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niman
PostPosted: Mon Mar 26, 2012 6:21 pm 
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Posts: 27555
Location: Pittsburgh, PA USA
niman wrote:
Query 1381 AAGAACCTTTACGATAAGGTCAGAGTACAGCCTAAGGATAACGGAAAAGATTTGGGGAAC 1440
JN807989 1381 ............................................................ 1440
JN807991 1381 ...........................................C......G.....T... 1440
JN807976 1381 ........................C......T.........T.C......G.....T... 1440

The above set of sequences provides additional evidence for recombination. As seen above, the first three poymorphisms in the above segment are shared by the "89" (eagle owl) and "91" (sparrowhawk) sequences. However, the next three newly acquire polymorphisms are only found in the "89" (eagle owl) sequence. This clustering once again signals recombination.

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niman
PostPosted: Mon Mar 26, 2012 6:40 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27555
Location: Pittsburgh, PA USA
niman wrote:
C1509T

JN807991.1 Influenza A virus (A/eurasian sparrowhawk/Korea/Q94/2011(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
JN807985.1 Influenza A virus (A/duck/Korea/Cheonan/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807977.1 Influenza A virus (A/chicken/Korea/Asan90/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY107849.1 Influenza A virus (A/duck/Germany/R1789/2008(H5N3)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB677937.1 Influenza A virus (A/duck/Mongolia/195/2011(H5N3)) viral cRNA, segment 4, complete sequence 28.2 28.2 100% 1.7 100%
AB677936.1 Influenza A virus (A/duck/Mongolia/194/2011(H5N3)) viral cRNA, segment 4, complete sequence 28.2 28.2 100% 1.7 100%
JN807866.1 Influenza A virus (A/quail/Egypt/1171SG/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807819.1 Influenza A virus (A/chicken/Egypt/1174S/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807792.1 Influenza A virus (A/chicken/Egypt/10259SF/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY081026.1 Influenza A virus (A/chicken/Vietnam/1/2010(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
FR771825.1 Influenza A virus (A/spur-winged goose/Nigeria/226/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
FR771824.1 Influenza A virus (A/spur-winged goose/Nigeria/210/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
FR771823.1 Influenza A virus (A/spur-winged goose/Nigeria/2/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
GU083661.1 Influenza A virus (A/chicken/West Bengal/170564/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU050428.1 Influenza A virus (A/duck/Ha Tinh/07-53/2007(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM172454.1 Influenza A virus (A/bar-headed goose/Qinghai/3/2005(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849027.1 Influenza A virus (A/mallard/PT/28006/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849026.1 Influenza A virus (A/mallard/PT/28003/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849029.1 Influenza A virus (A/mallard/PT/37369/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ478333.1 Influenza A virus (A/crow/Assam/142119/2008(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU953291.1 Influenza A virus (A/greylag goose/Central Kazakhstan/3735/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU953290.1 Influenza A virus (A/greylag goose/Central Kazakhstan/3733/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU811743.1 Influenza A virus (A/goose/Egypt/0912smg-NLQP/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU046782.1 Influenza A virus (A/swan/Bavaria/15/2007(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046742.1 Influenza A virus (A/mallard/Bavaria/40/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046740.1 Influenza A virus (A/mallard/Bavaria/39/2006(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046738.1 Influenza A virus (A/mallard/Bavaria/38/2006(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046737.1 Influenza A virus (A/mallard/Bavaria/37/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046734.1 Influenza A virus (A/mallard/Bavaria/35/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU228595.1 Influenza A virus (A/garganey/Crimea/97/2008(H5N2)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GQ917231.1 Influenza A virus (A/chicken/India/WB-NIV92456/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ917227.1 Influenza A virus (A/chicken/India/WB-NIV16924/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ184240.1 Influenza A virus (A/duck/Egypt/0891-NLQP/2008(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY041298.1 Influenza A virus (A/chicken/Egypt/0891/2008(H5N1)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
FJ785143.1 Influenza A virus (A/duck/Tulcea/RO-AI-LPAI/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB450566.1 Influenza A virus (A/quail/Nakhon Pathom/NIAH7562/2005(H5N1)) HA gene for hemagglutinin, complete cds 28.2 28.2 100% 1.7 100%
CY034758.1 Influenza A virus (A/mallard/Italy/4223-2/2006(H5N2)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
EF624256.1 Influenza A virus (A/China/2006(H5N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
EU118136.1 Influenza A virus (A/chicken/Vietnam/TY31/2005(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY022645.1 Influenza A virus (A/teal/Italy/3812/2005(H5N3)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
EF541398.1 Influenza A virus (A/duck/Viet Nam/342/2001(H5N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
CY017059.1 Influenza A virus (A/chicken/Viet Nam/17/2005(H5N1)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
DQ864718.1 Influenza A virus (A/chicken/Krasnodar/199/06(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
DQ838509.1 Influenza A virus (A/teal/Italy/3812/2005(H5N3)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
DQ497703.1 Influenza A virus (A/chicken/Vietnam/398/2005(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB241620.1 Influenza A virus (A/duck/Hokkaido/447/00(H5N3)) HA mRNA for hemagglutinin, partial cds 28.2 28.2 100% 1.7 100%
AB241619.1 Influenza A virus (A/duck/Hokkaido/69/00(H5N3)) HA mRNA for hemagglutinin, partial cds 28.2 28.2 100% 1.7 100%

EPI358505 A/Turkey/Netherlands/12005852/2012 (A/H5) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI356413 A/wild duck/Germany-BY/R2892/2009 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI354764 A/duck/Bulgaria/Shishmanzi-26/11 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI354763 A/duck/Bulgaria/Shishmanzi-25/11 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI354762 A/duck/Bulgaria/Shishmanzi-23/11 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI353349 A/duck/Germany/R1789/2008 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI346524 A/whooper swan/Germany-HE/R535/2009 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI341765 A/duck/Mongolia/194/2011 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI341764 A/duck/Mongolia/195/2011 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI340156 A/chicken/Egypt/10259SF/2010 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI340129 A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI340082 A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI313923 A/chicken/Vietnam/1/2010 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI309084 A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI309083 A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI309082 A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI287574 A/chicken/West Bengal/170564/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI286387 A/duck/Ha Tinh/07-53/2007 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI284584 A/ostrich/Vietnam/NCVD-373/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI284535 A/duck/Vietnam/NCVD-372/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI275702 A/bar-headed goose/Qinghai/3/2005 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI272809 A/mallard/PT/28006/2007 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI272807 A/mallard/PT/28003/2007 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI272805 A/mallard/PT/37369/2007 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI257228 A/Anas platyrhynchos/09-884/2008 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI257220 A/Anas platyrhynchos/Belgium/09-762-P1/2008 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI255774 A/crow/Assam/142119/2008 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI250083 A/greylag goose/Central Kazakhstan/3735/2009 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI250082 A/greylag goose/Central Kazakhstan/3733/2009 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI246379 A/wild duck/Germany/R2892/09 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI246011 A/goose/Egypt/0912smg-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI244110 A/goose/Germany/R3160/09 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237642 A/swan/Bavaria/15/2007 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237602 A/mallard/Bavaria/40/2006 (A/H5) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237600 A/mallard/Bavaria/39/2006 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237598 A/mallard/Bavaria/38/2006 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237597 A/mallard/Bavaria/37/2006 (A/H5) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI237594 A/mallard/Bavaria/35/2006 (A/H5) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI224609 A/China/2006 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI223130 A/Anas platyrhynchos/Belgium/09-272/2008 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI223127 A/goose/Belgium/19432/2008 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI222868 A/teal/Crimea/97/2008 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI219317 A/chicken/India/WB-NIV92456/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI219315 A/chicken/India/WB-NIV16924/2009 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI214909 A/duck/Tulcea/RO-AI-LPAI/2009 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI210043 A/chicken/Krasnodar/199/06 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI182354 A/duck/Egypt/0891-NLQP/2008 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI182001 A/chicken/Egypt/0891/2008 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI167140 A/quail/Nakhon Pathom/NIAH7562/2005 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI164818 A/mallard/Italy/4223-2/2006 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI160412 A/duck/Vietnam/NCVD-54/07 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI160404 A/duck/Vietnam/NCVD-53/07 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI123404 A/chicken/Vietnam/TY31/2005 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI116495 A/duck/Viet Nam/342/2001 (A/H5N2) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI106412 A/chicken/Krasnodar/199/06 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI106181 A/teal/Italy/3812/2005 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI104884 A/chicken/Vietnam/398/2005 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI63239 A/teal/Italy/3812/2005 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI47770 A/chicken/Viet Nam/17/2005 (A/H5N1) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI1340 A/duck/Hokkaido/447/2000 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)
EPI1338 A/duck/Hokkaido/69/2000 (A/H5N3) segment 4 (HA) 27.0 7.775786e+00 14/14 (100%)

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niman
PostPosted: Mon Mar 26, 2012 8:59 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27555
Location: Pittsburgh, PA USA
C1509T
JN807991.1 Influenza A virus (A/eurasian sparrowhawk/Korea/Q94/2011(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
JN807985.1 Influenza A virus (A/duck/Korea/Cheonan/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807977.1 Influenza A virus (A/chicken/Korea/Asan90/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY107849.1 Influenza A virus (A/duck/Germany/R1789/2008(H5N3)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB677937.1 Influenza A virus (A/duck/Mongolia/195/2011(H5N3)) viral cRNA, segment 4, complete sequence 28.2 28.2 100% 1.7 100%
AB677936.1 Influenza A virus (A/duck/Mongolia/194/2011(H5N3)) viral cRNA, segment 4, complete sequence 28.2 28.2 100% 1.7 100%
JN807866.1 Influenza A virus (A/quail/Egypt/1171SG/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807819.1 Influenza A virus (A/chicken/Egypt/1174S/2011(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
JN807792.1 Influenza A virus (A/chicken/Egypt/10259SF/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY081026.1 Influenza A virus (A/chicken/Vietnam/1/2010(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
FR771825.1 Influenza A virus (A/spur-winged goose/Nigeria/226/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
FR771824.1 Influenza A virus (A/spur-winged goose/Nigeria/210/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
FR771823.1 Influenza A virus (A/spur-winged goose/Nigeria/2/2008(H5N2)) partial HA gene for hemagglutinin, genomic RNA 28.2 28.2 100% 1.7 100%
GU083661.1 Influenza A virus (A/chicken/West Bengal/170564/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU050428.1 Influenza A virus (A/duck/Ha Tinh/07-53/2007(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM172454.1 Influenza A virus (A/bar-headed goose/Qinghai/3/2005(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849027.1 Influenza A virus (A/mallard/PT/28006/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849026.1 Influenza A virus (A/mallard/PT/28003/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
HM849029.1 Influenza A virus (A/mallard/PT/37369/2007(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ478333.1 Influenza A virus (A/crow/Assam/142119/2008(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU953291.1 Influenza A virus (A/greylag goose/Central Kazakhstan/3735/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU953290.1 Influenza A virus (A/greylag goose/Central Kazakhstan/3733/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU811743.1 Influenza A virus (A/goose/Egypt/0912smg-NLQP/2009(H5N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GU046782.1 Influenza A virus (A/swan/Bavaria/15/2007(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046742.1 Influenza A virus (A/mallard/Bavaria/40/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046740.1 Influenza A virus (A/mallard/Bavaria/39/2006(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046738.1 Influenza A virus (A/mallard/Bavaria/38/2006(H5N3)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046737.1 Influenza A virus (A/mallard/Bavaria/37/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU046734.1 Influenza A virus (A/mallard/Bavaria/35/2006(H5)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GU228595.1 Influenza A virus (A/garganey/Crimea/97/2008(H5N2)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
GQ917231.1 Influenza A virus (A/chicken/India/WB-NIV92456/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ917227.1 Influenza A virus (A/chicken/India/WB-NIV16924/2009(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
GQ184240.1 Influenza A virus (A/duck/Egypt/0891-NLQP/2008(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY041298.1 Influenza A virus (A/chicken/Egypt/0891/2008(H5N1)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
FJ785143.1 Influenza A virus (A/duck/Tulcea/RO-AI-LPAI/2009(H5N3)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB450566.1 Influenza A virus (A/quail/Nakhon Pathom/NIAH7562/2005(H5N1)) HA gene for hemagglutinin, complete cds 28.2 28.2 100% 1.7 100%
CY034758.1 Influenza A virus (A/mallard/Italy/4223-2/2006(H5N2)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
EF624256.1 Influenza A virus (A/China/2006(H5N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
EU118136.1 Influenza A virus (A/chicken/Vietnam/TY31/2005(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.7 100%
CY022645.1 Influenza A virus (A/teal/Italy/3812/2005(H5N3)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
EF541398.1 Influenza A virus (A/duck/Viet Nam/342/2001(H5N2)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
CY017059.1 Influenza A virus (A/chicken/Viet Nam/17/2005(H5N1)) segment 4, complete sequence 28.2 28.2 100% 1.7 100%
DQ864718.1 Influenza A virus (A/chicken/Krasnodar/199/06(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
DQ838509.1 Influenza A virus (A/teal/Italy/3812/2005(H5N3)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
DQ497703.1 Influenza A virus (A/chicken/Vietnam/398/2005(H5N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.7 100%
AB241620.1 Influenza A virus (A/duck/Hokkaido/447/00(H5N3)) HA mRNA for hemagglutinin, partial cds 28.2 28.2 100% 1.7 100%
AB241619.1 Influenza A virus (A/duck/Hokkaido/69/00(H5N3)) HA mRNA for hemagglutinin, partial cds 28.2 28.2 100% 1.7 100%

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