklahoma/053259/2008(H1N2)) segment 4 sequence 3053 3053 99% 0.0 98%
HM778117.1 Influenza A virus (A/swine/Minnesota/03043/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3021 3021 99% 0.0 98%
JF312053.1 Influenza A virus (A/swine/Minnesota/A01047604/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3013 3013 99% 0.0 98%
CY081566.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) hemagglutinin (HA) gene, partial cds 2981 2981 99% 0.0 98%
CY078421.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 4 sequence 2981 2981 99% 0.0 98%
CY078424.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 4 sequence 2974 2974 99% 0.0 98%
HM570050.1 Influenza A virus (A/swine/Minnesota/03024/2010(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2918 2918 95% 0.0 98%
HQ424888.1 Influenza A virus (A/swine/North Carolina/44837-2/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2876 2876 99% 0.0 97%
HM193850.1 Influenza A virus (A/swine/Iowa/02998/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2863 2863 99% 0.0 97%
GU480919.1 Influenza A virus (A/swine/SD/31813/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2855 2855 99% 0.0 96%
HM461770.1 Influenza A virus (A/swine/Iowa/02039/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2839 2839 99% 0.0 96%
CY002352.1 Influenza A virus (A/New York/209/2003(H1N2)) segment 4, complete sequence 2759 2759 99% 0.0 96%
EU097962.1 Influenza A virus (A/Denmark/50/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2752 2752 99% 0.0 96%
EU097961.1 Influenza A virus (A/Denmark/12/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2752 2752 99% 0.0 96%
CY017115.1 Influenza A virus (A/New York/C1/2003(H1N2)) segment 4, complete sequence 2752 2752 99% 0.0 96%
CY003368.1 Influenza A virus (A/New York/217/2002(H1N2)) segment 4, complete sequence 2752 2752 99% 0.0 96%
CY002992.1 Influenza A virus (A/New York/226/2003(H1N2)) segment 4, complete sequence 2752 2752 99% 0.0 96%
CY002656.1 Influenza A virus (A/New York/294/2003(H1N2)) segment 4, complete sequence 2752 2752 99% 0.0 96%
EU097960.1 Influenza A virus (A/Denmark/56/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2744 2744 99% 0.0 96%
CY010076.1 Influenza A virus (A/New York/229/2003(H1N2)) segment 4, complete sequence 2744 2744 99% 0.0 96%
CY003761.1 Influenza A virus (A/New York/400/2003(H1N2)) segment 4, complete sequence 2744 2744 99% 0.0 96%
CY002632.1 Influenza A virus (A/New York/231/2003(H1N2)) segment 4, complete sequence 2744 2744 99% 0.0 96%
CY002360.1 Influenza A virus (A/New York/300/2003(H1N2)) segment 4, complete sequence 2744 2744 99% 0.0 96%
CY006403.1 Influenza A virus (A/New York/490/2003(H1N2)) segment 4, complete sequence 2744 2744 99% 0.0 96%
FJ231788.1 Influenza A virus (A/Baden-Wuerttemberg/20/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2736 2736 99% 0.0 96%
CY016324.1 Influenza A virus (A/Michigan/2/2003(H1N2)) segment 4 sequence 2736 2736 99% 0.0 96%
CY006107.1 Influenza A virus (A/New York/219/2003(H1N2)) segment 4, complete sequence 2736 2736 99% 0.0 96%
CY003672.1 Influenza A virus (A/New York/482/2003(H1N2)) segment 4, complete sequence 2736 2736 99% 0.0 96%
CY006867.1 Influenza A virus (A/New York/211/2003(H1N2)) segment 4, complete sequence 2736 2736 99% 0.0 96%
CY006411.1 Influenza A virus (A/New York/492/2003(H1N2)) segment 4, complete sequence 2736 2736 99% 0.0 96%
FJ231789.1 Influenza A virus (A/Baden-Wuerttemberg/129/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2728 2728 99% 0.0 95%
FJ638314.1 Influenza A virus (A/swine/IL/07003243/2007(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2728 2728 99% 0.0 95%
CY006747.1 Influenza A virus (A/New York/225/2003(H1N2)) segment 4, complete sequence 2728 2728 99% 0.0 95%
CY006187.1 Influenza A virus (A/New York/491/2003(H1N2)) segment 4, complete sequence 2722 2722 99% 0.0 95%
FJ231791.1 Influenza A virus (A/Sachsen/678/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2720 2720 99% 0.0 95%
FJ231790.1 Influenza A virus (A/Rheinland-Pfalz/34/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2720 2720 99% 0.0 95%
CY002664.1 Influenza A virus (A/New York/297/2003(H1N2)) segment 4, complete sequence 2720 2720 99% 0.0 95%
CY041903.1 Influenza A virus (A/swine/Minnesota/SG-00239/2007(H1N2)) segment 4 sequence 2712 2712 99% 0.0 95%
CY002152.1 Influenza A virus (A/New York/296/2003(H1N2)) segment 4, complete sequence 2712 2712 99% 0.0 95%
CY016326.1 Influenza A virus (A/Michigan/3/2003(H1N2)) segment 4 sequence 2708 2708 99% 0.0 95%
DQ280227.1 Influenza A virus (A/swine/Ontario/52156/03(H1N2)) hemagglutinin (HA) gene, complete cds 2696 2696 99% 0.0 95%
CY001680.2 Influenza A virus (A/New York/78/2002(H1N2)) segment 4, complete sequence 2688 2688 99% 0.0 95%
CY003769.1 Influenza A virus (A/New York/417/2002(H1N2)) segment 4, complete sequence 2680 2680 99% 0.0 95%
CY006395.1 Influenza A virus (A/New York/487/2003(H1N2)) segment 4, complete sequence 2680 2680 99% 0.0 95%
FJ231787.1 Influenza A virus (A/Sachsen/11.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2672 2672 99% 0.0 95%
FJ231786.1 Influenza A virus (A/Sachsen/2005.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2672 2672 99% 0.0 95%
CY003696.1 Influenza A virus (A/New York/489/2003(H1N2)) segment 4, complete sequence 2672 2672 99% 0.0 95%
DQ280212.1 Influenza A virus (A/swine/Ontario/55383/04(H1N2)) hemagglutinin (HA) gene, complete cds 2672 2672 99% 0.0 95%
DQ280236.1 Influenza A virus (A/swine/Ontario/48235/04(H1N2)) hemagglutinin (HA) gene, complete cds 2664 2664 99% 0.0 95%
CY006387.1 Influenza A virus (A/New York/481/2003(H1N2)) segment 4, complete sequence 2664 2664 99% 0.0 95%
EU097959.1 Influenza A virus (A/Denmark/86/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2640 2640 99% 0.0 95%
HM461802.1 Influenza A virus (A/swine/Minnesota/02011/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2625 2625 98% 0.0 95%
EU097936.1 Influenza A virus (A/Denmark/11/2001(H1N1)) hemagglutinin (HA) gene, complete cds 2609 2609 99% 0.0 95%
CY025034.1 Influenza A virus (A/Auckland/597/2000(H1N1)) segment 4, complete sequence 2605 2605 99% 0.0 95%
CY040138.1 Influenza A virus (A/Taiwan/5072/1999(H1N1)) segment 4, complete sequence 2601 2601 99% 0.0 95%
CY022509.1 Influenza A virus (A/Auckland/590/2000(H1N1)) segment 4, complete sequence 2601 2601 99% 0.0 95%
CY016643.1 Influenza A virus (A/New South Wales/18/1999(H1N1)) segment 4, complete sequence 2601 2601 99% 0.0 95%
CY011584.1 Influenza A virus (A/Dunedin/2/2000(H1N1)) segment 4, complete sequence 2601 2601 99% 0.0 95%
HM461850.1 Influenza A virus (A/swine/Texas/01976/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2593 2593 99% 0.0 94%
CY033622.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
EU097934.1 Influenza A virus (A/Denmark/3/2001(H1N1)) hemagglutinin (HA) gene, complete cds 2593 2593 99% 0.0 94%
EU103824.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2593 2593 99% 0.0 94%
CY022485.1 Influenza A virus (A/Auckland/586/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY022149.1 Influenza A virus (A/Auckland/579/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY021629.1 Influenza A virus (A/Wellington/4/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY017123.1 Influenza A virus (A/New South Wales/24/1999(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY016971.1 Influenza A virus (A/Wellington/24/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY016196.1 Influenza A virus (A/Wellington/14/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY010996.2 Influenza A virus (A/Wellington/2/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY012296.1 Influenza A virus (A/Wellington/7/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY011776.1 Influenza A virus (A/Canterbury/48/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
DQ508857.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2593 2593 99% 0.0 94%
CY010132.1 Influenza A virus (A/Canterbury/100/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY009836.1 Influenza A virus (A/South Canterbury/59/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY009812.1 Influenza A virus (A/Canterbury/78/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%
CY009780.1 Influenza A virus (A/South Canterbury/40/2000(H1N1)) segment 4, complete sequence 2593 2593 99% 0.0 94%

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HA from SD7 closely related to 2007 sequences from Hudson county fair

CY089407.1 Influenza A virus (A/swine/South Dakota/7/2011(H1N1)) hemagglutinin (HA) gene, complete cds 3372 3372 100% 0.0 100%
HM570051.1 Influenza A virus (A/swine/Minnesota/03025/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3285 3285 100% 0.0 99%
GQ484355.1 Influenza A virus (A/swine/Kansas/77778/2007(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3261 3261 100% 0.0 99%
FJ986621.1 Influenza A virus (A/Ohio/02/2007(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3253 3253 100% 0.0 99%
FJ986620.1 Influenza A virus (A/Ohio/01/2007(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3253 3253 100% 0.0 99%
EU604689.1 Influenza A virus (A/swine/OH/511445/2007(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3253 3253 100% 0.0 99%
HQ378729.1 Influenza A virus(A/swine/Iowa/46519-1/2007(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3237 3237 100% 0.0 99%
HM193851.1 Influenza A virus (A/swine/Iowa/02999/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3237 3237 100% 0.0 99%
JF312070.1 Influenza A virus (A/swine/Iowa/A01057153/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3229 3229 100% 0.0 98%
HM461778.1 Influenza A virus (A/swine/Ohio/02026/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 3215 3215 99% 0.0 98%
CY086912.1 Influenza A virus (A/swine/Minnesota/226128/2010(H1N1)) hemagglutinin (HA) gene, complete cds 3213 3213 100% 0.0 98%
JF312060.1 Influenza A virus (A/swine/Minnesota/A01047613/2010(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3205 3205 100% 0.0 98%
HM804853.1 Influenza A virus (A/swine/SD/1/2010(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 3205 3205 99% 0.0 98%
HM461810.1 Influenza A virus (A/swine/Missouri/02060/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 3192 3192 99% 0.0 98%
HQ378741.1 Influenza A virus(A/swine/Missouri/46519-5/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 3134 3134 100% 0.0 98%
EU409948.1 Influenza A virus (A/swine/Ohio/24366/2007(H1N1)) hemagglutinin (HA) gene, partial cds 3112 3112 95% 0.0 99%
EU409960.1 Influenza A virus (A/swine/Ohio/C62006/2006(H1N1)) hemagglutinin (HA) gene, partial cds 3096 3096 97% 0.0 98%
CY040543.1 Influenza A virus (A/swine/North Carolina/7386/2004(H1N1)) segment 4 sequence 3063 3063 100% 0.0 97%
HM461818.1 Influenza A virus (A/swine/North Carolina/02023/2008(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 3057 3057 99% 0.0 97%
CY040571.1 Influenza A virus (A/swine/North Carolina/12869/2003(H1N1)) segment 4 sequence 3031 3031 100% 0.0 97%
CY040603.1 Influenza A virus (A/swine/North Carolina/48718/2003(H1)) segment 4 sequence 3023 3023 100% 0.0 97%
CY040586.1 Influenza A virus (A/swine/North Carolina/12866/2003(H1)) segment 4 sequence 3023 3023 100% 0.0 97%
CY040576.1 Influenza A virus (A/swine/North Carolina/38767/2003(H1N1)) segment 4 sequence 3015 3015 100% 0.0 97%
CY040573.1 Influenza A virus (A/swine/North Carolina/26292/2003(H1N1)) segment 4 sequence 3015 3015 100% 0.0 97%
CY040555.1 Influenza A virus (A/swine/North Carolina/46858/2003(H1N1)) segment 4 sequence 3015 3015 100% 0.0 97%
CY040594.1 Influenza A virus (A/swine/North Carolina/45119/2003(H1)) segment 4 sequence 3007 3007 100% 0.0 97%
CY040593.1 Influenza A virus (A/swine/North Carolina/44888/2003(H1)) segment 4 sequence 3007 3007 100% 0.0 97%
CY040591.1 Influenza A virus (A/swine/North Carolina/43506/2003(H1)) segment 4 sequence 3007 3007 100% 0.0 97%
CY040561.1 Influenza A virus (A/swine/North Carolina/28126/2003(H1N1)) segment 4 sequence 3007 3007 100% 0.0 97%
CY040547.1 Influenza A virus (A/swine/North Carolina/43110/2003(H1N1)) segment 4 sequence 3007 3007 100% 0.0 97%
CY040578.1 Influenza A virus (A/swine/North Carolina/42577/2003(H1N1)) segment 4 sequence 2999 2999 100% 0.0 97%
CY040569.1 Influenza A virus (A/swine/North Carolina/34562/2003(H1N1)) segment 4 sequence 2999 2999 100% 0.0 97%
CY040563.1 Influenza A virus (A/swine/North Carolina/43904/2003(H1N1)) segment 4 sequence 2999 2999 100% 0.0 97%
CY040557.1 Influenza A virus (A/swine/North Carolina/47437/2003(H1N1)) segment 4 sequence 2999 2999 100% 0.0 97%
GU984384.1 Influenza A virus (A/swine/OR/10-004060/2009(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2991 2991 100% 0.0 97%
CY040602.1 Influenza A virus (A/swine/North Carolina/47754/2003(H1)) segment 4 sequence 2991 2991 100% 0.0 97%
CY040592.1 Influenza A virus (A/swine/North Carolina/44524/2003(H1)) segment 4 sequence 2991 2991 100% 0.0 97%
CY040565.1 Influenza A virus (A/swine/North Carolina/46130/2003(H1N1)) segment 4 sequence 2991 2991 100% 0.0 97%
CY040600.1 Influenza A virus (A/swine/North Carolina/44885/2003(H1)) segment 4 sequence 2983 2983 100% 0.0 97%
CY040599.1 Influenza A virus (A/swine/North Carolina/44275/2003(H1)) segment 4 sequence 2983 2983 100% 0.0 97%
CY040551.1 Influenza A virus (A/swine/North Carolina/44012/2003(H1N1)) segment 4 sequence 2983 2983 100% 0.0 97%
CY040601.1 Influenza A virus (A/swine/North Carolina/45090/2003(H1)) segment 4 sequence 2954 2954 99% 0.0 97%
CY040595.1 Influenza A virus (A/swine/North Carolina/9856/2003(H1)) segment 4 sequence 2952 2952 100% 0.0 96%
AY060050.1 Influenza A virus (A/SW/MN/16419/01(H1N2)) hemagglutinin (HA) gene, complete cds 2920 2920 99% 0.0 96%
AF455675.1 Influenza A virus (A/Swine/Ohio/891/01(H1N2)) hemagglutinin (HA) gene, complete cds 2904 2904 100% 0.0 96%
AY060047.1 Influenza A virus (A/SW/MN/23124-T/01(H1N2)) hemagglutinin (HA) gene, complete cds 2888 2888 100% 0.0 96%
AF250124.1 Influenza A virus (A/Swine/Indiana/9K035/99 (H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2888 2888 100% 0.0 96%
EU139830.1 Influenza A virus (A/swine/Minnesota/00194/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2880 2880 100% 0.0 96%
AY060048.1 Influenza A virus (A/SW/MN/23124-S/01(H1N2)) hemagglutinin (HA) gene, complete cds 2872 2872 100% 0.0 96%
AF455681.1 Influenza A virus (A/Swine/Illinois/100085A/01 (H1N2)) hemagglutinin (HA) gene, complete cds 2864 2864 100% 0.0 96%
FJ986619.1 Influenza A virus (A/Wisconsin/87/2005(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 2863 2863 98% 0.0 96%
AF455682.1 Influenza A virus (A/Swine/Illinois/100084/01 (H1N2)) hemagglutinin (HA) gene, complete cds 2841 2841 100% 0.0 96%
EU139828.1 Influenza A virus (A/swine/Minnesota/1192/2001(H1N2)) hemagglutinin (HA) gene, complete cds 2801 2801 100% 0.0 95%
EU139831.1 Influenza A virus (A/swine/Kansas/00246/2004(H1N2)) hemagglutinin (HA) gene, complete cds 2785 2785 100% 0.0 95%
AF455680.1 Influenza A virus (A/Swine/Indiana/P12439/00 (H1N2)) hemagglutinin (HA) gene, complete cds 2761 2761 100% 0.0 95%
AY038014.1 Influenza A virus (A/Turkey/MO/24093/99(H1N2)) hemagglutinin (H1) gene, complete cds 2753 2753 100% 0.0 95%
GQ229365.1 Influenza A virus (A/swine/Hong Kong/NS623/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2750 2750 100% 0.0 95%
CY085622.1 Influenza A virus (A/swine/Hong Kong/NS30/2004(H1N2)) hemagglutinin (HA) gene, complete cds 2726 2726 100% 0.0 95%
DQ666933.1 Influenza A virus (A/swine/Korea/S11/2005(H1N2)) segment 4 hemagglutinin gene, complete cds 2710 2710 99% 0.0 95%
CY085662.1 Influenza A virus (A/swine/Hong Kong/1111/2004(H1N2)) hemagglutinin (HA) gene, complete cds 2690 2690 100% 0.0 94%
CY085606.1 Influenza A virus (A/swine/Hong Kong/1578/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2690 2690 100% 0.0 94%
CY086795.1 Influenza A virus (A/swine/Hong Kong/562/2005(H1N2)) hemagglutinin (HA) gene, complete cds 2674 2674 100% 0.0 94%
CY085734.1 Influenza A virus (A/swine/Hong Kong/729/2005(H1N2)) hemagglutinin (HA) gene, complete cds 2658 2658 100% 0.0 94%
EF556201.1 Influenza A virus (A/swine/Guangxi/17/2005(H1N2)) hemagglutinin (HA) gene, complete cds 2658 2658 100% 0.0 94%
GQ229309.1 Influenza A virus (A/swine/Hong Kong/78/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2639 2639 100% 0.0 94%
EU798785.1 Influenza A virus (A/swine/Korea/PZ4/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2639 2639 99% 0.0 94%
EU798787.1 Influenza A virus (A/swine/Korea/PZ14/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2631 2631 99% 0.0 94%
EU798786.1 Influenza A virus (A/swine/Korea/PZ7/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2631 2631 99% 0.0 94%
CY086799.1 Influenza A virus (A/swine/Hong Kong/NS856/2005(H1N2)) hemagglutinin (HA) gene, complete cds 2627 2627 100% 0.0 94%
GQ229333.1 Influenza A virus (A/swine/Hong Kong/1562/2005(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2627 2627 100% 0.0 94%
EU798782.1 Influenza A virus (A/swine/Korea/JL02/2005(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2627 2627 99% 0.0 94%
EF556199.1 Influenza A virus (A/swine/Guangxi/13/2006(H1N2)) hemagglutinin (HA) gene, complete cds 2627 2627 100% 0.0 94%
CY040596.1 Influenza A virus (A/swine/North Carolina/26762/2003(H1)) segment 4 sequence 2623 2623 100% 0.0 94%
EU798788.1 Influenza A virus (A/swine/Korea/CY08/2007(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2623 2623 99% 0.0 94%
CY086827.1 Influenza A virus (A/swine/Hong Kong/823/2006(H1N2)) hemagglutinin (HA) gene, complete cds 2619 2619 100% 0.0 94%
AF455677.1 Influenza A virus (A/Swine/North Carolina/93523/01 (H1N2)) hemagglutinin (HA) gene, complete cds 2615 2615 100% 0.0 94%
GQ229269.1 Influenza A virus (A/swine/Hong Kong/915/2004(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2611 2611 100% 0.0 94%
EU798780.1 Influenza A virus (A/swine/Korea/Hongsong2/2004(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2597 2597 99% 0.0 94%
EU798781.1 Influenza A virus (A/swine/Korea/JL01/2005(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2595 2595 99% 0.0 94%
GQ229373.1 Influenza A virus (A/swine/Hong Kong/1110/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2587 2587 100% 0.0 94%
CY035070.1 Influenza A virus (A/swine/Memphis/1/1990(H1N1)) segment 4, complete sequence 2587 2587 100% 0.0 94%
EU798784.1 Influenza A virus (A/swine/Korea/Asan04/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2587 2587 99% 0.0 94%
EU798783.1 Influenza A virus (A/swine/Korea/JL04/2005(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2587 2587 99% 0.0 94%
CY022477.1 Influenza A virus (A/swine/Maryland/23239/1991(H1N1)) segment 4, complete sequence 2587 2587 100% 0.0 94%
GU086081.1 Influenza A virus (A/swine/Guangdong/1222/2006(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2563 2563 100% 0.0 94%
EU743159.1 Influenza A virus (A/turkey/IA/21089-3/1992(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds 2555 2555 100% 0.0 93%
CY028780.1 Influenza A virus (A/swine/California/T9001707/1991(H1N1)) segment 4, complete sequence 2555 2555 100% 0.0 93%
CY027155.1 Influenza A virus (A/swine/Iowa/24297/1991(H1N1)) segment 4, complete sequence 2555 2555 100% 0.0 93%
CY086867.1 Influenza A virus (A/swine/Hong Kong/NS856/2007(H1N2)) hemagglutinin (HA) gene, complete cds 2543 2543 100% 0.0 93%
CY085073.1 Influenza A virus (A/swine/Hong Kong/1286/1993(H1N1)) hemagglutinin (HA) gene, complete cds 2531 2531 100% 0.0 93%
CY040559.1 Influenza A virus (A/swine/North Carolina/9647/2003(H1N1)) segment 4 sequence 2531 2531 100% 0.0 93%
CY085998.1 Influenza A virus (A/swine/Hong Kong/NS252/2009(H1N2)) hemagglutinin (HA) gene, complete cds 2516 2516 100% 0.0 93%
CY085105.1 Influenza A virus (A/swine/Hong Kong/1795/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2516 2516 100% 0.0 93%
EU735786.1 Influenza A virus (A/turkey/NC/19762/1988(H1N1)) hemagglutinin (HA) gene, complete cds 2516 2516 100% 0.0 93%
CY087056.1 Influenza A virus (A/swine/Hong Kong/2422/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2512 2512 100% 0.0 93%
CY085121.1 Influenza A virus (A/swine/Hong Kong/1937/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2512 2512 100% 0.0 93%
CY087104.1 Influenza A virus (A/swine/Hong Kong/2518/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2504 2504 100% 0.0 93%
CY087096.1 Influenza A virus (A/swine/Hong Kong/2507/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2504 2504 100% 0.0 93%
CY087080.1 Influenza A virus (A/swine/Hong Kong/2461/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2504 2504 100% 0.0 93%
CY087072.1 Influenza A virus (A/swine/Hong Kong/2445/1994(H1N1)) hemagglutinin (HA) gene, complete cds 2504 2504 100% 0.0 93%

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Top 100 NA matches for SD7

CY089408.1 Influenza A virus (A/swine/South Dakota/7/2011(H1N1)) neuraminidase (NA) gene, partial cds 2748 2748 100% 0.0 100%
HM804855.1 Influenza A virus (A/swine/SD/1/2010(H1N1)) segment 6 neuraminidase (NA) gene, partial cds 2613 2613 100% 0.0 98%
JF312074.1 Influenza A virus (A/swine/Iowa/A01057153/2010(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2597 2597 100% 0.0 98%
CY086914.1 Influenza A virus (A/swine/Minnesota/226128/2010(H1N1)) neuraminidase (NA) gene, complete cds 2589 2589 100% 0.0 98%
JF312062.1 Influenza A virus (A/swine/Minnesota/A01047613/2010(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2573 2573 100% 0.0 98%
GU135869.1 Influenza A virus (A/swine/Iowa/H02NJ56371/2002(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2422 2422 100% 0.0 97%
EU798818.1 Influenza A virus (A/swine/Korea/CAN01/2004(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2422 2422 100% 0.0 97%
GU135951.1 Influenza A virus (A/swine/Iowa/H03LJ10/2003(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2415 2415 100% 0.0 96%
EU798819.1 Influenza A virus (A/swine/Korea/CAS08/2005(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2407 2407 100% 0.0 96%
GU135975.1 Influenza A virus (A/swine/Iowa/H03UWF2/2003(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2391 2391 100% 0.0 96%
HM125976.1 Influenza A virus (A/swine/MN/48683/2002(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2391 2391 100% 0.0 96%
GU135877.1 Influenza A virus (A/swine/Iowa/H02NJ56391/2002(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
GU135959.1 Influenza A virus (A/swine/Iowa/H03LS4/2003(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
GU135906.1 Influenza A virus (A/swine/Iowa/H02HE4/2002(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
GU135912.1 Influenza A virus (A/swine/Iowa/H03G1/2003(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
CY040542.1 Influenza A virus (A/swine/Texas/36440-2/2005(H1N1)) segment 6 sequence 2345 2345 97% 0.0 96%
GU135967.1 Influenza A virus (A/swine/Iowa/H03US3/2003(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 96%
GQ452237.1 Influenza A virus (A/swine/Iowa/H04YS2/2004(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2288 2288 100% 0.0 95%
DQ889687.1 Influenza A virus (A/Iowa/CEID23/2005(H1N1)) neuraminidase (NA) gene, complete cds 2288 2288 100% 0.0 95%
DQ145538.1 Influenza A virus (A/swine/Minnesota/00395/2004(H3N1)) neuraminidase gene, complete cds 2232 2232 100% 0.0 95%
EU139842.1 Influenza A virus (A/swine/Iowa/00239/2004(H1N1)) neuraminidase (NA) gene, partial cds 2226 2226 98% 0.0 95%
DQ280251.1 Influenza A virus (A/swine/Ontario/11112/04(H1N1)) neuraminidase (NA) gene, complete cds 2200 2200 100% 0.0 95%
DQ280194.1 Influenza A virus (A/swine/Ontario/57561/03(H1N1)) neuraminidase (NA) gene, complete cds 2200 2200 100% 0.0 95%
HQ378733.1 Influenza A virus(A/swine/Iowa/46519-2/2008(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2192 2192 100% 0.0 94%
HQ378736.1 Influenza A virus(A/swine/Iowa/46519-3/2008(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2185 2185 100% 0.0 94%
DQ280242.1 Influenza A virus (A/swine/Ontario/23866/04(H1N1)) neuraminidase (NA) gene, complete cds 2169 2169 100% 0.0 94%
CY040520.1 Influenza A virus (A/swine/Illinois/40043/2005(H1N1)) segment 6 sequence 2167 2167 97% 0.0 95%
HM461844.1 Influenza A virus (A/swine/Iowa/02096/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds 2155 2155 99% 0.0 94%
HQ378739.1 Influenza A virus(A/swine/Iowa/46519-4/2008(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2153 2153 100% 0.0 94%
HM125984.1 Influenza A virus (A/swine/MN/23506/2009(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2153 2153 100% 0.0 94%
DQ280218.1 Influenza A virus (A/swine/Ontario/53518/03(H1N1)) neuraminidase (NA) gene, complete cds 2153 2153 100% 0.0 94%
HM461836.1 Influenza A virus (A/swine/Nebraska/02013/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds 2137 2137 97% 0.0 94%
HM461828.1 Influenza A virus (A/swine/North Carolina/02084/2008(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 2089 2089 98% 0.0 94%
HM461796.1 Influenza A virus (A/swine/Minnesota/02093/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds 2060 2060 99% 0.0 93%
HM461764.1 Influenza A virus (A/swine/Minnesota/02053/2008(H1N1)) segment 6 neuraminidase (NA) gene, partial cds 2044 2044 99% 0.0 93%
U86145.1 Influenza A virus (A/Swine/Quebec/5393/91 (SwQc91)) neuraminidase mRNA, complete cds 1939 1939 100% 0.0 92%
CY025012.1 Influenza A virus (A/swine/Kansas/3024/1987(H1N1)) segment 6, complete sequence 1883 1883 100% 0.0 92%
CY022471.1 Influenza A virus (A/swine/Kansas/3228/1987(H1N1)) segment 6, complete sequence 1871 1871 100% 0.0 91%
CY027509.1 Influenza A virus (A/swine/Iowa/2/1985(H1N1)) segment 6, complete sequence 1859 1859 100% 0.0 91%
CY022319.1 Influenza A virus (A/swine/Iowa/1/1985(H1N1)) segment 6, complete sequence 1859 1859 100% 0.0 91%
CY022327.1 Influenza A virus (A/swine/Iowa/3/1985(H1N1)) segment 6, complete sequence 1859 1859 100% 0.0 91%
EU743145.1 Influenza A virus (A/turkey/MO/21939/1987(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1857 1857 99% 0.0 91%
EU735796.1 Influenza A virus (A/chicken/PA/35154/1991(H1N1)) neuraminidase (NA) gene, complete cds 1852 1852 100% 0.0 91%
EU742638.1 Influenza A virus (A/turkey/KS/4880/1980(H1N1)) neuraminidase (NA) gene, complete cds 1852 1852 100% 0.0 91%
CY028173.1 Influenza A virus (A/swine/Iowa/2/1987(H1N1)) segment 6, complete sequence 1844 1844 100% 0.0 91%
CY028790.1 Influenza A virus (A/swine/Iowa/1/1986(H1N1)) segment 6, complete sequence 1836 1836 100% 0.0 91%
CY028189.1 Influenza A virus (A/swine/Wisconsin/30747/1976(H1N1)) segment 6, complete sequence 1836 1836 100% 0.0 91%
CY027525.1 Influenza A virus (A/swine/Tennessee/8/1978(H1N1)) segment 6, complete sequence 1836 1836 100% 0.0 91%
CY027517.1 Influenza A virus (A/swine/Tennessee/5/1978(H1N1)) segment 6, complete sequence 1836 1836 100% 0.0 91%
CY024956.1 Influenza A virus (A/swine/Tennessee/84/1977(H1N1)) segment 6, complete sequence 1836 1836 100% 0.0 91%
GU236519.1 Influenza A virus (A/swine/Skane/1321/1983(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1828 1828 100% 0.0 91%
CY036801.1 Influenza A virus (A/swine/Wisconsin/30954/1976(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY028429.1 Influenza A virus (A/swine/Tennessee/4/1978(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY027309.1 Influenza A virus (A/swine/Tennessee/2/1978(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY024980.1 Influenza A virus (A/swine/Tennessee/88/1977(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY024972.1 Influenza A virus (A/swine/Tennessee/87/1977(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY022972.1 Influenza A virus (A/swine/Iowa/31483/1988(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY022303.1 Influenza A virus (A/swine/Tennessee/82/1977(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY022271.1 Influenza A virus (A/swine/Tennessee/10/1977(H1N1)) segment 6, complete sequence 1828 1828 100% 0.0 91%
CY022351.1 Influenza A virus (A/swine/Kentucky/1/1976(H1N1)) segment 6, complete sequence 1826 1826 98% 0.0 91%
EU735788.1 Influenza A virus (A/turkey/NC/19762/1988(H1N1)) neuraminidase (NA) gene, complete cds 1820 1820 100% 0.0 91%
CY022367.1 Influenza A virus (A/swine/Minnesota/5892-7/1979(H1N1)) segment 6, complete sequence 1820 1820 100% 0.0 91%
CY039919.1 Influenza A Virus (A/swine/Wisconsin/1915/1988(H1N1)) segment 6, complete sequence 1812 1812 100% 0.0 91%
CY026141.1 Influenza A virus (A/Wisconsin/301/1976(H1N1)) segment 6, complete sequence 1812 1812 100% 0.0 91%
CY022431.1 Influenza A virus (A/swine/Wisconsin/1915/1988(H1N1)) segment 6, complete sequence 1812 1812 100% 0.0 91%
CY022135.1 Influenza A virus (A/swine/Tennessee/49/1977(H1N1)) segment 6, complete sequence 1812 1812 100% 0.0 91%
GU052269.1 Influenza A virus (A/Swine/Indiana/1726/1988(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1804 1804 100% 0.0 91%
CY039927.1 Influenza A Virus (A/swine/Indiana/1726/1988(H1N1)) segment 6, complete sequence 1804 1804 100% 0.0 91%
CY024935.1 Influenza A virus (A/swine/Minnesota/24/1975(H1N1)) segment 6, complete sequence 1804 1804 100% 0.0 91%
CY022359.1 Influenza A virus (A/swine/Minnesota/27/1976(H1N1)) segment 6, complete sequence 1804 1804 100% 0.0 91%
CY024927.1 Influenza A virus (A/Ohio/3559/1988(H1N1)) segment 6, complete sequence 1796 1796 100% 0.0 91%
CY024996.1 Influenza A virus (A/swine/Wisconsin/663/1980(H1N1)) segment 6, complete sequence 1796 1796 100% 0.0 91%
CY022996.1 Influenza A virus (A/swine/Wisconsin/629/1980(H1N1)) segment 6, complete sequence 1796 1796 100% 0.0 91%
CY022455.1 Influenza A virus (A/swine/Wisconsin/661/1980(H1N1)) segment 6, complete sequence 1796 1796 100% 0.0 91%
CY022447.1 Influenza A virus (A/swine/Wisconsin/641/1980(H1N1)) segment 6, complete sequence 1796 1796 100% 0.0 91%
FJ357106.1 Influenza A virus (A/turkey/NC/17026/1988(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1792 1792 98% 0.0 91%
CY035072.1 Influenza A virus (A/swine/Memphis/1/1990(H1N1)) segment 6, complete sequence 1788 1788 100% 0.0 91%
CY022479.1 Influenza A virus (A/swine/Maryland/23239/1991(H1N1)) segment 6, complete sequence 1788 1788 100% 0.0 91%
CY022463.1 Influenza A virus (A/swine/Wisconsin/8/1980(H1N1)) segment 6, complete sequence 1788 1788 100% 0.0 91%
CY039993.1 Influenza A Virus (A/New Jersey/8/1976(H1N1)) segment 6, complete sequence 1780 1780 100% 0.0 91%
EU743153.1 Influenza A virus (A/turkey/IA/10271-3/1990(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1780 1780 100% 0.0 91%
CY028782.1 Influenza A virus (A/swine/California/T9001707/1991(H1N1)) segment 6, complete sequence 1780 1780 100% 0.0 91%
CY026453.1 Influenza A virus (A/swine/Ontario/6/1981(H1N1)) segment 6, complete sequence 1764 1764 100% 0.0 91%
CY026445.1 Influenza A virus (A/swine/Ontario/3/1981(H1N1)) segment 6, complete sequence 1764 1764 100% 0.0 91%
CY026437.1 Influenza A virus (A/swine/Ontario/2/1981(H1N1)) segment 6, complete sequence 1764 1764 100% 0.0 91%
CY022383.1 Influenza A virus (A/swine/Ontario/4/1981(H1N1)) segment 6, complete sequence 1764 1764 100% 0.0 91%
CY039911.1 Influenza A Virus (A/Maryland/12/1991(H1N1)) segment 6, complete sequence 1756 1756 100% 0.0 90%
CY027157.1 Influenza A virus (A/swine/Iowa/24297/1991(H1N1)) segment 6, complete sequence 1756 1756 100% 0.0 90%
CY022980.1 Influenza A virus (A/swine/Ontario/1/1981(H1N1)) segment 6, complete sequence 1756 1756 100% 0.0 90%
CY022423.1 Influenza A virus (A/swine/Wisconsin/11/1980(H1N1)) segment 6, complete sequence 1756 1756 100% 0.0 90%
CY022391.1 Influenza A virus (A/swine/Ontario/7/1981(H1N1)) segment 6, complete sequence 1756 1756 100% 0.0 90%
U53166.1 Influenza A virus (A/WI/4754/1994(H1N1)) neuraminidase (NA) mRNA, complete cds 1756 1756 99% 0.0 91%
EU743161.1 Influenza A virus (A/turkey/IA/21089-3/1992(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1748 1748 100% 0.0 90%
CY085059.1 Influenza A virus (A/swine/Hong Kong/1223/1993(H1N1)) neuraminidase (NA) gene, complete cds 1740 1740 100% 0.0 90%
CY085019.1 Influenza A virus (A/swine/Hong Kong/172/1993(H1N1)) neuraminidase (NA) gene, complete cds 1740 1740 100% 0.0 90%
CY085051.1 Influenza A virus (A/swine/Hong Kong/1219/1993(H1N1)) neuraminidase (NA) gene, complete cds 1737 1737 100% 0.0 90%
GQ229282.1 Influenza A virus (A/swine/Hong Kong/103/1993(H1N1)) segment 6 neuraminidase (NA) gene, complete cds 1737 1737 100% 0.0 90%
CY085075.1 Influenza A virus (A/swine/Hong Kong/1286/1993(H1N1)) neuraminidase (NA) gene, complete cds 1733 1733 100% 0.0 90%
CY085043.1 Influenza A virus (A/swine/Hong Kong/829/1993(H1N1)) neuraminidase (NA) gene, complete cds 1729 1729 100% 0.0 90%
CY085035.1 Influenza A virus (A/swine/Hong Kong/813/1993(H1N1)) neuraminidase (NA) gene, complete cds 1729 1729 100% 0.0 90%

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Top 100 NA matches for SD5 (note relationship to trH3N2 in Pennsylvania)

CY086930.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) neuraminidase (NA) gene, complete cds 2724 2724 100% 0.0 99%
HQ424898.1 Influenza A virus (A/swine/Oklahoma/44837-5/2010(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2668 2668 100% 0.0 98%
CY045601.1 Influenza A virus (A/swine/Oklahoma/010226-17/2008(H1N2)) segment 6 sequence 2644 2644 100% 0.0 98%
CY045705.1 Influenza A virus (A/swine/Oklahoma/020736-1/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045697.1 Influenza A virus (A/swine/Oklahoma/020736-2/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045689.1 Influenza A virus (A/swine/Oklahoma/020734-3/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045649.1 Influenza A virus (A/swine/Oklahoma/011521-5/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045641.1 Influenza A virus (A/swine/Oklahoma/011289-8/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045633.1 Influenza A virus (A/swine/Oklahoma/011289-10/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045625.1 Influenza A virus (A/swine/Oklahoma/011289-9/2008(H1N2)) segment 6 sequence 2637 2637 100% 0.0 98%
CY045609.1 Influenza A virus (A/swine/Oklahoma/010710-9/2008(H1N2)) segment 6 sequence 2629 2629 100% 0.0 98%
CY045593.1 Influenza A virus (A/swine/Oklahoma/010226-16/2008(H1N2)) segment 6 sequence 2629 2629 100% 0.0 98%
CY045681.1 Influenza A virus (A/swine/Oklahoma/020734-2/2008(H1N2)) segment 6 sequence 2621 2621 100% 0.0 98%
CY045617.1 Influenza A virus (A/swine/Oklahoma/010710-8/2008(H1N2)) segment 6 sequence 2621 2621 100% 0.0 98%
CY045537.1 Influenza A virus (A/swine/Texas/050625/2008(H1N2)) segment 6 sequence 2621 2621 100% 0.0 98%
CY045521.1 Influenza A virus (A/swine/Oklahoma/032726/2008(H1N2)) segment 6 sequence 2619 2619 99% 0.0 98%
CY045673.1 Influenza A virus (A/swine/Oklahoma/016179-9/2008(H1N2)) segment 6 sequence 2613 2613 100% 0.0 98%
CY045665.1 Influenza A virus (A/swine/Oklahoma/016179-8/2008(H1N2)) segment 6 sequence 2613 2613 100% 0.0 98%
CY045657.1 Influenza A virus (A/swine/Oklahoma/011521-4/2008(H1N2)) segment 6 sequence 2613 2613 100% 0.0 98%
CY045529.1 Influenza A virus (A/swine/Texas/050593/2008(H1N2)) segment 6 sequence 2613 2613 100% 0.0 98%
CY045545.1 Influenza A virus (A/swine/Oklahoma/053259/2008(H1N2)) segment 6 sequence 2597 2597 100% 0.0 98%
CY045713.1 Influenza A virus (A/swine/Oklahoma/042169/2008(H1N2)) segment 6 sequence 2565 2565 100% 0.0 97%
CY045561.1 Influenza A virus (A/swine/Kansas/015252/2009(H3N2)) segment 6 sequence 2557 2557 100% 0.0 97%
CY045553.1 Influenza A virus (A/swine/Oklahoma/001142/2009(H3N2)) segment 6 sequence 2549 2549 100% 0.0 97%
JF312068.1 Influenza A virus (A/swine/Pennsylvania/62170-3/2010(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2510 2510 100% 0.0 97%
JF312066.1 Influenza A virus (A/swine/Pennsylvania/62170-1/2010(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2510 2510 100% 0.0 97%
CY078425.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 6 sequence 2494 2494 100% 0.0 97%
CY078422.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 6 sequence 2494 2494 100% 0.0 97%
JF312067.1 Influenza A virus (A/swine/Pennsylvania/62170-2/2010(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2486 2486 100% 0.0 97%
JF312055.1 Influenza A virus (A/swine/Minnesota/A01047604/2010(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2486 2486 100% 0.0 97%
CY081567.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) neuraminidase (NA) gene, complete cds 2486 2486 100% 0.0 97%
JF312069.1 Influenza A virus (A/swine/Pennsylvania/62170-4/2010(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2470 2470 100% 0.0 97%
HQ424889.1 Influenza A virus (A/swine/North Carolina/44837-2/2009(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2470 2470 100% 0.0 97%
EU735820.1 Influenza A virus (A/turkey/OH/313053/2004(H3N2)) neuraminidase (NA) gene, complete cds 2422 2422 100% 0.0 96%
DQ335773.1 Influenza A virus (A/turkey/Ohio/313053/04(H3N2)) neuraminidase (NA) gene, complete cds 2422 2422 100% 0.0 96%
DQ469976.1 Influenza A virus (A/swine/British Columbia/28103/2005(H3N2)) neuraminidase (NA) gene, complete cds 2405 2405 99% 0.0 96%
EU735828.1 Influenza A virus (A/turkey/NC/353568/2005(H3N2)) neuraminidase (NA) gene, complete cds 2399 2399 100% 0.0 96%
EU826544.2 Influenza A virus (A/swine/Quebec/4001/2005(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2391 2391 100% 0.0 96%
HQ825168.1 Influenza A virus (A/turkey/BC/1529-3/2005(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
EF551055.1 Influenza A virus (A/swine/North Carolina/2003(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
EF551047.1 Influenza A virus (A/turkey/Illinois/2004(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
DQ469992.1 Influenza A virus (A/swine/Ontario/33853/2005(H3N2)) neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
DQ469960.1 Influenza A virus (A/Ontario/RV1273/2005(H3N2)) neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
GU480921.1 Influenza A virus (A/swine/SD/31813/2009(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2375 2375 100% 0.0 96%
EU697211.1 Influenza A virus (A/turkey/North Carolina/353568/2005(H3N2)) neuraminidase (NA) gene, complete cds 2375 2375 100% 0.0 96%
EU743212.1 Influenza A virus (A/turkey/MN/366767/2005(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2375 2375 100% 0.0 96%
DQ469984.1 Influenza A virus (A/swine/Manitoba/12707/2005(H3N2)) neuraminidase (NA) gene, complete cds 2375 2375 100% 0.0 96%
DQ470000.1 Influenza A virus (A/turkey/Ontario/31232/2005(H3N2)) neuraminidase (NA) gene, complete cds 2373 2373 99% 0.0 96%
EU697206.1 Influenza A virus (A/turkey/Minnesota/366767/2005(H3N2)) neuraminidase (NA) gene, complete cds 2367 2367 100% 0.0 96%
FJ519965.1 Influenza A virus (A/swine/Minnesota/1300/2007(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2351 2351 100% 0.0 96%
FJ519962.1 Influenza A virus (A/swine/Minnesota/66960/2006(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2351 2351 100% 0.0 96%
DQ469968.1 Influenza A virus (A/swine/Alberta/14722/2005(H3N2)) neuraminidase (NA) gene, complete cds 2351 2351 100% 0.0 96%
FJ519964.1 Influenza A virus (A/swine/Minnesota/761/2007(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2343 2343 100% 0.0 95%
EU826553.2 Influenza A virus (A/mink/Nova Scotia/1055488/2007(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2343 2343 100% 0.0 95%
EU100574.1 Influenza A virus (A/Washington/27/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2331 2331 100% 0.0 95%
EU100572.1 Influenza A virus (A/New Mexico/17/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2331 2331 99% 0.0 95%
FJ410142.1 Influenza A virus (A/swine/Minnesota/1145/2007(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
EU103836.1 Influenza A virus (A/Denmark/4/2002(H3N2)) clone 4-02 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU103825.1 Influenza A virus (A/Denmark/01/2002(H3N2)) clone 1-02 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
CY013090.1 Influenza A virus (A/Waikato/25/2002(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY012026.1 Influenza A virus (A/Waikato/29/2002(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY001514.1 Influenza A virus (A/New York/58/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000075.1 Influenza A virus (A/New York/47/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY001223.1 Influenza A virus (A/New York/65/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY001114.1 Influenza A virus (A/New York/27/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY001098.1 Influenza A virus (A/New York/39/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY007733.1 Influenza A virus (A/Canterbury/56/2002(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000787.1 Influenza A virus (A/New York/46/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000523.1 Influenza A virus (A/New York/29/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000379.1 Influenza A virus (A/New York/49/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000371.1 Influenza A virus (A/New York/31/2004(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000347.1 Influenza A virus (A/New York/15/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000267.1 Influenza A virus (A/New York/53/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000179.1 Influenza A virus (A/New York/44/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000043.1 Influenza A virus (A/New York/34/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000771.1 Influenza A virus (A/New York/25/2003(H3N2)) segment 6, complete sequence 2321 2321 99% 0.0 95%
CY045569.1 Influenza A virus (A/swine/Oklahoma/008722/2007(H3N2)) segment 6 sequence 2319 2319 100% 0.0 95%
EU857214.1 Influenza A virus (A/Hong Kong/CUHK23111/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU857192.1 Influenza A virus (A/Hong Kong/CUHK21582/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100586.1 Influenza A virus (A/Arizona/32/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100576.1 Influenza A virus (A/New Mexico/23/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100563.1 Influenza A virus (A/Colorado/7/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100561.1 Influenza A virus (A/Arizona/43/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
CY022207.1 Influenza A virus (A/Auckland/614/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017525.1 Influenza A virus (A/Queensland/20/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017517.1 Influenza A virus (A/Queensland/18/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017485.1 Influenza A virus (A/Queensland/11/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY013415.1 Influenza A virus (A/Waikato/31/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY013082.1 Influenza A virus (A/Wellington/9/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012666.1 Influenza A virus (A/Wellington/49/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012642.1 Influenza A virus (A/Dunedin/3/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012090.1 Influenza A virus (A/Waikato/102/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012066.1 Influenza A virus (A/Wellington/34/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012050.1 Influenza A virus (A/Waikato/52/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY011738.1 Influenza A virus (A/Wellington/25/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY011674.1 Influenza A virus (A/Wellington/83/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY011650.1 Influenza A virus (A/Waikato/21/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008270.1 Influenza A virus (A/Canterbury/09/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008286.1 Influenza A virus (A/Canterbury/15/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008318.1 Influenza A virus (A/Canterbury/64/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%

_________________
www.twitter.com/hniman

Top 100 MP1 matches with SD5&6&7

CY073498.1 Influenza A virus (A/Frankfurt/INS304/2009(H1N1)) segment 7, complete sequence 1505 1505 100% 0.0 100%
CY087209.1 Influenza A virus (A/Texas/JMS368/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY087001.1 Influenza A virus (A/New York/3256/2009(N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY086994.1 Influenza A virus (A/New York/3251/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY086978.1 Influenza A virus (A/New York/3217/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY086970.1 Influenza A virus (A/New York/3198/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY086931.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY086915.1 Influenza A virus (A/swine/Minnesota/226128/2010(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY040718.2 Influenza A virus (A/New York/3238/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY084463.1 Influenza A virus (A/New York/6537/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083943.1 Influenza A virus (A/San Diego/INS194/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083927.1 Influenza A virus (A/Warsaw/INS148/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083911.1 Influenza A virus (A/Aalborg/INS132/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083887.1 Influenza A virus (A/San Diego/INS72/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083879.1 Influenza A virus (A/San Diego/INS50/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083847.1 Influenza A virus (A/District of Columbia/INS23/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083839.1 Influenza A virus (A/San Diego/INS14/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083831.1 Influenza A virus (A/San Diego/INS07/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083826.1 Influenza A virus (A/Wroclaw/INS435/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083818.1 Influenza A virus (A/Los Angeles/INS423/2010(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083795.1 Influenza A virus (A/Athens/INS328/2009) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083769.1 Influenza A virus (A/Athens/INS256/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083730.1 Influenza A virus (A/Bochum/INS120/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083722.1 Influenza A virus (A/District of Columbia/INS115/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083714.1 Influenza A virus (A/Madrid/INS112/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds >gb|CY088609.1| Influenza A virus (A/Athens/INS152/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds >gb|CY088614.1| Influenza A virus (A/Frankfurt/INS93/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds >gb|CY088622.1| Influenza A virus (A/Odense/INS176/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083691.1 Influenza A virus (A/Terrassa/INS94/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083678.1 Influenza A virus (A/Madrid/INS77/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083662.1 Influenza A virus (A/San Diego/INS41/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083656.1 Influenza A virus (A/San Diego/INS36/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083648.1 Influenza A virus (A/District of Columbia/INS22/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083640.1 Influenza A virus (A/San Diego/INS13/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083618.1 Influenza A virus (A/Lima/WRAIR9202F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083578.1 Influenza A virus (A/Lima/WRAIR8648F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083570.1 Influenza A virus (A/Lima/WRAIR8511F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083562.1 Influenza A virus (A/Budapest/WRAIR2411N/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083546.1 Influenza A virus (A/Budapest/WRAIR2393N/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083522.1 Influenza A virus (A/Lima/WRAIR1695P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083514.1 Influenza A virus (A/Piura/WRAIR1694P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083498.1 Influenza A virus (A/Chicago/WRAIR1691P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083490.1 Influenza A virus (A/Mexico City/WRAIR1691N/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083450.1 Influenza A virus (A/Mexico City/WRAIR1679N/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083426.1 Influenza A virus (A/San Diego/WRAIR1667P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083418.1 Influenza A virus (A/San Diego/WRAIR1666P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083394.1 Influenza A virus (A/San Diego/WRAIR1663P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083386.1 Influenza A virus (A/San Diego/WRAIR1662P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083378.1 Influenza A virus (A/Pendleton/WRAIR1661P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083362.1 Influenza A virus (A/San Diego/WRAIR1658P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083347.1 Influenza A virus (A/San Diego/WRAIR1656P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083323.1 Influenza A virus (A/Great Lakes/WRAIR1652P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083315.1 Influenza A virus (A/San Diego/WRAIR1649P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083267.1 Influenza A virus (A/San Diego/WRAIR1643P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083259.1 Influenza A virus (A/San Diego/WRAIR1642P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083243.1 Influenza A virus (A/Virginia/WRAIR1511P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083227.1 Influenza A virus (A/California/WRAIR1507P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083195.1 Influenza A virus (A/California/WRAIR1502P/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083147.1 Influenza A virus (A/Bishkek/WRAIR0883N/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083139.1 Influenza A virus (A/Lima/WRAIR0681F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083107.1 Influenza A virus (A/Piura/WRAIR0603F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083099.1 Influenza A virus (A/Lima/WRAIR0519F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY083051.1 Influenza A virus (A/Lima/WRAIR0285F/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY081568.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY080427.1 Influenza A virus (A/swine/VIC/09-02767-01/2009(H1N1)) segment 7 sequence 1497 1497 100% 0.0 99%
HQ239621.1 Influenza A virus (A/Canada-NB/RV0005-10/2009(H1N1)) segment 7 matrix protein 2 (M2) gene, partial cds; and matrix protein 1 (M1) gene, complete cds 1497 1497 100% 0.0 99%
CY080345.1 Influenza A virus (A/Cambodia/NHRCC00011/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY080326.1 Influenza A virus (A/Thailand/CU-H1786/2010(H1N1)) segment 7 sequence 1497 1497 100% 0.0 99%
HQ840322.1 Influenza A virus (A/swine/Minnesota/165A/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ840314.1 Influenza A virus (A/swine/Minnesota/136B/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ840301.1 Influenza A virus (A/swine/Minnesota/130A/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ840293.1 Influenza A virus (A/swine/Minnesota/074A/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ728113.1 Influenza A virus (A/swine/Taiwan/CH-1204/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ728105.1 Influenza A virus (A/swine/Taiwan/PT-1204/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ661365.1 Influenza A virus (A/Russia/01-MA/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY076719.1 Influenza A virus (A/ferret/Washington/WADDL13230/2009(H1N1)) segment 7 sequence 1497 1497 100% 0.0 99%
CY075867.1 Influenza A virus (A/swine/Argentina/CIP051-StaFeN2/2010(H1N2)) segment 7 sequence 1497 1497 100% 0.0 99%
HQ393496.1 Influenza A virus (A/swine/Taiwan/TD-2542/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY075637.1 Influenza A virus (A/Boston/703/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075629.1 Influenza A virus (A/Boston/701/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075621.1 Influenza A virus (A/Boston/698/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075613.1 Influenza A virus (A/Boston/682/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075597.1 Influenza A virus (A/Boston/672/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075573.1 Influenza A virus (A/Boston/658/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075557.1 Influenza A virus (A/Boston/653/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075549.1 Influenza A virus (A/Boston/648/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075525.1 Influenza A virus (A/Boston/606/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075517.1 Influenza A virus (A/Boston/602/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075509.1 Influenza A virus (A/Boston/595/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075493.1 Influenza A virus (A/Boston/584/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
HQ291551.1 Influenza A virus (A/swine/IL/27486-2/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ291548.1 Influenza A virus (A/swine/IL/27486-1/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ291542.1 Influenza A virus (A/swine/IL/25399-3/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ291536.1 Influenza A virus (A/swine/MO/23881/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
CY075396.1 Influenza A virus (A/Chile/3766/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075356.1 Influenza A virus (A/Chile/3375/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
CY075348.1 Influenza A virus (A/Chile/3369/2009(H1N1)) segment 7, complete sequence 1497 1497 100% 0.0 99%
HQ214453.1 Influenza A virus (A/Kenya/0027/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ214452.1 Influenza A virus (A/Kenya/0026/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ214451.1 Influenza A virus (A/Kenya/0013/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ214450.1 Influenza A virus (A/Kenya/0048/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ214446.1 Influenza A virus (A/Kenya/0028/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%
HQ214443.1 Influenza A virus (A/Kenya/0002/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1497 1497 100% 0.0 99%

_________________
www.twitter.com/hniman

Gs and I had a chat recently about his concern that pandemic H1N1 (***flu) will reassort with swine flu and become the next pandemic.

We thought we should share the chat and encourage anyone with questions, comments, opinions, etc. to share them.

gsgs [10:23]: talk about H1 ?
mixin [10:23]: sure
gsgs [10:23]: much reassortment in swine
gsgs [10:23]: including ***flu
mixin[10:23]: we should be worried?
gsgs [10:23]: ***flu reasorts with swineflu
gsgs [10:24]: well, swineflu did reassort before
gsgs [10:24]: but now we have the Eurasian segments included
gsgs [10:24]: and it's easily transported over continents
gsgs [10:24]: by humans
gsgs [10:25]: no longer Eurasian and American swine viruses
gsgs [10:25]: quarantine of swine no longer works
gsgs [10:25]: because they get human (***flu) viruses and then reassort
gsgs [10:26]: we are immune meanwhile to swine-H1
mixin[10:26]: what segments are reassorted?
gsgs [10:26]: via ***flu
gsgs [10:26]: but NOT to
gsgs [10:26]: European swine H1
gsgs [10:27]: which went from birds to swine in 1978 in Europe
gsgs [10:27]: and then frequently occurred in Europe and Asia, but not America
gsgs [10:27]: quarantine worked
gsgs [10:27]: now we have already 2 of these European segments in ***flu
gsgs [10:28]: (segments 6 and 7)
gsgs [10:28]: and it exists since 1978 in Eurasia, but didn't jump to humans
gsgs [10:28]: so , why now ?
gsgs [10:28]: becaue it reassorts with the other swine strains
gsgs [10:29]: which are already in humans
gsgs [10:29]: and swine
gsgs [10:29]: this may enhance European swine H1 's capability to reassort and jump to humans
gsgs [10:30]: then we get European H1 (Avian(1978))
gsgs [10:30]: to which we have no immunity
gsgs [10:31]: I think, it was already in humans occasionally
gsgs [10:31]: European,Asian swine workers, swine farmers
gsgs [10:31]: and AFAIK it is not so virulent
gsgs [10:31]: but still
gsgs [10:32]: I do see pandemic danger from Eurasian swine H1
mixin[10:32]: do you think mexico has a reassorted strain?
gsgs [10:32]: yes
gsgs [10:32]: this was established in May 2009
gsgs [10:32]: remember ?
gsgs [10:33]: 123458 from triple-reassortant American swine
mixin[10:33]: I mean whatever is going around now... is it a different strain?
gsgs [10:33]: and 67 from Eurasian swine
gsgs [10:33]: not in humans
gsgs [10:33]: not the public sequences
gsgs [10:33]: maybe in Chihuahua
gsgs [10:34]: i make it 20%
gsgs [10:34]: but it may happen again, later, in Asia
mixin[10:34]: Isn't our vax still good as long as HA stays basically the same?
gsgs [10:34]: yes
gsgs [10:35]: but not against Eurasian HA
gsgs [10:35]: our vax and more important : our immunity
mixin [10:35]: but as long as HA doesn't reassort, we are OK?
gsgs [10:35]: almost
gsgs [10:36]: reassortment is usually enhanced virus evolution
gsgs [10:36]: getting more "features" more quickly
gsgs [10:37]: transmission,survival,entering other sorts of cells,virulence
gsgs [10:37]: it's not just immunity and HA
gsgs [10:37]: NA,MP also play some role in immunty, though smaller than HA
gsgs [10:38]: but as for a new pandemic, we should concentrate on HA
mixin[10:38]: About your 20%.. there's a 20% chance that a new pandemic will start soon?
gsgs [10:39]: no, 20% that chihuahuaflu has reassorted
gsgs [10:39]: with non***flu-segments
mixin [10:39]: it is a bit strange that they haven't released many sequences
gsgs [10:39]: probably not in HA
gsgs [10:40]: well, they already did test HA and NA
gsgs [10:40]: uploaded to genbank
gsgs [10:40]: I don't know whether they did test other segments
mixin [10:40]: No H1 sequences at Gisaid for a week
mixin [10:41]: unless there is some since yesterday
gsgs [10:41]: so, what about European swinish H1-HA ?
mixin [10:41]: I didn't look
gsgs [10:41]: that seems to be the biggest danger now
gsgs [10:41]: what do you think about the danger
gsgs [10:41]: my explanation
gsgs [10:42]: should we post about it
gsgs [10:42]: reformulate
gsgs [10:42]: with links
mixin [10:42]: I'm not sure what to think; but I always trust your opinion
gsgs [10:42]: did you see it elsewhere
mixin [10:42]: no
gsgs [10:42]: ask other experts whether they agree
gsgs [10:43]: it should be discussed now
gsgs [10:43]: IMO
mixin [10:45]: so what now has you more worried than before?
gsgs [10:46]: frequent reassortment in swine
gsgs [10:46]: involving ***flu

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no patents on genes, publish the GISAID sequences !

As`posted previously, the 20% probabilty of reassortment in Chihuahua is utter nonsense as is comments that there are no new H1 sequences at GISAID. The CDC released a LARGE series of 2011 H1N1 sequences from the US including FULL sequences from novel H1N1 isolates (PA/02/2011 and MD/04/2011) which are in addition to TX.03/10. None of the three sets of full sequneces have any reassortment. Similarly, I noted that the severe cases in the US had no reassortment.

Please stop posting utter nonsense. The release of 2011 sequences by the CDC at GISAID has been posted.

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www.twitter.com/hniman