Rhiza Labs FluTracker Forum

WV/06 also has a segment 7 that is very unusual for humans.
It must have gone to swine in 2009 already and evolved in Swine
since then, until it jumped to some humans in fall 2011 (IO,ME,WV)

                                                   c c       (c=Cancun-mutations)
                                              00000000000000
                                              01234456677889
                                              40723920769687
                                              52045280983636
-codon-position-------------------------------        1 1211
---Index--------------------------------------CAGGTGAGGTCAGA
   1 >A/Mexflu/index/2009/02/01               ..............

   2 >A/Sw/IO/A01049478/2011/01/27            .....A.AA.....
   3 >A/Sw/Quebec/1257774/2010/11/09          .....A.A.....-
   4 >A/Sw/OH/FAH10-1/2010,2010/10/01,H1N2    .....A.A....A.
   5 >A/Sw/Quebec/1257777/2010/11/08          ....CA.A------
   6 >A/Sw/IO/A01202709/2011,2011/10/19,H3N2  .G..CA.A....A.
   8 >A/Sw/IO/A01049525/2011/02/08            .G.A.A.A......
   9 >A/PA/09/2011/08/20                      .G.A.A.A.....G
  10 >A/PA/11/2011/08/25                      .G.A.A.A.....G
  11 >A/PA/10/2011/08/26                      .G.A----------
  12 >A/PA/10b/2011                           .G.A----------
  13 >A/IN/08_a/2011/07/27                    .G.A.A.A...G.G
  14 >A/IN/08_b/2011/07/27                    .G.A.A.A...G.-

  15 >A/IN/10/2011/10/22                      A.....GA..A...
  16 >A/Sw/IO/A01202640/2011,2011/09/30,H3N2  A.....GA..A...
  17 >A/Sw/NY/A01104005/2011/09/13            A.....GA......
  18 >A/Sw/IL/A01201606/2011,2011/06/01,H3N2  A.....GA......
  19 >A/WI/28/2011,2011/12/01,H1N1            AG....GT......
  20 >A/IO/07(f3)/2011/11/14(H3N2)            A.A...G.AC...-
  21 >A/IO/08(m1)/2011/11/14(H3N2)            A.A...G.AC....
  22 >A/IO/09(m2)/2011/11/14(H3N2)            A.A...G.AC....
  23 >A/ME/06/2011/10/10                      A.A...G.AC....
  24 >A/WV/06/2011/11/21                      A.A...G.AC....
                                                                    
---Index--------------------------------------CAGGTGAGGTCAGA
-codon-position-------------------------------        1 1211
                                              00000000000000
                                              01234456677889
                                              40723920769687
                                              52045280983636

_________________
no patents on genes, publish the GISAID sequences !

all mexflu segments 7 from genbank that are

H3N2, or H1N2, or non-Cancun-swine

                                                       00000000000000000000000000000000000
                                                       00000000001123335556666666677778889
                                                       02244456670770122440046778822691220
                                                       73515675656409548360950191969836354
-codon-position----------------------------------------1212 1 2  1            21 2   1 1 1
---Index-----------------------------------------------CAATCCCCCGAAGCAGAGTGGAGGGTAGATCCTTG
   1 >A/Mexflu/index/2009/02/01                        ...................................
   2 >A/Sw/ALB/OTH-33-21/2009,2009/05/05,H1N1          ...................................
   3 >A/Sw/THA/CU-RA15/2010,2010/01/,H1N1              ...................................
   4 >A/Sw/THA/CU-RA4/2009,2009/11/,H1N1               ...................................
   5 >A/SW/SK/12-71/2009,2009/07/20,H1N1               ...................................
   6 >A/Sw/ALB/OTH-33-14/2009,2009/05/05,H1N1          ...................................
  56 >A/Sw/IL/35572/2009,2009/12/16,H1N1               ...................................
  57 >A/Sw/THA/CU-SA43/2010,2010/02/,H1N1              .................A.................
  63 >A/Sw/Quebec/1267568/2010,2010/12/30,H3N2         ...................................
  64 >A/Sw/THA/CU-RA29/2009,2009/12/,H1N1              ...............................T...
  37 >A/Sw/THA/CU-RA114/2010,2010/01/,H1N1             ...............................T...
  38 >A/Sw/THA/CU-RA9/2009,2009/11/,H1N1               ...................................
  39 >A/Sw/ALB/OTH-33-1/2009,2009/05/03,H1N1           ..........................G........
  40 >A/Sw/ALB/OTH-33-3/2009,2009/05/03,H1N1           ..........................G........
  41 >A/Sw/ALB/OTH-33-2/2009,2009/05/03,H1N1           ...................................
  42 >A/Sw/ALB/OTH-33-25/2009,2009/05/02,H1N1          ..................................A
  43 >A/Sw/ALB/OTH-33-7/2009,2009/05/05,H1N1           ..................................A
  44 >A/Sw/ALB/OTH-33-8/2009,2009//,H1N1               ...................................
  45 >A/Sw/ALB/OTH-33-23/2009,2009/05/03,H1N1          ...................................
  46 >A/Sw/ALB/OTH-33-24/2009,2009/05/03,H1N1          ...................................
  36 >A/Sw/THA/CU-RA75/2010,2010/01/,H1N1              ...................................
  35 >A/Sw/ALB/OTH-33-22/2009,2009/05/05,H1N1          ................G..................
  55 >A/Sw/4/Mexico/2009,2009/04/,H1N1                 ..............G....................

   7 >A/Sw/MB/31/2009,2009/09/18,H1N1                  ....A..............................
   8 >A/Sw/MB/22/2009,2009/08/17,H1N1                  ....A..............................
  11 >A/Sw/MB/46/2009,2009/11/02,H1N1                  ....A..............................
  12 >A/Sw/MB/54/2009,2009/11/15,H1N1                  ....A..............................
  13 >A/Sw/MN/25618/2011,2011/02/10,H1N1               ....A..............................
   9 >A/Sw/MB/32-2/2009,2009/09/18,H1N1                ....A......G.......................
  10 >A/Sw/MB/36/2009,2009/10/06,H1N1                  ....A......G.......................
  14 >A/Sw/IO/A01049755/2011,2011/03/28,H1N2           ....A...........G..A...............
  15 >A/Sw/IO/A01049765/2011,2011/03/29,H1N2           ....A...........G..A...............
  16 >A/Sw/IO/A01049766/2011,2011/03/29,H1N2           ....A...........G..A...............
  17 >A/Sw/IO/A01202033/2011,2011/05/27,H1N1           ....A...........G..A...............
  18 >A/Sw/IO/A01202034/2011,2011/05/27,H1N1           ....A...........G..A...............
  19 >A/Sw/NY/A01104005/2011,2011/09/13,H3N2           ....A...........G..A...............
  20 >A/IN/10/2011,2011/10/22,H3N2                     ....A...........G..A..........A....
  21 >A/IN/10/2011,2011/10/22,H3N2                     ....A...........G..A..........A....
  22 >A/IN/10/2011,2011/10/22,H3N2                     -...A...........G..A..........A....
  23 >A/Sw/IO/A01202640/2011,2011/09/30,H3N2           ....A...........G..A..........A....
  24 >A/Sw/IL/A01201606/2011,2011/06/01,H3N2           ....A...........G..A...............
  25 >A/ME/07/2011,2011/10/24,H3N2                     -------.....A...-------------------
  26 >A/IO/07/2011,2011/11/14,H3N2                     ....A.......A...G.......A....C.....
  27 >A/IO/07/2011,2011/11/14,H3N2                     -...A.......A...G.......A....C.....
  28 >A/IO/08/2011,2011/11/14,H3N2                     -...A.......A...G.......A....C.....
  29 >A/IO/08/2011,2011/11/14,H3N2                     ....A.......A...G.......A....C.....
  30 >A/IO/09/2011,2011/11/14,H3N2                     -...A.......A...G.......A....C.....
  31 >A/IO/09/2011,2011/11/14,H3N2                     ....A.......A...G.......A....C.....
  32 >A/ME/06/2011,2011/10/10,H3N2                     -...A.......A...G.......A....C.....
  33 >A/Sw/IO/A01049970/2011,2011/05/16,H1N2           ....A.......A...G.......A....C.....
  34 >A/WV/06/2011,2011/11/21,H3N2                     -...A.......A...G.......A....C.....

  47 >A/Sw/Costa Rica/000125-16/2010,2010/11/01,H1N1   ...............A.....G.A...........
  52 >A/Sw/Costa Rica/000125-15/2010,2010/11/01,H1N1   ...............A.....G.A...........
  48 >A/Sw/Costa Rica/000125-3/2010,2010/11/01,H1N1    ...............A.....G.A...........
  49 >A/Sw/Costa Rica/000125-14/2010,2010/11/01,H1N1   T..............A.....G.A...........
  50 >A/Sw/Costa Rica/000125-19/2010,2010/11/01,H1N1   T..............A.....G.A...........
  51 >A/Sw/Costa Rica/000125-20/2010,2010/11/01,H1N1   T..............A.....G.A...........
  67 >A/Sw/THA/CU-PL65/2010,2010/11/,H1N1              T..............A.....G...A......CC.
  53 >A/Sw/THA/CU-PL63/2010,2010/11/,H1N1              ...............A.........A......C..
  54 >A/Sw/MN/A01049101/2010,2010/11/17,H1N1           ...........G..GA.........C.........
  58 >A/Sw/IO/A01049003/2010,2010/11/15,H1N1           ....A....A...T.............A.......
  59 >A/Sw/IO/A01049004/2010,2010/11/15,H1N1           ....A....A...T.............A.......
  60 >A/Sw/THA/CU-SA432/2010,2010/04/,H1N1             ............T.....A.A.A.....G......
  61 >A/Sw/THA/CU-SA412/2010,2010/04/,H1N1             ............T.....A.A.A.....G....C.
  62 >A/Sw/THA/CU-SA433/2010,2010/06/,H1N1             ............T.....A.A.A.....G......
  65 >A/Sw/La Habana/130/2010,2010/11/01,H1N1          .GGG.AAGT.C........................
  66 >A/Sw/Pinar del Rio/3/2010,2010/11/01,H1N1        .GGG.AAGT.C......A.................
                                                                                          
---Index-----------------------------------------------CAATCCCCCGAAGCAGAGTGGAGGGTAGATCCTTG
-codon-position----------------------------------------1212 1 2  1            21 2   1 1 1
                                                       00000000000000000000000000000000000
                                                       00000000001123335556666666677778889
                                                       02244456670770122440046778822691220
                                                       73515675656409548360950191969836354
                                                                                          
.
.

.
.


we have 4 North American lineages here:
(only talking about segment 7, (which went from mexflu into H3N2v) )

1.) Alberta May,2009 - died
2.) Manitoba, August 2009 (C45A) - this may well be the only
North American introduction into swine and thus the Ancestor of 3.) and 4.)
3.) Iowa,March 2011 (C45A,A528G,G600A) seen in October in a human in Indiana
This strangely has one of the Cancun mutations but not the other.
Which I think is coincidence, independently created, although synonymous.
You may see an indication for recombination here.
Well, if you can show more such things, I'll consider it ...
4.) Iowa,Maine,West Virginia fall 2011 (C45A,G270A,A528G,G679A,T768C)
Earliest appearance was in a H1N2-swine in Iowa, May 2011.
It has A528G as 3.) indicating a probable common ancestor in ~2010


these mutations do not appear in human mexflu-lineages

_________________
no patents on genes, publish the GISAID sequences !

sometimes I may forget what was already written here.
You can just ignore it.
If you consider that already annoying .... then what with those repeated
travel-logs that fill entire pages in these threads ?
which I do consider annoying since it makes it hard to find the discussion inbetween

> 16 days apart, indicating the contact was NOT infected by the index case (which means
> they were infected by DIFFERENT sources).

no, just that there was maybe another human inbetween or it was from a fomite.
The sequences are still very similar indicating just one introduction from swine.

"ILI" doesn't mean H3N2v and CDC seems not to think the 23 cases had H3N2v either
But even if, it won't change much. Just one daycarecenter.

The "thousands of cases" are just your speculation. "Concluded" from ILI and bad testing.

_________________
no patents on genes, publish the GISAID sequences !

It is NOT unsual. In fact it is the most COMMON. There are 12 human H3N2v cases with an H1N1pdm09 M gene and SEVEN of the 12 have the M gene listed above. Moreover it is in 3 of the 5 states with confirmed cases, and five of the seven (the five most recent) are in cases with NO swine exposure which form HUMAN CLUSTERS (i.e. clear human to human transmission).

Even the CDC, with their "swine exposure" nonsense for PA and IN cases abandoned that nonsense after the Iowa cluster was confirmed, and they sent out warnings to all 50 states after the CONFIRMED West Virgina cluster with TWENTY THREE ILI cases in contacts was under investigation.

They KNOW H3N2 is WIDESPEAD in humans and testing is ABYSMAL because the tests rely on cross reactivity with seasonal H3 and H1N1pdm09 NP, which produces FALSE NEGATIVES (as do rapid tests).

_________________
www.twitter.com/hniman

You are living in fantasy world. which is DEVOID of logic. You ask the same questions on the same thread.

Your arguments against the TWENTY THREE cases of ILI is ABSURD. The CDC cited the TWENTY THREE cases in its WARNING sent to all 50 states. The CDC KNOWS that the TWENTY THREE cases of ILI were TWENTY THREE cases of H3N2v.

GO AWAY.

There are many boards that accept your fanatasies. They are NOT welcome here. They are WELL beyond annoying.

_________________
www.twitter.com/hniman

Flu-Like Illness In 23 Contacts of West Virginia H3N2v Cluster
Recombinomics Commentary 05:00
January 5, 2012

More recently, investigation of a case in West Virginia has identified a possible outbreak, with 23 out of 70 contacts of the case reporting ILI; all have recovered.

The above comments are in the California Department of Public Health December 15 H3N2v advisory. The West Virginia cluster was described in the CDC early release MMWR, but the 23 ILI cases were not mentioned. Instead the report said there were several contacts of the index case.......

http://www.recombinomics.com/News/01051 ... LI_23.html

_________________
www.twitter.com/hniman

New USDA swine sequences through November 2011 fail to identify additional matches. Swine H3n2v matches with human cases remains at 2 (NY and IA October collections).

_________________
www.twitter.com/hniman

Another Ohio H1N2 swine matching PB1, NA, MP in 2011 H3N2v discussed at thread below

viewtopic.php?f=5&t=8105

_________________
www.twitter.com/hniman

new H3N2v in genbank

segments
1 3 56 8 A/Sw/IL/A01049952/2011(H1N2)
     6   A/Sw/IL/A00907653/2011(H1N2)
1 3 56 8 A/Sw/IL/A01049968/2011(H1N2)
 23      A/Sw/IL/A01049905/2011(H1N1)
     6   A/Sw/IL/A01076121/2010(H1N2)
     6   A/Sw/IL/A01201527/2011(H1N2)
     6   A/Sw/IL/A01201107/2011(H1N2)
12   6   A/Sw/IN/A01049953/2011(H1N2)
123 56 8 A/Sw/IN/A01049964/2011(H1N2)
      7  A/Sw/IN/A01243255/2012(H1N1)
      7  A/Sw/IN/A01243254/2012(H1N1)
123 5678 A/Sw/IO/A01049970/2011(H1N2)
 2       A/Sw/MN/A01049893/2011(H1N1)
     6   A/Sw/MN/A01076123/2010(H1N2)
     6   A/Sw/MN/A01076122/2010(H1N2)

_________________
no patents on genes, publish the GISAID sequences !

JN652506 Swine 4 H1N1 USA 2011/04/27 1701 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JN652540 Swine 6 H1N1 USA 2011/04/27 1410 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JN652575 Swine 7 H1N1 USA 2011/04/27 982 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX042518 Swine 4 H1N2 USA 2011/07/29 915 Influenza A virus (A/swine/Illinois/A00907653/2011(H1N2)) p
JX048031 Swine 6 H1N2 USA 2011/07/29 1410 Influenza A virus (A/swine/Illinois/A00907653/2011(H1N2)) c
JX042519 Swine 4 H1N1 USA 2010/12/30 1701 Influenza A virus (A/swine/Illinois/A01047800/2010(H1N1)) c
JX048032 Swine 6 H1N1 USA 2010/12/30 1394 Influenza A virus (A/swine/Illinois/A01047800/2010(H1N1)) p
JX045953 Swine 1 H1N1 USA 2011/04/27 2280 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX045954 Swine 2 H1N1 USA 2011/04/27 2274 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX045955 Swine 3 H1N1 USA 2011/04/27 2151 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX045956 Swine 5 H1N1 USA 2011/04/27 1497 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX045957 Swine 8 H1N1 USA 2011/04/27 838 Influenza A virus (A/swine/Illinois/A01049905/2011(H1N1)) c
JX045963 Swine 1 H1N2 USA 2011/05/09 2280 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JX045964 Swine 2 H1N2 USA 2011/05/09 2274 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JX045965 Swine 3 H1N2 USA 2011/05/09 2151 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JN652515 Swine 4 H1N2 USA 2011/05/09 1698 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JX045966 Swine 5 H1N2 USA 2011/05/09 1497 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JN652549 Swine 6 H1N2 USA 2011/05/09 1410 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JN652583 Swine 7 H1N2 USA 2011/05/09 982 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JX045967 Swine 8 H1N2 USA 2011/05/09 838 Influenza A virus (A/swine/Illinois/A01049952/2011(H1N2)) c
JX045978 Swine 1 H1N2 USA 2011/05/11 2280 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045979 Swine 2 H1N2 USA 2011/05/11 2274 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045980 Swine 3 H1N2 USA 2011/05/11 2151 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045981 Swine 4 H1N2 USA 2011/05/11 1698 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045982 Swine 5 H1N2 USA 2011/05/11 1497 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JN652554 Swine 6 H1N2 USA 2011/05/11 1410 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JN652588 Swine 7 H1N2 USA 2011/05/11 982 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045983 Swine 8 H1N2 USA 2011/05/11 838 Influenza A virus (A/swine/Illinois/A01049968/2011(H1N2)) c
JX045989 Swine 1 H1N1 USA 2011/05/17 2280 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JX045990 Swine 2 H1N1 USA 2011/05/17 2274 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JX045991 Swine 3 H1N1 USA 2011/05/17 2151 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JN863540 Swine 4 H1N1 USA 2011/05/17 1701 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JX045992 Swine 5 H1N1 USA 2011/05/17 1497 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JN863547 Swine 6 H1N1 USA 2011/05/17 1410 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JN863561 Swine 7 H1N1 USA 2011/05/17 982 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JX045993 Swine 8 H1N1 USA 2011/05/17 898 Influenza A virus (A/swine/Illinois/A01049980/2011(H1N1)) c
JX045994 Swine 1 H1N1 USA 2011/05/17 2280 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX045995 Swine 2 H1N1 USA 2011/05/17 2274 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX045996 Swine 3 H1N1 USA 2011/05/17 2151 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX045997 Swine 4 H1N1 USA 2011/05/17 1701 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX045998 Swine 5 H1N1 USA 2011/05/17 1497 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JN863548 Swine 6 H1N1 USA 2011/05/17 1410 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JN863562 Swine 7 H1N1 USA 2011/05/17 982 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX045999 Swine 8 H1N1 USA 2011/05/17 838 Influenza A virus (A/swine/Illinois/A01049981/2011(H1N1)) c
JX042521 Swine 4 H1N1 USA 2010/07/13 1701 Influenza A virus (A/swine/Illinois/A01076118/2010(H1N1)) c
JX048034 Swine 6 H1N1 USA 2010/07/13 876 Influenza A virus (A/swine/Illinois/A01076118/2010(H1N1)) p
JX048035 Swine 6 H1N2 USA 2010/07/13 1410 Influenza A virus (A/swine/Illinois/A01076121/2010(H1N2)) c
JX042553 Swine 4 H1N1 USA 2009/12/06 1701 Influenza A virus (A/swine/Illinois/A01076179/2009(H1N1)) c
JX042539 Swine 4 H1N2 USA 2010/09/27 1360 Influenza A virus (A/swine/Illinois/A01076361/2010(H1N2)) p
JX048049 Swine 6 H1N2 USA 2010/09/27 1410 Influenza A virus (A/swine/Illinois/A01076361/2010(H1N2)) c
JX042543 Swine 4 H3N2 USA 2010/11/01 1693 Influenza A virus (A/swine/Illinois/A01076709/2010(H3N2)) p
JX048053 Swine 6 H3N2 USA 2010/11/01 1410 Influenza A virus (A/swine/Illinois/A01076709/2010(H3N2)) c
JX042544 Swine 4 H3N2 USA 2010/11/01 1698 Influenza A virus (A/swine/Illinois/A01076724/2010(H3N2)) nc
JX048054 Swine 6 H3N2 USA 2010/11/01 1410 Influenza A virus (A/swine/Illinois/A01076724/2010(H3N2)) c
JX042545 Swine 4 H3N2 USA 2010/11/01 1697 Influenza A virus (A/swine/Illinois/A01076730/2010(H3N2)) p
JX048055 Swine 6 H3N2 USA 2010/11/01 1410 Influenza A virus (A/swine/Illinois/A01076730/2010(H3N2)) c
JX042546 Swine 4 H3N2 USA 2010/11/01 1696 Influenza A virus (A/swine/Illinois/A01076735/2010(H3N2)) p
JX048056 Swine 6 H3N2 USA 2010/11/01 1410 Influenza A virus (A/swine/Illinois/A01076735/2010(H3N2)) c
JX042547 Swine 4 H3N2 USA 2010/10/26 1698 Influenza A virus (A/swine/Illinois/A01076768/2010(H3N2)) nc
JX048057 Swine 6 H3N2 USA 2010/10/26 1410 Influenza A virus (A/swine/Illinois/A01076768/2010(H3N2)) c
JX042550 Swine 4 H1N2 USA 2011/04/13 1691 Influenza A virus (A/swine/Illinois/A01201107/2011(H1N2)) p
JX048062 Swine 6 H1N2 USA 2011/04/13 1410 Influenza A virus (A/swine/Illinois/A01201107/2011(H1N2)) c
JX042551 Swine 4 H1N2 USA 2011/05/26 900 Influenza A virus (A/swine/Illinois/A01201527/2011(H1N2)) p
JX048063 Swine 6 H1N2 USA 2011/05/26 1410 Influenza A virus (A/swine/Illinois/A01201527/2011(H1N2)) c
JX042552 Swine 4 H3N2 USA 2011/06/07 899 Influenza A virus (A/swine/Illinois/A01201633/2011(H3N2)) p
JX048064 Swine 6 H3N2 USA 2011/06/07 1410 Influenza A virus (A/swine/Illinois/A01201633/2011(H3N2)) c
JX045968 Swine 1 H1N2 USA 2011/05/07 2280 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JX045969 Swine 2 H1N2 USA 2011/05/07 2274 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JX045970 Swine 3 H1N2 USA 2011/05/07 2151 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JN652516 Swine 4 H1N2 USA 2011/05/07 1698 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JX045971 Swine 5 H1N2 USA 2011/05/07 1497 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JN652550 Swine 6 H1N2 USA 2011/05/07 1410 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JN652584 Swine 7 H1N2 USA 2011/05/07 982 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JX045972 Swine 8 H1N2 USA 2011/05/07 838 Influenza A virus (A/swine/Indiana/A01049953/2011(H1N2)) c
JX045973 Swine 1 H1N2 USA 2011/05/11 2280 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JX045974 Swine 2 H1N2 USA 2011/05/11 2274 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JX045975 Swine 3 H1N2 USA 2011/05/11 2151 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JN652518 Swine 4 H1N2 USA 2011/05/11 1698 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JX045976 Swine 5 H1N2 USA 2011/05/11 1497 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JN652552 Swine 6 H1N2 USA 2011/05/11 1410 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JN652586 Swine 7 H1N2 USA 2011/05/11 982 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JX045977 Swine 8 H1N2 USA 2011/05/11 838 Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) c
JX042531 Swine 4 H1N1 USA 2010/02/28 1701 Influenza A virus (A/swine/Indiana/A01076195/2010(H1N1)) c
JX030377 Swine 4 H1N1 USA 2012/03/14 1701 Influenza A virus (A/swine/Indiana/A01203255/2012(H1N1)) c
JX030376 Swine 4 H1N1 USA 2012/03/14 1701 Influenza A virus (A/swine/Indiana/A01243254/2012(H1N1)) c
JX030378 Swine 6 H1N1 USA 2012/03/14 1410 Influenza A virus (A/swine/Indiana/A01243254/2012(H1N1)) c
JX030380 Swine 7 H1N1 USA 2012/03/14 982 Influenza A virus (A/swine/Indiana/A01243254/2012(H1N1)) c
JX030379 Swine 6 H1N1 USA 2012/03/14 1410 Influenza A virus (A/swine/Indiana/A01243255/2012(H1N1)) c
JX030381 Swine 7 H1N1 USA 2012/03/14 982 Influenza A virus (A/swine/Indiana/A01243255/2012(H1N1)) c
JX045948 Swine 1 H1N1 USA 2011/04/26 2280 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JX045949 Swine 2 H1N1 USA 2011/04/26 2274 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JX045950 Swine 3 H1N1 USA 2011/04/26 2151 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JN652505 Swine 4 H1N1 USA 2011/04/26 1701 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JX045951 Swine 5 H1N1 USA 2011/04/26 1497 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JN652538 Swine 6 H1N1 USA 2011/04/26 1410 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JN652573 Swine 7 H1N1 USA 2011/04/26 982 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JX045952 Swine 8 H1N1 USA 2011/04/26 838 Influenza A virus (A/swine/Iowa/A01049894/2011(H1N1)) c
JX045958 Swine 1 H1N1 USA 2011/05/06 2280 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JX045959 Swine 2 H1N1 USA 2011/05/06 2274 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JX045960 Swine 3 H1N1 USA 2011/05/06 2151 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JN652513 Swine 4 H1N1 USA 2011/05/06 1701 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JX045961 Swine 5 H1N1 USA 2011/05/06 1497 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JN652547 Swine 6 H1N1 USA 2011/05/06 1410 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JN652581 Swine 7 H1N1 USA 2011/05/06 982 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JX045962 Swine 8 H1N1 USA 2011/05/06 838 Influenza A virus (A/swine/Iowa/A01049950/2011(H1N1)) c
JX045984 Swine 1 H1N2 USA 2011/05/16 2232 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JX045985 Swine 2 H1N2 USA 2011/05/16 2274 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JX045986 Swine 3 H1N2 USA 2011/05/16 2151 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JQ398777 Swine 4 H1N2 USA 2011/05/16 1698 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JX045987 Swine 5 H1N2 USA 2011/05/16 1497 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JN863546 Swine 6 H1N2 USA 2011/05/16 1410 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JN863560 Swine 7 H1N2 USA 2011/05/16 982 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JX045988 Swine 8 H1N2 USA 2011/05/16 838 Influenza A virus (A/swine/Iowa/A01049970/2011(H1N2)) c
JX042523 Swine 4 H1N1 USA 2009/11/01 1701 Influenza A virus (A/swine/Iowa/A01076170/2009(H1N1)) c
JX048039 Swine 6 H1N1 USA 2009/11/01 1386 Influenza A virus (A/swine/Iowa/A01076170/2009(H1N1)) p
JX042524 Swine 4 H1N1 USA 2009/11/22 1701 Influenza A virus (A/swine/Iowa/A01076174/2009(H1N1)) c
JX042527 Swine 4 H1N1 USA 2010/01/10 1701 Influenza A virus (A/swine/Iowa/A01076187/2010(H1N1)) c
JX042538 Swine 4 H3N2 USA 2010/09/20 1670 Influenza A virus (A/swine/Iowa/A01076309/2010(H3N2)) p
JX048048 Swine 6 H3N2 USA 2010/09/20 1410 Influenza A virus (A/swine/Iowa/A01076309/2010(H3N2)) c
JX042540 Swine 4 H3N2 USA 2010/10/04 1692 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) p
JX048050 Swine 6 H3N2 USA 2010/10/04 1410 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX042541 Swine 4 H3N2 USA 2010/10/04 1698 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) nc
JX048051 Swine 6 H3N2 USA 2010/10/04 1410 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX046000 Swine 1 H1N1 USA 2011/05/26 2280 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JX046001 Swine 2 H1N1 USA 2011/05/26 2274 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JX046002 Swine 3 H1N1 USA 2011/05/26 2151 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JN863541 Swine 4 H1N1 USA 2011/05/26 1701 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JX046003 Swine 5 H1N1 USA 2011/05/26 1497 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JN863549 Swine 6 H1N1 USA 2011/05/26 1410 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JN863563 Swine 7 H1N1 USA 2011/05/26 982 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JX046004 Swine 8 H1N1 USA 2011/05/26 838 Influenza A virus (A/swine/Iowa/A01202023/2011(H1N1)) c
JX045943 Swine 1 H1N1 USA 2011/04/26 2280 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JX045944 Swine 2 H1N1 USA 2011/04/26 2274 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JX045945 Swine 3 H1N1 USA 2011/04/26 2151 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JN652504 Swine 4 H1N1 USA 2011/04/26 1701 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JX045946 Swine 5 H1N1 USA 2011/04/26 1497 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JN652537 Swine 6 H1N1 USA 2011/04/26 1410 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JN652572 Swine 7 H1N1 USA 2011/04/26 982 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JX045947 Swine 8 H1N1 USA 2011/04/26 838 Influenza A virus (A/swine/Minnesota/A01049893/2011(H1N1)) c
JX042520 Swine 4 H1N1 USA 2010/07/06 1701 Influenza A virus (A/swine/Minnesota/A01076112/2010(H1N1)) c
JX048033 Swine 6 H1N1 USA 2010/07/06 994 Influenza A virus (A/swine/Minnesota/A01076112/2010(H1N1)) p
JX048036 Swine 6 H1N2 USA 2010/07/25 1410 Influenza A virus (A/swine/Minnesota/A01076122/2010(H1N2)) c
JX048037 Swine 6 H1N2 USA 2010/07/25 1410 Influenza A virus (A/swine/Minnesota/A01076123/2010(H1N2)) c
JX042526 Swine 4 H1N1 USA 2009/12/06 1701 Influenza A virus (A/swine/Minnesota/A01076180/2009(H1N1)) c
JX048041 Swine 6 H1N1 USA 2009/12/06 1399 Influenza A virus (A/swine/Minnesota/A01076180/2009(H1N1)) p
JX042530 Swine 4 H3N2 USA 2010/02/14 1698 Influenza A virus (A/swine/Minnesota/A01076193/2010(H3N2)) nc
JX042532 Swine 4 H1N2 USA 2010/03/07 1698 Influenza A virus (A/swine/Minnesota/A01076197/2010(H1N2)) c
JX042536 Swine 4 H1N1 USA 2010/04/25 1701 Influenza A virus (A/swine/Minnesota/A01076207/2010(H1N1)) c
JX042542 Swine 4 H3N2 USA 2010/10/07 1691 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) p
JX048052 Swine 6 H3N2 USA 2010/10/07 1410 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX048058 Swine 6 H1N1 USA 2010/10/19 1410 Influenza A virus (A/swine/Minnesota/A01134594/2010(H1N1)) c
JX042548 Swine 4 H1N1 USA 2010/10/19 1701 Influenza A virus (A/swine/Minnesota/A01134596/2010(H1N1)) c
JX048059 Swine 6 H1N1 USA 2010/10/19 1410 Influenza A virus (A/swine/Minnesota/A01134596/2010(H1N1)) c
JX048060 Swine 6 H1N1 USA 2011/03/18 1410 Influenza A virus (A/swine/Minnesota/A01134843/2011(H1N1)) c
JX042528 Swine 4 H1N1 USA 2010/01/24 1701 Influenza A virus (A/swine/Minnestoa/A01076188/2010(H1N1)) c
JX048042 Swine 6 H1N1 USA 2010/01/24 1393 Influenza A virus (A/swine/Minnestoa/A01076188/2010(H1N1)) p
JX042525 Swine 4 H1N1 USA 2009/11/29 1701 Influenza A virus (A/swine/North Carolina/A01076176/2009(H1N1)) c
JX048040 Swine 6 H1N1 USA 2009/11/29 1388 Influenza A virus (A/swine/North Carolina/A01076176/2009(H1N1)) p
JX042529 Swine 4 H1N1 USA 2010/01/31 1701 Influenza A virus (A/swine/North Carolina/A01076189/2010(H1N1)) c
JX048043 Swine 6 H1N1 USA 2010/01/31 1407 Influenza A virus (A/swine/North Carolina/A01076189/2010(H1N1)) nc
JX042533 Swine 4 H1N1 USA 2010/03/14 1701 Influenza A virus (A/swine/North Carolina/A01076198/2010(H1N1)) c
JX048044 Swine 6 H1N1 USA 2010/03/14 1405 Influenza A virus (A/swine/North Carolina/A01076198/2010(H1N1)) p
JX042534 Swine 4 H1N2 USA 2010/03/28 1698 Influenza A virus (A/swine/North Carolina/A01076202/2010(H1N2)) c
JX048045 Swine 6 H1N2 USA 2010/03/28 1410 Influenza A virus (A/swine/North Carolina/A01076202/2010(H1N2)) c
JX042535 Swine 4 H1N2 USA 2010/04/18 1698 Influenza A virus (A/swine/North Carolina/A01076206/2010(H1N2)) c
JX048046 Swine 6 H1N2 USA 2010/04/18 1410 Influenza A virus (A/swine/North Carolina/A01076206/2010(H1N2)) c
JX042537 Swine 4 H1N1 USA 2010/06/13 1701 Influenza A virus (A/swine/North Carolina/A01076211/2010(H1N1)) c
JX048047 Swine 6 H1N1 USA 2010/06/13 1373 Influenza A virus (A/swine/North Carolina/A01076211/2010(H1N1)) p
JX042522 Swine 4 H1N1 USA 2009/11/01 1701 Influenza A virus (A/swine/Oklahoma/A01076169/2009(H1N1)) c
JX048038 Swine 6 H1N1 USA 2009/11/01 1384 Influenza A virus (A/swine/Oklahoma/A01076169/2009(H1N1)) p
JX042549 Swine 4 H1N1 USA 2011/03/24 1701 Influenza A virus (A/swine/Oklahoma/A01134901/2011(H1N1)) c
JX048061 Swine 6 H1N1 USA 2011/03/24 1407 Influenza A virus (A/swine/Oklahoma/A01134901/2011(H1N1)) nc

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