Rhiza Labs FluTracker Forum

The place to discuss the flu
It is currently Thu May 23, 2013 7:33 am

All times are UTC - 5 hours [ DST ]




Post new topic Reply to topic  [ 11 posts ]  Go to page 1, 2  Next
Author Message
PostPosted: Fri Jun 01, 2012 6:24 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Recently released 2012 H1N1pdm09 sequences (by CDC at GISAID) from Maryland and New York have H274Y and are closely related to prior sequences from Mexico, Texas, Illinois, California.

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Fri Jun 01, 2012 6:33 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Top 100 Maryland NA matches (identical to Texas, Mexico, and Illinois)
EPI372992 A/Maryland/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI370415 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI370412 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI370409 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI368650 A/Texas/29/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366336 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366333 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366331 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366295 A/Mexico/2440/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366289 A/Mexico/1818/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI366298 A/Mexico/689/2012 (A/H1N1 pdm09) segment 6 (NA) 2601.2 0.000000e+00 1409/1410 (99%)
EPI372551 A/Massachusetts/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370427 A/Utah/11/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370424 A/Colorado/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370418 A/Texas/35/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370394 A/Texas/31/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370391 A/Texas/34/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI368681 A/Idaho/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI368663 A/Washington/19/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI368427 A/Georgia/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI366286 A/Mexico/1474/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI362987 A/Washington/15/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI362960 A/Kansas/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI358140 A/Utah/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357964 A/Utah/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357958 A/Maryland/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357955 A/New Mexico/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357952 A/Wisconsin/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357941 A/Mexico/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357932 A/Wisconsin/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI357489 A/Paris/196/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI356258 A/Missouri/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353425 A/Texas/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353407 A/Mexico/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353404 A/Mexico/3720/2011 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353398 A/Maine/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353390 A/Colorado/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI353384 A/Alabama/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI370430 A/Alaska/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2595.7 0.000000e+00 1408/1410 (99%)
EPI372989 A/New York/10/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI372986 A/New York/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI372538 A/New Hampshire/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370434 A/Louisiana/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370426 A/Georgia/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370422 A/Alabama/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370388 A/Texas/33/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI368685 A/Georgia/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI368654 A/Texas/30/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI368642 A/Texas/26/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI368456 A/Florida/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366328 A/Texas/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366292 A/Mexico/239/2011 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI362978 A/Texas/22/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI358147 A/Tennessee/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI358143 A/Missouri/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI357973 A/Texas/21/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI357938 A/Mexico/430/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI357935 A/Nebraska/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI356264 A/California/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI356261 A/Idaho/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI353436 A/Mexico/3723/2011 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI352601 A/Texas/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI352302 A/Grenoble/1772/2011 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI349357 A/Pennsylvania/16/2011 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI357929 A/Georgia/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2590.1 0.000000e+00 1407/1410 (99%)
EPI356273 A/Delaware/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2590.1 0.000000e+00 1407/1410 (99%)
EPI353387 A/California/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2590.1 0.000000e+00 1407/1410 (99%)
EPI372531 A/Ohio/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370432 A/Virginia/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370406 A/Texas/27/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370385 A/California/21/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369844 A/Mexico/InDRE3740/2011 (A/H1N1) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368679 A/Nevada/11/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368676 A/Wyoming/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368438 A/Kansas/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362993 A/North Dakota/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362990 A/Guatemala/18/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362984 A/Michigan/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI359689 A/Mexico/254/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI356270 A/North Carolina/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI355256 A/Mexico/InDRE1474/2012 (A/H1N1) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353442 A/Mexico/254/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353422 A/Texas/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353410 A/Mexico/56/2011 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353401 A/Mexico/210/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362966 A/North Dakota/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2584.6 0.000000e+00 1406/1410 (99%)
EPI362954 A/Kentucky/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2584.6 0.000000e+00 1406/1410 (99%)
EPI356282 A/Texas/18/2012 (A/H1N1 pdm09) segment 6 (NA) 2584.6 0.000000e+00 1406/1410 (99%)
EPI372541 A/California/25/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368688 A/Tennessee/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368436 A/North Carolina/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368429 A/South Carolina/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI362972 A/Oklahoma/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI358134 A/North Carolina/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI357944 A/Nevada/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI372544 A/Oregon/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368673 A/Rhode Island/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368443 A/Maine/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI362981 A/New York/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI356279 A/Utah/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Fri Jun 01, 2012 6:42 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Two isolates from New York (A/New York/09/2012 and A/New York/10/2012) have H274Y and are closely related to NA from Mexico, Texas, Illinois, Maryland).

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Fri Jun 01, 2012 6:42 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Top 100 NA matches

EPI372986 A/New York/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI372992 A/Maryland/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI372989 A/New York/10/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370415 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370412 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI370409 A/Illinois/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI368650 A/Texas/29/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366336 A/Texas/24/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366333 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366331 A/Texas/23/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366295 A/Mexico/2440/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366289 A/Mexico/1818/2012 (A/H1N1 pdm09) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI366298 A/Mexico/689/2012 (A/H1N1 pdm09) segment 6 (NA) 2590.1 0.000000e+00 1407/1410 (99%)
EPI372551 A/Massachusetts/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370427 A/Utah/11/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370424 A/Colorado/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370418 A/Texas/35/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370394 A/Texas/31/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370391 A/Texas/34/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368681 A/Idaho/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368663 A/Washington/19/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI368427 A/Georgia/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI366286 A/Mexico/1474/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362987 A/Washington/15/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI362960 A/Kansas/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI358140 A/Utah/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357964 A/Utah/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357958 A/Maryland/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357955 A/New Mexico/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357952 A/Wisconsin/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357941 A/Mexico/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357932 A/Wisconsin/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI357489 A/Paris/196/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI356258 A/Missouri/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353425 A/Texas/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353407 A/Mexico/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353404 A/Mexico/3720/2011 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353398 A/Maine/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353390 A/Colorado/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI353384 A/Alabama/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI370430 A/Alaska/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2584.6 0.000000e+00 1406/1410 (99%)
EPI356282 A/Texas/18/2012 (A/H1N1 pdm09) segment 6 (NA) 2584.6 0.000000e+00 1406/1410 (99%)
EPI372538 A/New Hampshire/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI370434 A/Louisiana/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI370426 A/Georgia/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI370422 A/Alabama/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI370388 A/Texas/33/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368685 A/Georgia/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368654 A/Texas/30/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368642 A/Texas/26/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368456 A/Florida/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI366328 A/Texas/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI366292 A/Mexico/239/2011 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI362978 A/Texas/22/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI358147 A/Tennessee/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI358143 A/Missouri/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI357973 A/Texas/21/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI357938 A/Mexico/430/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI357935 A/Nebraska/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI356264 A/California/12/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI356261 A/Idaho/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI353436 A/Mexico/3723/2011 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI352601 A/Texas/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI352302 A/Grenoble/1772/2011 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI349357 A/Pennsylvania/16/2011 (A/H1N1 pdm09) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI357929 A/Georgia/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI356273 A/Delaware/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI353387 A/California/52/2011 (A/H1N1 pdm09) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI372531 A/Ohio/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI370432 A/Virginia/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI370406 A/Texas/27/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI370385 A/California/21/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369844 A/Mexico/InDRE3740/2011 (A/H1N1) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368679 A/Nevada/11/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368676 A/Wyoming/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368438 A/Kansas/07/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI362993 A/North Dakota/02/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI362990 A/Guatemala/18/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI362984 A/Michigan/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI359689 A/Mexico/254/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI356270 A/North Carolina/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI355256 A/Mexico/InDRE1474/2012 (A/H1N1) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI353442 A/Mexico/254/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI353422 A/Texas/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI353410 A/Mexico/56/2011 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI353401 A/Mexico/210/2012 (A/H1N1 pdm09) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI362966 A/North Dakota/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2573.5 0.000000e+00 1404/1410 (99%)
EPI362954 A/Kentucky/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2573.5 0.000000e+00 1404/1410 (99%)
EPI372541 A/California/25/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI368688 A/Tennessee/05/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI368436 A/North Carolina/09/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI368429 A/South Carolina/08/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI362972 A/Oklahoma/01/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI358134 A/North Carolina/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI357944 A/Nevada/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI372544 A/Oregon/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI368673 A/Rhode Island/04/2012 (A/H1N1 pdm09) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI368443 A/Maine/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI362981 A/New York/03/2012 (A/H1N1 pdm09) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI356279 A/Utah/06/2012 (A/H1N1 pdm09) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Sat Jun 02, 2012 10:38 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Collection date:

2012-03-08
Host

Human
Additional host information:


Zip code:


Patient status:


Last vaccinated:


In-vivo pathogenicity test:


Location:

United States / Maryland
Additional location information:


Patient age:

13 Year(s)
Gender:

Female
Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
Maryland Department of Health and Mental Hygiene
Sample ID given by the sample provider:

A12048807
Address:
Maryland Department of Health and Mental Hygiene
201 W Preston St Room 4C3
Baltimore, 21201
United States


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012783619
Authors:

Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Unspecified Genotype Phenotype
Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Resistant
Zanamivir:

Sensitive
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:

A/CALIFORNIA/07/2009-LIKE (H1N1)pdm09
Note:


Sequence

segment identifier length accession # INSDC Sequence
HA 2012783619_216075_v1_4 1701 EPI372993
NA 2012783619_216075_v1_6 1410 EPI372992
MP 2012783619_216075_v1_7 982 EPI372991

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Sat Jun 02, 2012 10:39 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Isolate name:

A/New York/10/2012

Isolate ID:

EPI_ISL_120298
Passage details/history:

C2
Type:

A / H1N1
Lineage:
pdm09


Sample information

Collection date:

2012-03-27
Host

Human
Additional host information:


Zip code:


Patient status:


Last vaccinated:


In-vivo pathogenicity test:


Location:

United States / New York
Additional location information:


Patient age:


Gender:


Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
New York State Department of Health
Sample ID given by the sample provider:

4924 ORIGINAL
Address:
New York State Department of Health
Wadsworth Center-David Axelrod Institute 120 New Scotland Ave
Albany, 12208
United States


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012786111
Authors:

Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Unspecified Genotype Phenotype
Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Resistant
Zanamivir:

Sensitive
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:

A/CALIFORNIA/07/2009-LIKE (H1N1)pdm09
Note:


Sequence

segment identifier length accession # INSDC Sequence
HA 2012786111_216467_v1_4 1701 EPI372990
NA 2012786111_216467_v1_6 1410 EPI372989
MP 2012786111_216467_v1_7 982 EPI372988

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Sat Jun 02, 2012 10:42 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Isolate name:

A/New York/09/2012

Isolate ID:

EPI_ISL_120297
Passage details/history:

C2
Type:

A / H1N1
Lineage:
pdm09


Sample information

Collection date:

2012-03-16
Host

Human
Additional host information:


Zip code:


Patient status:


Last vaccinated:


In-vivo pathogenicity test:


Location:

United States / New York
Additional location information:


Patient age:


Gender:


Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
New York State Department of Health
Sample ID given by the sample provider:

4900 ORIGINAL
Address:
New York State Department of Health
Wadsworth Center-David Axelrod Institute 120 New Scotland Ave
Albany, 12208
United States


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012786110
Authors:

Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Unspecified Genotype Phenotype
Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Resistant
Zanamivir:

Sensitive
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:

A/CALIFORNIA/07/2009-LIKE (H1N1)pdm09
Note:


Sequence

segment identifier length accession # INSDC Sequence
HA 2012786110_216466_v1_4 1701 EPI372987
NA 2012786110_216466_v1_6 1410 EPI372986
MP 2012786110_216466_v1_7 982 EPI372985

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Sat Jun 02, 2012 11:47 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
Hong Kong health authorities on Saturday urged the public not to panic after the southern Chinese city reported its first human case of bird flu in 18 months in a two-year-old boy.

Officials said the Chinese boy was in serious condition after testing positive for the deadly H5N1 strain of avian influenza and the city had raised the bird flu alert level to "serious''.

Hong Kong and Chinese health authorities said investigations revealed that the boy, who lives in the neighbouring province of Guangdong, had visited a local wet market and had contact with a live duck in mid-May.

He later developed a fever and runny nose and was taken for treatment at a Hong Kong private clinic on May 26.

"The boy's parents are all along asymptomatic, which means the chance of a human-to-human transmission is slim,'' a spokesman from the Hong Kong Centre for Health Protection said in a statement.

The spokesman said the boy was in intensive care while his parents were being quarantined at the same hospital.

A government spokeswoman confirmed it was the first human case of bird flu in Hong Kong since November 2010, which involved a 59-year-old woman.

China's state-run Xinhua news agency said Guangdong was on "high alert'' but tests has so far found no signs of an outbreak.

Hong Kong is particularly nervous about infectious diseases after an outbreak of the deadly respiratory disease SARS in 2003 killed 300 people in the city.

The Asian financial hub was the site of the world's first major outbreak of bird flu among humans in 1997, when six people died from a mutated form of the virus, which is normally confined to poultry. Millions of birds were then culled.

The latest infection prompted Hong Kong Health Minister York Chow to convene an emergency meeting as he announced a series of preventive measures while reassuring the public that it was an "isolated'' case.

"We feel that there is no need for panic among Hong Kong citizens,'' he told reporters.

Chow said there were no plans to ban live poultry imports for the time being, but inspection and disinfection would be stepped up at markets. Schools and various institutions have been asked to be on alert.

"We think it is an important measure to take particularly for Hong Kong, because we had experiences of outbreaks of avian influenza in Hong Kong,'' he said.

"For this particular case, so far the chance of it being spread to other humans is relatively low. But we still need to go through the whole process of analysing the origin and channel of the infection and have to study the virology of the virus.''

The H5N1 strain has killed more than 350 people worldwide since 2003, according to WHO statistics, with the latest fatality reported on Monday involving a 10-year-old Cambodian girl.

Concerns about avian influenza have risen in the region with China, Vietnam and Indonesia all reporting deaths from the virus this year.

The virus typically spreads from birds to humans through direct contact, but experts fear it could mutate into a form easily transmissible between humans, with the potential to kill millions in a pandemic.

http://www.bangkokpost.com/breakingnews ... s-bird-flu

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Mon Jun 11, 2012 1:57 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
The names of isolates A/New York/09/2012 and A/New York/10/2012 have been changed to Texas/48/2012 and A/Texas/49/2012.

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Mon Jun 11, 2012 2:02 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27416
Location: Pittsburgh, PA USA
niman wrote:
Isolate name:

A/New York/09/2012

Isolate ID:

EPI_ISL_120297
Passage details/history:

C2
Type:

A / H1N1
Lineage:
pdm09


Sample information

Collection date:

2012-03-16
Host

Human
Additional host information:


Zip code:


Patient status:


Last vaccinated:


In-vivo pathogenicity test:


Location:

United States / New York
Additional location information:


Patient age:


Gender:


Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
New York State Department of Health
Sample ID given by the sample provider:

4900 ORIGINAL
Address:
New York State Department of Health
Wadsworth Center-David Axelrod Institute 120 New Scotland Ave
Albany, 12208
United States


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012786110
Authors:

Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Unspecified Genotype Phenotype
Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Resistant
Zanamivir:

Sensitive
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:

A/CALIFORNIA/07/2009-LIKE (H1N1)pdm09
Note:


Sequence

segment identifier length accession # INSDC Sequence
HA 2012786110_216466_v1_4 1701 EPI372987
NA 2012786110_216466_v1_6 1410 EPI372986
MP 2012786110_216466_v1_7 982 EPI372985

Isolate name:

A/Texas/49/2012

Isolate ID:

EPI_ISL_120298
Passage details/history:

C2
Type:

A / H1N1
Lineage:
pdm09


Sample information

Collection date:

2012-03-27
Host

Human
Additional host information:


Zip code:


Patient status:


Last vaccinated:


In-vivo pathogenicity test:


Location:

United States / Texas
Additional location information:


Patient age:


Gender:


Outbreak:


Treatment:


Specimen source:




Institute information

Originating lab:
New York State Department of Health
Sample ID given by the sample provider:

4924 ORIGINAL
Address:
New York State Department of Health
Wadsworth Center-David Axelrod Institute 120 New Scotland Ave
Albany, 12208
United States


Submitting lab:
Centers for Disease Control and Prevention
Sample ID given by the submitting laboratory:

2012786111
Authors:

Address:
Centers for Disease Control and Prevention
WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
1600 Clifton Road, N.E.
Atlanta, GA 30333
United States


Publication
Publication


In vivo antiviral resistance

Unspecified Genotype Phenotype
Antiviral resistance tested by unknown method
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown


Antiviral resistance tested by sequence prediction
Adamantanes:

Unknown
Oseltamivir:

Unknown
Zanamivir:

Unknown
Peramivir:

Unknown
Other:

Unknown

Antiviral resistance tested by experimental procedures
Adamantanes:

Unknown
Oseltamivir:

Resistant
Zanamivir:

Sensitive
Peramivir:

Unknown
Other:

Unknown

Additional information
Antigenic characterization:

A/CALIFORNIA/07/2009-LIKE (H1N1)pdm09
Note:


Sequence

segment identifier length accession # INSDC Sequence
HA 2012786111_216467_v1_4 1701 EPI372990
NA 2012786111_216467_v1_6 1410 EPI372989
MP 2012786111_216467_v1_7 982 EPI372988

_________________
www.twitter.com/hniman


Top
 Profile  
 
Display posts from previous:  Sort by  
Post new topic Reply to topic  [ 11 posts ]  Go to page 1, 2  Next

All times are UTC - 5 hours [ DST ]


Who is online

Users browsing this forum: gsgs, niman and 91 guests


You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
Powered by phpBB® Forum Software © phpBB Group