Rhiza Labs FluTracker Forum

The recently released (by St Jude at Genbank) avian H5N1 sequences from Egypt include extensive recombination with seasonal H1N1 and as well as reassortment with pandemic H1N1 recombined with seasonal H3N2.

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Top 100 PB2 matches at Genbank
FR687270.1 Influenza A virus (A/chicken/Egypt/Q1182/2010(H5N1)) segment 1, complete segment 4174 4174 100% 0.0 100%
HQ664706.1 Influenza A virus (A/Taiwan/14/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3258 3258 100% 0.0 91%
CY076792.1 Influenza A virus (A/Ontario/156785/2009(H1N1)) segment 1 sequence 3258 3258 100% 0.0 91%
CY076784.1 Influenza A virus (A/Ontario/152846/2009(H1N1)) segment 1 sequence 3258 3258 100% 0.0 91%
CY076776.1 Influenza A virus (A/Ontario/152439/2009(H1N1)) segment 1 sequence 3258 3258 100% 0.0 91%
CY076760.1 Influenza A virus (A/Ontario/147265/2009(H1N1)) segment 1 sequence 3258 3258 100% 0.0 91%
CY045967.1 Influenza A virus (A/Toronto/T5362/2009(H1N1)) segment 1 sequence 3258 3258 100% 0.0 91%
HQ728099.1 Influenza A virus (A/swine/Taiwan/PT-1204/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3254 3254 100% 0.0 91%
HQ728091.1 Influenza A virus (A/swine/Taiwan/HL-1125/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3254 3254 100% 0.0 91%
CY060747.1 Influenza A virus (A/Ontario/9739/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
CY060739.1 Influenza A virus (A/Ontario/9698/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
CY060579.1 Influenza A virus (A/Ontario/304434/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
CY060539.1 Influenza A virus (A/Ontario/25389/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
CY055300.1 Influenza A virus (A/Singapore/GN285/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
CY045975.1 Influenza A virus (A/Toronto/T9842/2009(H1N1)) segment 1 sequence 3254 3254 100% 0.0 91%
GQ214155.1 Influenza A virus (A/Paris/2573/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3254 3254 100% 0.0 91%
CY060619.1 Influenza A virus (A/Ontario/313762/2009(H1N1)) segment 1 sequence 3252 3252 99% 0.0 91%
CY045943.1 Influenza A virus (A/Toronto/C2781/2009(H1N1)) segment 1 sequence 3252 3252 99% 0.0 91%
CY060499.1 Influenza A virus (A/Ontario/10016/2009(H1N1)) segment 1 sequence 3250 3250 100% 0.0 91%
GQ866917.1 Influenza A virus (A/Thailand/CU-H276/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3250 3250 100% 0.0 91%
CY088706.1 Influenza A virus (A/Mum/NIV9945/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
CY092782.1 Influenza A virus (A/California/VRDL353/2009(mixed)) polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
JF275940.1 Influenza A virus (A/swine/Nanchang/5/2010(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
JF275924.1 Influenza A virus (A/swine/Nanchang/3/2010(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
CY076752.1 Influenza A virus (A/Ontario/142358/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
HQ011415.1 Influenza A virus (A/Guangdong/45/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
CY060731.1 Influenza A virus (A/Ontario/35273/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060707.1 Influenza A virus (A/Ontario/315637/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060691.1 Influenza A virus (A/Ontario/315187/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060659.1 Influenza A virus (A/Ontario/315015/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060603.1 Influenza A virus (A/Ontario/308054/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060587.1 Influenza A virus (A/Ontario/305139/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060547.1 Influenza A virus (A/Ontario/25913/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY060515.1 Influenza A virus (A/Ontario/222656/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
GQ866956.2 Influenza A virus (A/Thailand/CU-H9/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
CY053749.1 Influenza A virus (A/Russia/200/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY046940.1 Influenza A virus (A/Netherlands/602/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY045959.1 Influenza A virus (A/Toronto/T5294/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
CY045508.1 Influenza A virus (A/Toronto/R8564/2009(H1N1)) segment 1 sequence 3249 3249 100% 0.0 91%
GQ411904.1 Influenza A virus (A/Toronto/T5308/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
GQ373259.1 Influenza A virus (A/Toronto/3141/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
GQ205443.1 Influenza A virus (A/Thailand/104/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3249 3249 100% 0.0 91%
GQ166207.1 Influenza A virus (A/Hamburg/4/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3247 3247 99% 0.0 91%
CY089840.1 Influenza A virus (A/Singapore/527/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
CY089839.1 Influenza A virus (A/Singapore/471/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
CY089838.1 Influenza A virus (A/Singapore/276/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
JF275948.1 Influenza A virus (A/swine/Nanchang/6/2010(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
CY081058.1 Influenza A virus (A/Ontario/130741/2010(H1N1)) polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
CY076728.1 Influenza A virus (A/swine/Thailand/CU-SA412/2010(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
GU480807.1 Influenza A virus (A/Hamburg/NY1580/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
CY060723.1 Influenza A virus (A/Ontario/328474/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY060699.1 Influenza A virus (A/Ontario/315613/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY060683.1 Influenza A virus (A/Ontario/315181/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY060651.1 Influenza A virus (A/Ontario/315003/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY060627.1 Influenza A virus (A/Ontario/314095/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY060531.1 Influenza A virus (A/Ontario/237882/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY053741.1 Influenza A virus (A/Russia/190/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY049377.1 Influenza A virus (A/Singapore/ON442/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
CY045951.1 Influenza A virus (A/Toronto/T0106/2009(H1N1)) segment 1 sequence 3245 3245 100% 0.0 91%
GQ464405.1 Influenza A virus (A/Catalonia/63/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3245 3245 100% 0.0 91%
GQ251032.1 Influenza A virus (A/Italy/05/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3245 3245 99% 0.0 91%
CY083941.1 Influenza A virus (A/Warsaw/INS149/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3243 3243 99% 0.0 91%
CY083901.1 Influenza A virus (A/San Diego/INS73/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3243 3243 99% 0.0 91%
CY060715.1 Influenza A virus (A/Ontario/320266/2009(H1N1)) segment 1 sequence 3243 3243 99% 0.0 91%
GQ332640.1 Influenza A virus (A/New York/1682-WC_RG1/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3243 3243 100% 0.0 91%
GQ387380.1 Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3243 3243 100% 0.0 91%
GQ288369.1 Influenza A virus (A/Fuzhou/01/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3243 3243 99% 0.0 91%
GQ132137.1 Influenza A virus (A/Canada-ON/RV1526/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3243 3243 99% 0.0 91%
HQ712180.1 Influenza A virus (A/Brisbane/2015/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3241 3241 99% 0.0 91%
JF275932.1 Influenza A virus (A/swine/Nanchang/F9/2010(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3241 3241 100% 0.0 91%
CY076768.1 Influenza A virus (A/Ontario/147723/2009(H1N1)) segment 1 sequence 3241 3241 99% 0.0 91%
AB538386.1 Influenza A virus (A/Nagano/RC1/2009(H1N1)) PB2 gene for polymerase PB2, complete cds, segment: 1 3241 3241 99% 0.0 91%
CY049113.1 Influenza A virus (A/Singapore/ON923/2009(H1N1)) segment 1 sequence 3241 3241 99% 0.0 91%
CY088692.1 Influenza A virus (A/Pune/NIV759/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
CY088650.1 Influenza A virus (A/Rtng/NIV11650/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
CY086877.1 Influenza A virus (A/swine/Indiana/240218/2010(H1N2)) polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
HQ728107.1 Influenza A virus (A/swine/Taiwan/CH-1204/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
HM370957.1 Influenza A virus (A/turkey/Ontario/FAV110/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
HM370972.1 Influenza A virus (A/turkey/Ontario/FAV114-17/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
CY060611.1 Influenza A virus (A/Ontario/309862/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
CY060563.1 Influenza A virus (A/Ontario/296008/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
GU324340.1 Influenza A virus (A/swine/Taiwan/TD-4119B2/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
CY049057.1 Influenza A virus (A/Singapore/ON305/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
GU108483.2 Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3240 3240 100% 0.0 91%
CY047741.1 Influenza A virus (A/Taiwan/526/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
CY045231.1 Influenza A virus (A/Taiwan/126/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
CY045479.1 Influenza A virus (A/Sachsen-Anhalt/101/2009(H1N1)) segment 1 sequence 3240 3240 100% 0.0 91%
CY003479.1 Influenza A virus (A/New York/443/2001(H1N1)) segment 1, complete sequence 3240 3240 100% 0.0 91%
CY060643.1 Influenza A virus (A/Ontario/314603/2009(H1N1)) segment 1 sequence 3238 3238 99% 0.0 91%
CY060523.1 Influenza A virus (A/Ontario/235657/2009(H1N1)) segment 1 sequence 3238 3238 99% 0.0 91%
GQ328867.1 Influenza A virus (A/Finland/554/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3238 3238 99% 0.0 91%
GQ328865.1 Influenza A virus (A/Finland/553/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3238 3238 99% 0.0 91%
CY088699.1 Influenza A virus (A/Pune/NIV9355/2009(H1N1)) polymerase PB2 (PB2) gene, complete cds 3236 3236 100% 0.0 91%
CY064788.2 Influenza A virus (A/Guangdong/SB1/2009(H1N1)) segment 1 sequence 3236 3236 100% 0.0 91%
CY063785.1 Influenza A virus (A/Singapore/ON1868/2009(H1N1)) segment 1 sequence 3236 3236 100% 0.0 91%
CY063751.1 Influenza A virus (A/Singapore/GP3084/2009(H1N1)) segment 1 sequence 3236 3236 100% 0.0 91%
HM241701.1 Influenza A virus (A/Jalna/NIV9436/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3236 3236 100% 0.0 91%
HM241694.1 Influenza A virus (A/Che/NIV658/2009(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3236 3236 100% 0.0 91%
CY060571.1 Influenza A virus (A/Ontario/29801/2009(H1N1)) segment 1 sequence 3236 3236 100% 0.0 91%
CY060507.1 Influenza A virus (A/Ontario/10296/2009(H1N1)) segment 1 sequence 3234 3234 99% 0.0 91%

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As seen in the top 100 Genbank matches, the pandemic H1N1 sequences are more closely related than the seasonal H3N2 sequences.

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Top 100 matches
Sequences producing significant alignments: Accession Description Max score Total score Query coverage E value Max ident Links
FR687271.1 Influenza A virus (A/chicken/Egypt/Q1185/2010(H5N1)) segment 1, complete segment 4174 4174 100% 0.0 100%
EU748900.1 Influenza A virus (A/falcon/Saudi Arabia/D1795/2005(H5N1)) polymerase PB2 (PB2) gene, complete cds 3510 3510 100% 0.0 94%
AM262533.1 Influenza A virus (A/chicken/Nigeria/SO493/2006(H5N1)) PB2 gene for polymerase basic protein 2, genomic RNA 3508 3508 99% 0.0 94%
EF205206.1 Influenza A virus (A/goose/Krasnoozerskoe/627/05(H5N1)) segment 1, complete sequence 3507 3507 100% 0.0 94%
EF205204.1 Influenza A virus (A/chicken/Omsk/14/05(H5N1)) segment 1, complete sequence 3507 3507 100% 0.0 94%
EU213050.1 Influenza A virus (A/domestic goose/Pavlodar/1/2005(H5N1)) polymerase basic protein subunit 2 (PB2) gene, complete cds 3505 3505 99% 0.0 94%
AM262534.1 Influenza A virus (A/chicken/Nigeria/SO494/2006(H5N1)) PB2 gene for polymerase basic protein 2, genomic RNA 3505 3505 99% 0.0 94%
CY044039.1 Influenza A virus (A/chicken/Egypt/083/2008(H5N1)) segment 1, complete sequence 3503 3503 99% 0.0 94%
EF205205.1 Influenza A virus (A/goose/Suzdalka/10/05(H5N1)) segment 1, complete sequence 3501 3501 100% 0.0 94%
CY041297.1 Influenza A virus (A/chicken/Egypt/0836/2008(H5N1)) segment 1, complete sequence 3499 3499 99% 0.0 94%
CY020660.1 Influenza A virus (A/turkey/Egypt/2253-2/2006(H5N1)) segment 1, complete sequence 3499 3499 99% 0.0 94%
CY057193.1 Influenza A virus (A/chicken/Egypt/9402-CLEVB213/2007(H5N1)) segment 1 sequence 3498 3498 98% 0.0 94%
EF205207.1 Influenza A virus (A/turkey/Suzdalka/12/05(H5N1)) segment 1, complete sequence 3498 3498 100% 0.0 94%
EF205203.1 Influenza A virus (A/chicken/Suzdalka/06/05(H5N1)) segment 1, complete sequence 3498 3498 100% 0.0 94%
DQ643980.1 Influenza A virus (A/cat/Germany/606/2006(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3498 3498 100% 0.0 94%
AM262531.1 Influenza A virus (A/chicken/Nigeria/SO300/2006(H5N1)) PB2 gene for polymerase basic protein 2, genomic RNA 3496 3496 99% 0.0 94%
AM744956.1 Influenza A virus (A/stone marten/Germany/R747/2006(H5N1)) PB2 gene for polymerase B2, genomic RNA 3492 3492 100% 0.0 93%
AM262532.1 Influenza A virus (A/chicken/Nigeria/SO452/2006(H5N1)) PB2 gene for polymerase basic protein 2, genomic RNA 3492 3492 99% 0.0 94%
DQ464357.1 Influenza A virus (A/swan/Germany/R65/2006(H5N1)) protein basic 2 (PB2) gene, complete cds 3492 3492 100% 0.0 93%
CY020652.1 Influenza A virus (A/chicken/Egypt/2253-1/2006(H5N1)) segment 1, complete sequence 3490 3490 99% 0.0 94%
GU186707.1 Influenza A virus (A/whooper swan/Mongolia/244/2005(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3483 3483 99% 0.0 94%
CY037759.1 Influenza A virus (A/chicken/Rawalakot/NARC2441A/2006(H5N1)) segment 1 sequence 3483 3483 100% 0.0 93%
EF205209.1 Influenza A virus (A/chicken/Tula/4/05(H5N1)) segment 1, complete sequence 3483 3483 100% 0.0 93%
DQ449647.1 Influenza A virus (A/duck/Kurgan/08/2005(H5N1)) polymerase basic protein 2 (PB2) mRNA, complete cds 3483 3483 99% 0.0 94%
DQ358750.1 Influenza A virus (A/Cygnus olor/Astrakhan/Ast05-2-3/2005(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3483 3483 99% 0.0 94%
FR687272.1 Influenza A virus (A/chicken/Egypt/Q1011/2010(H5N1)) segment 1, complete segment 3479 3479 100% 0.0 93%
CY098659.1 Influenza A virus (A/Xinjiang/1/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3479 3479 99% 0.0 94%
CY037767.1 Influenza A virus (A/chicken/Sihala/NARC3303.4/2006(H5N1)) segment 1 sequence 3479 3479 100% 0.0 93%
EF362433.1 Influenza A virus (A/chicken/India/NIV33491/06(H5N1)) segment 1, complete sequence 3479 3479 100% 0.0 93%
EF362425.1 Influenza A virus (A/chicken/India/NIV33487/06(H5N1)) segment 1, complete sequence 3479 3479 100% 0.0 93%
HQ724520.1 Influenza A virus (A/chicken/Kurgan/3654at/2005(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3478 3478 99% 0.0 93%
EU147290.1 Influenza A virus (A/avian/Russia/5354-vac/2005(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3478 3478 99% 0.0 94%
DQ232608.1 Influenza A virus (A/duck/Novosibirsk/56/2005(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3478 3478 99% 0.0 94%
HM208709.1 Influenza A virus (A/chicken/Lahore/NARC-3320/2006(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3476 3476 100% 0.0 93%
EU574926.1 Influenza A virus (A/chicken/Israel/1055/2008(H5N1)) polymerase PB2 (PB2) gene, complete cds 3476 3476 98% 0.0 94%
EU429985.1 Influenza A virus (A/chicken/Gaza/450/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3474 3474 99% 0.0 94%
EU429983.1 Influenza A virus (A/turkey/Israel/345/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3474 3474 99% 0.0 94%
EF605604.1 Influenza A virus (A/chicken/Russia_Krasnodar/2/2007(H5N1)) polymerase PB2 (PB2) gene, complete cds 3474 3474 100% 0.0 93%
AM503071.1 Influenza A virus (A/chicken/Nigeria/AB13/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3474 3474 99% 0.0 93%
AM503067.1 Influenza A virus (A/chicken/Burkina Faso/13.1/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3474 3474 99% 0.0 93%
AM503066.1 Influenza A virus (A/hooded vulture/Burkina Faso/2/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3474 3474 99% 0.0 93%
CY016906.1 Influenza A virus (A/duck/Egypt/2253-3/2006(H5N1)) segment 1, complete sequence 3472 3472 99% 0.0 94%
EU233714.1 Influenza A virus (A/duck/Korea/Asan5/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3470 3470 100% 0.0 93%
EU233722.1 Influenza A virus (A/duck/Korea/Asan6/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3470 3470 100% 0.0 93%
EU233738.1 Influenza A virus (A/environment/Korea/W149/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3470 3470 100% 0.0 93%
EU233746.1 Influenza A virus (A/environment/Korea/W150/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3470 3470 100% 0.0 93%
DQ529292.1 Influenza A virus (A/chicken/Nigeria/641/2006(H5N1)) polymerase basic protein 2 (PB2), complete cds 3470 3470 100% 0.0 93%
EU574919.1 Influenza A virus (A/chicken/Israel/364/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3469 3469 99% 0.0 94%
EU429987.1 Influenza A virus (A/chicken/Israel/625/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3469 3469 99% 0.0 94%
EU429986.1 Influenza A virus (A/chicken/Gaza/714/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3469 3469 99% 0.0 94%
AM503073.1 Influenza A virus (A/chicken/Nigeria/BA211/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3469 3469 99% 0.0 93%
FR687273.1 Influenza A virus (A/chicken/Egypt/1/2009(H5N1)) segment 1, complete segment 3467 3467 98% 0.0 94%
AB465625.1 Influenza A virus (A/Egypt/CL6/2007(H5N1)) PB2 gene for polymerase PB2, complete cds 3467 3467 99% 0.0 94%
AB496983.1 Influenza A virus (A/duck/Egypt/D1Li216/2007(H5N1)) PB2 gene for polymerase PB2, complete cds 3467 3467 98% 0.0 94%
CY020356.1 Influenza A virus (A/cygnus olor/Italy/808/2006(H5N1)) segment 1, complete sequence 3467 3467 99% 0.0 94%
CY017186.1 Influenza A virus (A/guinea fowl/Nigeria/957-12/2006(H5N1)) segment 1, complete sequence 3467 3467 99% 0.0 94%
CY016802.1 Influenza A virus (A/mallard/Italy/835/2006(H5N1)) segment 1, complete sequence 3467 3467 99% 0.0 94%
CY063857.1 Influenza A virus(A/Cygnus olor/Caspian Sea/2006(H5N1)) segment 1 sequence 3465 3465 100% 0.0 93%
AM503072.1 Influenza A virus (A/chicken/Nigeria/AB14/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3465 3465 99% 0.0 93%
AM503070.1 Influenza A virus (A/chicken/Nigeria/OD9/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3465 3465 99% 0.0 93%
AM503068.1 Influenza A virus (A/chicken/Nigeria/FA7/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3465 3465 99% 0.0 93%
AB496982.1 Influenza A virus (A/duck/Egypt/D1Br22/2007(H5N1)) PB2 gene for polymerase PB2, complete cds 3463 3463 98% 0.0 94%
CY021524.1 Influenza A virus (A/chicken/Ivory Coast/1787-35/2006(H5N1)) segment 1, complete sequence 3463 3463 99% 0.0 93%
CY017050.1 Influenza A virus (A/swan/Slovenia/760/2006(H5N1)) segment 1, complete sequence 3463 3463 99% 0.0 93%
DQ095757.1 Influenza A virus (A/Bar-headed Goose/Qinghai/5/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3463 3463 99% 0.0 93%
GU354062.1 Influenza A virus (A/chicken/Nandurbar/7979/2006(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3461 3461 100% 0.0 93%
EF205208.1 Influenza A virus (A/chicken/Krasnodar/123/06(H5N1)) segment 1, complete sequence 3461 3461 100% 0.0 93%
CY016826.1 Influenza A virus (A/cygnus olor/Croatia/1/2005(H5N1)) segment 1, complete sequence 3461 3461 99% 0.0 93%
CY016291.1 Influenza A virus (A/chicken/Nigeria/957-20/2006(H5N1)) segment 1, complete sequence 3461 3461 98% 0.0 94%
DQ864713.1 Influenza A virus (A/duck/Novosibirsk/02/05(H5N1)) polymerase basic subunit 2 (PB2) gene, complete cds 3461 3461 99% 0.0 93%
DQ095752.1 Influenza A virus (A/Bar-headed Goose/Qinghai/59/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3461 3461 99% 0.0 93%
EU429984.1 Influenza A virus (A/turkey/Israel/446/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3460 3460 99% 0.0 93%
AM503069.1 Influenza A virus (A/chicken/Nigeria/IF10/2006(H5N1)) partial mRNA for polymerase basic protein 2 (pb2 gene) 3460 3460 99% 0.0 93%
AB465626.1 Influenza A virus (A/Egypt/D2br10/2007(H5N1)) PB2 gene for polymerase PB2, complete cds 3458 3458 99% 0.0 93%
AB496981.1 Influenza A virus (A/duck/Egypt/D1Tr8/2007(H5N1)) PB2 gene for polymerase PB2, complete cds 3458 3458 98% 0.0 94%
CY016818.1 Influenza A virus (A/chicken/Cote d'Ivoire/1787-34/2006(H5N1)) segment 1, complete sequence 3458 3458 99% 0.0 93%
CY016914.1 Influenza A virus (A/chicken/Nigeria/1047-8/2006(H5N1)) segment 1, complete sequence 3458 3458 99% 0.0 93%
CY016283.1 Influenza A virus (A/chicken/Nigeria/641/2006(H5N1)) segment 1, complete sequence 3458 3458 99% 0.0 93%
DQ095762.1 Influenza A virus (A/Bar-headed Goose/Qinghai/65/05(H5N1)) polymerase basic subunit 2 (PB2) gene, complete cds 3458 3458 99% 0.0 93%
GQ227366.1 Influenza A virus (A/pika/Qinghai/BI/2007(H5N1)) segment 1 polymerase PB2 (PB2) gene, complete cds 3456 3456 100% 0.0 93%
EU700507.1 Influenza A virus (A/saker falcon/Kuwait/0286/2007(H5N1)) polymerase PB2 (PB2) gene, complete cds 3456 3456 100% 0.0 93%
DQ914807.1 Influenza A virus (A/grebe/Tyva/Tyv06-1/2006(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3456 3456 99% 0.0 93%
DQ863510.1 Influenza A virus (A/Grebe/Tyva/Tyv06-8/2006(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3456 3456 99% 0.0 93%
DQ852607.1 Influenza A virus (A/grebe/Tyva/Tyv06-2/06(H5N1)) polymerase basic protein 2 (PB2) gene, complete cds 3456 3456 99% 0.0 93%
CY016810.1 Influenza A virus (A/duck/Cote d'Ivoire/1787-18/2006(H5N1)) segment 1, complete sequence 3454 3454 99% 0.0 93%
FM177124.1 Influenza A virus (A/chicken/Germany/R3272/2006(H5N1)) PB2 gene for polymerase B2 3452 3452 100% 0.0 93%
DQ095760.1 Influenza A virus (A/Bar-headed Goose/Qinghai/62/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3452 3452 98% 0.0 93%
DQ095758.1 Influenza A virus (A/Bar-headed Goose/Qinghai/61/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3452 3452 98% 0.0 93%
CY044047.1 Influenza A virus (A/duck/Egypt/0871/2008(H5N1)) segment 1, complete sequence 3451 3451 98% 0.0 93%
DQ095763.1 Influenza A virus (A/Bar-headed Goose/Qinghai/67/05(H5N1)) polymerase basic subunit 2 (PB2) gene, complete cds 3451 3451 98% 0.0 93%
DQ095759.1 Influenza A virus (A/Bar-headed Goose/Qinghai/75/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3451 3451 98% 0.0 93%
DQ095754.1 Influenza A virus (A/Great Black-headed Gull/Qinghai/2/05(H5N1)) polymerase basic subunit 2 (PB2) gene, partial cds 3451 3451 98% 0.0 93%
FR687275.1 Influenza A virus (A/chicken/Qalubia/1/2006(H5N1)) segment 1, complete segment 3449 3449 98% 0.0 94%
EU697231.1 Influenza A virus (A/chicken/Nigeria/228-10/2006(H5N1)) polymerase PB2 (PB2) gene, complete cds 3449 3449 98% 0.0 94%
EU233698.1 Influenza A virus (A/chicken/Korea/CA7/2006(H5N1)) polymerase PB2 (PB2) gene, partial cds 3449 3449 99% 0.0 93%
CY020684.1 Influenza A virus (A/chicken/Sudan/2115-12/2006(H5N1)) segment 1, complete sequence 3449 3449 99% 0.0 93%
CY020628.1 Influenza A virus (A/chicken/Afghanistan/1573-47/2006(H5N1)) segment 1, complete sequence 3449 3449 99% 0.0 93%
CY017034.1 Influenza A virus (A/duck/Niger/914/2006(H5N1)) segment 1, complete sequence 3449 3449 99% 0.0 93%
FM177132.1 Influenza A virus (A/chicken/Germany/R3294/2007(H5N1)) PB2 gene for polymerase B2 3447 3447 100% 0.0 93%
CY035238.1 Influenza A virus (A/falcon/Saudi Arabia/D1936/2007(H5N1)) segment 1 sequence 3447 3447 100% 0.0 93%

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For this PB2, it is mostly H5N1 with recombination with H1N1 and seasonal H3N2 (note closest match is only 94%).

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Extensive IDENTITY with seasonal H1N1
EPI347181 A/Tianjin/15/2009(H1N1) (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342908 A/Texas/WRAIR1053P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342900 A/Japan/WRAIR1054P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342892 A/Oklahoma/WRAIR1110P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342884 A/Texas/WRAIR1115P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342876 A/Nevada/WRAIR1117P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342868 A/Texas/WRAIR1118P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342860 A/Kuwait/WRAIR1119P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342852 A/Japan/WRAIR1226P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342844 A/Illinois/WRAIR1233P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342828 A/Washington/WRAIR1237P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342820 A/South Korea/WRAIR1238P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342812 A/Nevada/WRAIR1257P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342804 A/Medellin/WRAIR1297P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342788 A/Piura/WRAIR1699P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342780 A/Piura/WRAIR1700P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342772 A/Trujillo/WRAIR1701P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342764 A/Trujillo/WRAIR1702P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342756 A/Pucallpa/WRAIR1704P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342748 A/Santa Cruz/WRAIR1706P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342740 A/Sullana/WRAIR1707P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342732 A/Piura/WRAIR1708P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342724 A/Pucallpa/WRAIR1709P/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI342677 A/Cusco/WRAIR1730P/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI336095 A/Mexico/UASLP-005/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI336087 A/Mexico/UASLP-006/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI336062 A/Mexico/UASLP-009/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI335451 A/New York/08-1253/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI326020 A/Boston/47/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325492 A/Taiwan/192/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325491 A/Taiwan/6723/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325490 A/Taiwan/9042/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325489 A/Taiwan/6566/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325487 A/Taiwan/5515/2005 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325486 A/Taiwan/5524/2005 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325484 A/Taiwan/5505/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325483 A/Taiwan/2900/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325482 A/Taiwan/1026/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325481 A/Taiwan/11526/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325480 A/Taiwan/10103/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325479 A/Taiwan/8885/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325478 A/Taiwan/3293/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325477 A/Taiwan/2885/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325476 A/Taiwan/2823/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325475 A/Taiwan/0258/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325474 A/Taiwan/10092/2007 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325473 A/Taiwan/3700/2007 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325472 A/Taiwan/0045/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325471 A/Taiwan/0586/2006 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325470 A/Taiwan/8949/2008 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI325468 A/Taiwan/10393/2005 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI324354 A/California/VRDL179/2009 (A/H0) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI320433 A/California/VRDL372/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI320396 A/California/VRDL191/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI320388 A/California/VRDL190/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI316596 A/Boston/32/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI316534 A/Boston/79/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI316005 A/Boston/3/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315402 A/Boston/94/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315394 A/Boston/82/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315386 A/Boston/81/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315378 A/Boston/78/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315370 A/Boston/77/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315362 A/Boston/74/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315354 A/Boston/70/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315346 A/Boston/61/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315338 A/Boston/59/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315330 A/Boston/54/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315322 A/Boston/50/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315306 A/Boston/44/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315298 A/Boston/25/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315290 A/Boston/23/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315282 A/Boston/22/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315274 A/Boston/10/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI315266 A/Boston/6/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI313126 A/Boston/2/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306113 A/Boston/95/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306105 A/Boston/93/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306097 A/Boston/92/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306089 A/Boston/91/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306081 A/Boston/89/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306073 A/Boston/88/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306065 A/Boston/86/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306057 A/Boston/85/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306049 A/Boston/84/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306041 A/Boston/83/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306033 A/Boston/80/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306025 A/Boston/76/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306017 A/Boston/72/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306009 A/Boston/71/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI306001 A/Boston/68/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305993 A/Boston/67/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305985 A/Boston/66/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305977 A/Boston/65/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305969 A/Boston/64/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305961 A/Boston/63/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305953 A/Boston/62/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305945 A/Boston/60/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305937 A/Boston/58/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)
EPI305929 A/Boston/52/2009 (A/H1N1) segment 1 (PB2) 99.0 1.540818e-20 53/53 (100%)

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The two PB2 sequences above (from H5N1 infected chickens) are EXTENSVELY recombined with regions from pandemic H1N1, seasonal H1N1, and seasonal H3N2.

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The PA sequences from these two isolates are Egyptian H5N1 but with many polymorphisms shared with Fujian H5N1 (in China and Cambodia) as well as H3N2v, H1N2v, H1N1v in United States as noted in prior thread
viewtopic.php?f=5&t=7848

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More recombination with more isolates in PB1 (A/chicken/Egypt/Q1011/2010 and A/chicken/Egypt/Q1185/2010).

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Recombined with pandemic H1N1
EPI347182 A/Beijing/7/2009(H1N1) (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347096 A/Nonthaburi/78/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347089 A/Brisbane/70/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347075 A/Florida/08/2010 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347062 A/Wisconsin/02/2010 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347050 A/Hong Kong/34360/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347033 A/Texas/66/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347027 A/Mississippi/05/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI347016 A/Iowa/14/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI342466 A/Washington/02/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI342432 A/Kentucky/09/2010 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI341784 A/District of Columbia/WRAIR313/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI341569 A/California/04/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339334 A/Volgograd/CRIE-DMV/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339326 A/Joshkar-Ola/CRIE-BLP/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339318 A/Nizhnii Novgorod/CRIE-BLM/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339310 A/Nizhnii Novgorod/CRIE-NGV/2010 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339158 A/swine/Guangdong/1/2010 (A/H1N2) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI339151 A/Cheboksary/IIV-92/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI338810 A/swine/Texas/A01104004/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI338802 A/swine/Texas/A01104003/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI338301 A/Bangkok/INS520/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337906 A/swine/Guangdong/2712/2010 (A/H1N2) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337905 A/swine/Guangdong/2693/2010 (A/H1N2) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337904 A/swine/Guangdong/2676/2010 (A/H1N2) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337903 A/swine/Guangdong/2670/2010 (A/H1N2) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337666 A/swine/Guangdong/1437/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337665 A/swine/Guangdong/1436/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337664 A/swine/Guangdong/1434/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337663 A/swine/Guangdong/1430/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337662 A/swine/Guangdong/1425/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337661 A/swine/Guangdong/1409/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337660 A/swine/Guangdong/1408/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337659 A/swine/Guangdong/1397/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337658 A/swine/Guangdong/1367/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337657 A/swine/Guangdong/1361/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337656 A/swine/Guangdong/297/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337655 A/swine/Guangdong/294/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337654 A/swine/Guangdong/286/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337653 A/swine/Guangdong/278/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337652 A/swine/Guangdong/275/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337651 A/swine/Guangdong/50/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337647 A/swine/Guangdong/114/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337646 A/swine/Guangdong/106/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337645 A/swine/Guangdong/94/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI337487 A/swine/Minnesota/02979/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336865 A/Kurgan/01/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336861 A/Omsk/01/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336783 A/Orenburg/01/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336752 A/swine/Alberta/25/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336751 A/swine/Alberta/25/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI336745 A/Shanghai/2167T/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335960 A/North Fitzroy/INS463/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335600 A/Chile/89/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335592 A/Khon Kaen/INS461/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335584 A/Bangkok/INS484/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335576 A/Bangkok/INS486/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335568 A/Bangkok/INS487/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335560 A/Bangkok/INS488/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335544 A/Bangkok/INS502/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335536 A/Bangkok/INS508/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335528 A/Bangkok/INS509/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335424 A/Chile/70/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI335261 A/Tula/CRIE-SIA/2011 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI334601 A/District of Columbia/WRAIR0313/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI334592 A/Dakar/WRAIR0020T/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI334584 A/Dakar/WRAIR0020T/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI334560 A/Mexico City/WRAIR3569N/2010(H1N1) (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333553 A/swine/Alberta/25/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333545 A/District of Columbia/WRAIR0303/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333537 A/District of Columbia/WRAIR0304/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333529 A/District of Columbia/WRAIR0306/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333521 A/District of Columbia/WRAIR0307/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333513 A/District of Columbia/WRAIR0308/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333505 A/District of Columbia/WRAIR0309/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333497 A/District of Columbia/WRAIR0310/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333490 A/District of Columbia/WRAIR0313/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333482 A/District of Columbia/WRAIR0313/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333466 A/Mexico/47N/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333458 A/South Carolina/WRAIR1645P/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333450 A/Moscow/WRAIR1929P/2010 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333442 A/Moscow/WRAIR1932P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333434 A/Moscow/WRAIR1933P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333426 A/Moscow/WRAIR1965P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333418 A/Moscow/WRAIR1966P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333410 A/Moscow/WRAIR1967P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333402 A/Moscow/WRAIR1968P/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333370 A/Budapest/WRAIR3789N/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333362 A/Budapest/WRAIR3789T/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333338 A/Prague/WRAIR4146N/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333330 A/Moscow/WRAIR4305N/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333314 A/Moscow/WRAIR4308T/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333290 A/Moscow/WRAIR4316N/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333282 A/Moscow/WRAIR4316T/2011 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333248 A/Lima/WRAIR1687P/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI333241 A/Lima/WRAIR1696P/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI332963 A/Delhi/NIV3610/2009 (A/H1N1 pdm09) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI332909 A/Pune/NIV0953725/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI332902 A/Pune/NIV10278/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)
EPI332887 A/Rtng/NIV11650/2009 (A/H1N1) segment 2 (PB1) 34.4 4.431417e-02 18/18 (100%)

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