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PostPosted: Wed Jan 04, 2012 11:19 am 
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C622A (Q196K)
EPI347304 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI340175 A/chicken/Egypt/10909V/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI293952 A/Chicken/Turkey-Batman/09rs2842-92/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI287373 A/chicken/Egypt/3982-19/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI283816 A/chicken/Egypt/10135ss/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI283804 A/turkey/Egypt/101474v/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI283796 A/chicken/Egypt/1055/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI283790 A/chicken/Egypt/1031/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI283783 A/chicken/Egypt/1050ss/2010 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI246013 A/goose/Egypt/0946smL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI245994 A/chicken/Egypt/096L-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI237640 A/wild duck/Bavaria/14/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI237636 A/wild duck/Bavaria/13/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI237634 A/wild duck/Bavaria/12/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI214883 A/chicken/Egypt/09359S-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI214878 A/chicken/Egypt/0910QL-NLQP/2009 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI164595 A/mallard/Bavaria/10/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI136823 A/falcon/Kuwait/1019-7/2007 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)

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PostPosted: Wed Jan 04, 2012 11:23 am 
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Posts: 46829
Location: Pittsburgh, PA USA
C628T (P198S)

EPI347304 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI287212 A/MDCK/Germany/[A/cygnus cygnus/Germany/R65/2006]-P18-escape/2008 (H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI263404 A/Cygnus olor/Caspian Sea/2006 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100

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PostPosted: Wed Jan 04, 2012 11:25 am 
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Posts: 46829
Location: Pittsburgh, PA USA
niman wrote:
C628T (P198S)

EPI347304 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI287212 A/MDCK/Germany/[A/cygnus cygnus/Germany/R65/2006]-P18-escape/2008 (H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI263404 A/Cygnus olor/Caspian Sea/2006 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100

Details on isolate history in: Dirk Hoeper, Donata Kalthoff, Bernd Hoffmann, and Martin Beer "Highly Pathogenic Avian Influenza Subtype H5N1 escaping neutralization: more than HA variation", Journal of Virology

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PostPosted: Wed Jan 04, 2012 11:28 am 
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Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
C628T (P198S)

EPI347304 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI287212 A/MDCK/Germany/[A/cygnus cygnus/Germany/R65/2006]-P18-escape/2008 (H5N1) (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100%)
EPI263404 A/Cygnus olor/Caspian Sea/2006 (A/H5N1) segment 4 (HA) 27.0 7.414894e+00 14/14 (100

Details on isolate history in: Dirk Hoeper, Donata Kalthoff, Bernd Hoffmann, and Martin Beer "Highly Pathogenic Avian Influenza Subtype H5N1 escaping neutralization: more than HA variation", Journal of Virology

J Virol. 2011 Nov 16. [Epub ahead of print]

Highly Pathogenic Avian Influenza Subtype H5N1 escaping neutralization: more than HA variation.

Höper D, Kalthoff D, Hoffmann B, Beer M.


Source

Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493 Greifswald-Insel Riems, Germany.


Abstract

Influenza A viruses are one of the major threats in modern health care. Novel viruses arise due to antigenic drift and antigenic shift, leading to escape from the immune system and resulting in a serious problem for disease control. In order to investigate the escape process and to enable predictions of escape, we serially passaged influenza A H5N1 virus in vitro 100 times under immune pressure. The generated escape viruses were characterized phenotypically and in detail by full genome deep sequencing. Mutations already found in natural isolates were detected, evidencing the in vivo relevance of the in vitro induced amino acid substitutions. Additionally, several novel alterations were triggered. Altogether, the results imply that our in vitro system is suitable to study influenza A virus evolution and that it might even be possible to predict antigenic changes of influenza A viruses

http://www.ncbi.nlm.nih.gov/pubmed/22090121

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PostPosted: Sun Jan 08, 2012 10:04 am 
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Location: Pittsburgh, PA USA
PB2 A/Guangdong-Shenzhen/1/2011(H5N1) 2257 EPI347459

PB1 A/Guangdong-Shenzhen/1/2011 2274 EPI347308

PA A/Guangdong-Shenzhen/1/2011(H5N1) 2137 EPI347460

HA A/Guangdong-Shenzhen/1/2011 1650 EPI347304

NP A/Guangdong-Shenzhen/1/2011 1497 EPI347307

NA A/Guangdong-Shenzhen/1/2011 1350 EPI347305

MP A/Guangdong-Shenzhen/1/2011 963 EPI347306

NS A/Guangdong-Shenzhen/1/2011(H5N1) 823 EPI347458

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PostPosted: Sun Jan 08, 2012 10:17 am 
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Posts: 46829
Location: Pittsburgh, PA USA
Top 100 PB2 matches at GISAID

EPI347459 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 1 (PB2) 4156.1 0.000000e+00 2250/2250 (100%)
EPI336981 A/duck/Zhejiang/2248/2011 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2222/2250 (98%)
EPI336979 A/duck/Zhejiang/2244/2011 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2222/2250 (98%)
EPI336978 A/duck/Zhejiang/2243/2011 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2222/2250 (98%)
EPI336977 A/duck/Zhejiang/2242/2011 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2222/2250 (98%)
EPI336976 A/duck/Zhejiang/224/2011 (A/H5N1) segment 1 (PB2) 4001.0 0.000000e+00 2222/2250 (98%)
EPI337228 A/Hubei/1/2010 (A/H5N1) segment 1 (PB2) 3934.5 0.000000e+00 2210/2250 (98%)
EPI267029 A/Hubei/1/2010 (A/H5N1) segment 1 (PB2) 3934.5 0.000000e+00 2210/2250 (98%)
EPI168037 A/grey heron/Hong Kong/1046/2008 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2202/2250 (97%)
EPI337214 A/Guangxi/1/2009 (A/H5N1) segment 1 (PB2) 3862.5 0.000000e+00 2197/2250 (97%)
EPI280085 A/Guangxi/1/2009 (A/H5N1) segment 1 (PB2) 3858.8 0.000000e+00 2196/2250 (97%)
EPI168053 A/magpie robin/Hong Kong/1897/2008 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2196/2250 (97%)
EPI168045 A/magpie robin/Hong Kong/1097/2008 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2196/2250 (97%)
EPI168029 A/great egret/Hong Kong/807/2008 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2196/2250 (97%)
EPI168005 A/grey heron/Hong Kong/3088/2007 (A/H5N1) segment 1 (PB2) 3845.8 0.000000e+00 2194/2250 (97%)
EPI335231 A/duck/Lao/6/2010 (A/H5N1) segment 1 (PB2) 3823.7 0.000000e+00 2190/2250 (97%)
EPI335215 A/duck/Lao/9/2010 (A/H5N1) segment 1 (PB2) 3823.7 0.000000e+00 2190/2250 (97%)
EPI335104 A/duck/Lao/980/2010 (A/H5N1) segment 1 (PB2) 3818.1 0.000000e+00 2189/2250 (97%)
EPI335134 A/duck/Lao/968/2010 (A/H5N1) segment 1 (PB2) 3812.6 0.000000e+00 2188/2250 (97%)
EPI335128 A/duck/Lao/975/2010 (A/H5N1) segment 1 (PB2) 3812.6 0.000000e+00 2188/2250 (97%)
EPI335166 A/duck/Lao/959/2010 (A/H5N1) segment 1 (PB2) 3807.1 0.000000e+00 2187/2250 (97%)
EPI335142 A/environment/Lao/964/2010 (A/H5N1) segment 1 (PB2) 3807.1 0.000000e+00 2187/2250 (97%)
EPI335150 A/duck/Lao/962/2010 (A/H5N1) segment 1 (PB2) 3801.5 0.000000e+00 2185/2250 (97%)
EPI167887 A/peregrine falcon/Hong Kong/1143/2007 (A/H5N1) segment 1 (PB2) 3801.5 0.000000e+00 2186/2250 (97%)
EPI335112 A/environment/Lao/979/2010 (A/H5N1) segment 1 (PB2) 3790.4 0.000000e+00 2184/2250 (97%)
EPI335088 A/duck/Lao/986/2010 (A/H5N1) segment 1 (PB2) 3790.4 0.000000e+00 2184/2250 (97%)
EPI167997 A/little egret/Hong Kong/8863/2007 (A/H5N1) segment 1 (PB2) 3790.4 0.000000e+00 2184/2250 (97%)
EPI167989 A/little egret/Hong Kong/8550/2007 (A/H5N1) segment 1 (PB2) 3784.9 0.000000e+00 2183/2250 (97%)
EPI335096 A/duck/Lao/981/2010 (A/H5N1) segment 1 (PB2) 3755.4 0.000000e+00 2173/2251 (96%)
EPI337300 A/water/Xinjiang/3/2009 (A/H5N1) segment 1 (PB2) 3751.7 0.000000e+00 2178/2251 (96%)
EPI280253 A/water/Xinjiang/3/2009 (A/H5N1) segment 1 (PB2) 3751.7 0.000000e+00 2178/2251 (96%)
EPI335080 A/duck/Lao/987/2010 (A/H5N1) segment 1 (PB2) 3748.0 0.000000e+00 2175/2250 (96%)
EPI337200 A/Xinjiang/1/2009 (A/H5N1) segment 1 (PB2) 3746.1 0.000000e+00 2176/2250 (96%)
EPI280071 A/Xinjiang/1/2009 (A/H5N1) segment 1 (PB2) 3746.1 0.000000e+00 2176/2250 (96%)
EPI335223 A/duck/Lao/7/2010 (A/H5N1) segment 1 (PB2) 3742.4 0.000000e+00 2174/2251 (96%)
EPI337323 A/water/Hunan/7/2009 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2176/2251 (96%)
EPI280277 A/water/Hunan/7/2009 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2176/2251 (96%)
EPI221577 A/Daurian starling/Hong Kong/1532/2007 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2156/2223 (96%)
EPI220268 A/black-crowned night heron/Hong Kong/659/2008 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2175/2251 (96%)
EPI168013 A/common buzzard/Hong Kong/9213/2007 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2175/2251 (96%)
EPI167981 A/house crow/Hong Kong/5288/2007 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2160/2229 (96%)
EPI107427 A/robin/Hong Kong/366/2006 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2172/2247 (96%)
EPI107423 A/robin/Hong Kong/75/2006 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2172/2247 (96%)
EPI167966 A/common magpie/Hong Kong/5052/2007 (A/H5N1) segment 1 (PB2) 3725.8 0.000000e+00 2155/2224 (96%)
EPI224972 A/chicken/Hong Kong/D-06-0947/2006 (A/H5N1) segment 1 (PB2) 3718.4 0.000000e+00 2171/2250 (96%)
EPI222499 A/red-billed starling/Hong Kong/4925/2007 (A/H5N1) segment 1 (PB2) 3718.4 0.000000e+00 2151/2220 (96%)
EPI337125 A/Guangdong/2/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2170/2250 (96%)
EPI280022 A/Guangdong/2/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2170/2250 (96%)
EPI170737 A/chicken/Vietnam/200/2005 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2170/2250 (96%)
EPI126701 A/human/China/GD02/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2170/2250 (96%)
EPI107695 A/goose/Guangxi/1633/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2168/2247 (96%)
EPI107487 A/duck/Guangxi/288/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2168/2247 (96%)
EPI107475 A/duck/Guangxi/5165/2005 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2168/2247 (96%)
EPI107433 A/little egret/Hong Kong/718/2006 (A/H5N1) segment 1 (PB2) 3712.9 0.000000e+00 2168/2247 (96%)
EPI337938 A/Guangxi/1/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI227017 A/chicken/Ninh Binh/209/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI225095 A/duck/Nam Dinh/218/2006 (A/H5) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI225088 A/duck/Hai Phong /208/2006 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI221894 A/duck/Hunan/3/2007 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2170/2251 (96%)
EPI219383 A/whooper swan/Mongolia/6/2009 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2170/2251 (96%)
EPI170721 A/chicken/Vietnam/202/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170681 A/duck/Vietnam/207/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170673 A/duck/Vietnam/208/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170665 A/chicken/Vietnam/209/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170657 A/duck/Vietnam/210/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170650 A/Muscovy duck/Vietnam/211/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170643 A/chicken/Vietnam/212/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170636 A/Muscovy duck/Vietnam/213/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170629 A/duck/Vietnam/215/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170622 A/chicken/Vietnam/216/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170614 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170606 A/duck/Vietnam/218/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI170598 A/duck/Vietnam/219/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2169/2250 (96%)
EPI107483 A/duck/Guangxi/150/2006 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2167/2247 (96%)
EPI107467 A/goose/Guangxi/4513/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2167/2247 (96%)
EPI107463 A/goose/Guangxi/4289/2005 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2167/2247 (96%)
EPI246261 A/chicken/Korea/YAQ173/2008 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2169/2251 (96%)
EPI246260 A/chicken/Korea/USQ284/2008 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2169/2251 (96%)
EPI222487 A/pika/Qinghai/SHK/2007 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2166/2247 (96%)
EPI164322 A/goose/Yunnan/4985/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2168/2250 (96%)
EPI164314 A/goose/Yunnan/4389/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2168/2250 (96%)
EPI164306 A/goose/Yunnan/4371/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2168/2250 (96%)
EPI164274 A/duck/Yunnan/4873/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2168/2250 (96%)
EPI107697 A/duck/Guangxi/1830/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2166/2247 (96%)
EPI107659 A/goose/Guiyang/1461/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2166/2247 (96%)
EPI107527 A/duck/Hunan/5152/2005 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2166/2247 (96%)
EPI107525 A/duck/Hunan/5106/2005 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2166/2247 (96%)
EPI107435 A/chicken/Hong Kong/947/2006 (A/H5N1) segment 1 (PB2) 3701.8 0.000000e+00 2164/2244 (96%)
EPI276027 A/duck/Yunnan/47/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2167/2250 (96%)
EPI222023 A/environment/Hunan/5-25/2007 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2168/2251 (96%)
EPI220338 A/chicken/Primorje/1/2008 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2168/2251 (96%)
EPI186943 A/grebe/Tyva/3/2009 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2168/2251 (96%)
EPI173064 A/chicken/Primorsky/85/2008 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2168/2251 (96%)
EPI164298 A/goose/Yunnan/3798/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2167/2250 (96%)
EPI152393 A/whooper swan/Hokkaido/1/2008 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2168/2251 (96%)
EPI107685 A/chicken/Guangxi/1212/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2165/2247 (96%)
EPI107671 A/goose/Guiyang/765/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2165/2247 (96%)
EPI107503 A/chicken/Guiyang/29/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2163/2244 (96%)
EPI107477 A/duck/Guangxi/5270/2005 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2165/2247 (96%)
EPI107469 A/duck/Guangxi/4830/2005 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2165/2247 (96%)

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PostPosted: Sun Jan 08, 2012 10:31 am 
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Posts: 46829
Location: Pittsburgh, PA USA
PB2 Nonsynonymous changes include
E65D
S108N
K312R
M473L
V480I
A588T
V649I
T682A

(no E627K)

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PostPosted: Sun Jan 08, 2012 10:38 am 
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Posts: 46829
Location: Pittsburgh, PA USA
Top 100 PB1
EPI347308 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%)
EPI336988 A/duck/Zhejiang/2248/2011 (A/H5N1) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%)
EPI336986 A/duck/Zhejiang/2244/2011 (A/H5N1) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%)
EPI336985 A/duck/Zhejiang/2243/2011 (A/H5N1) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%)
EPI336984 A/duck/Zhejiang/2242/2011 (A/H5N1) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%)
EPI336983 A/duck/Zhejiang/224/2011 (A/H5N1) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%)
EPI336982 A/duck/Zhejiang/213/2011 (A/H5N1) segment 2 (PB1) 4058.2 0.000000e+00 2248/2274 (98%)
EPI168054 A/magpie robin/Hong Kong/1897/2008 (A/H5N1) segment 2 (PB1) 3986.2 0.000000e+00 2236/2275 (98%)
EPI168038 A/grey heron/Hong Kong/1046/2008 (A/H5N1) segment 2 (PB1) 3986.2 0.000000e+00 2236/2275 (98%)
EPI337229 A/Hubei/1/2010 (A/H5N1) segment 2 (PB1) 3977.0 0.000000e+00 2235/2276 (98%)
EPI267030 A/Hubei/1/2010 (A/H5N1) segment 2 (PB1) 3977.0 0.000000e+00 2235/2276 (98%)
EPI168046 A/magpie robin/Hong Kong/1097/2008 (A/H5N1) segment 2 (PB1) 3975.1 0.000000e+00 2234/2275 (98%)
EPI168030 A/great egret/Hong Kong/807/2008 (A/H5N1) segment 2 (PB1) 3958.5 0.000000e+00 2231/2275 (98%)
EPI168006 A/grey heron/Hong Kong/3088/2007 (A/H5N1) segment 2 (PB1) 3958.5 0.000000e+00 2231/2275 (98%)
EPI337215 A/Guangxi/1/2009 (A/H5N1) segment 2 (PB1) 3930.8 0.000000e+00 2224/2272 (97%)
EPI280086 A/Guangxi/1/2009 (A/H5N1) segment 2 (PB1) 3927.1 0.000000e+00 2223/2272 (97%)
EPI111214 A/little egret/Hong Kong/718/2006 (A/H5N1) segment 2 (PB1) 3897.6 0.000000e+00 2221/2276 (97%)
EPI111216 A/chicken/Hong Kong/947/2006 (A/H5N1) segment 2 (PB1) 3886.5 0.000000e+00 2215/2270 (97%)
EPI111208 A/magpie robin/Hong Kong/366/2006 (A/H5N1) segment 2 (PB1) 3886.5 0.000000e+00 2219/2276 (97%)
EPI180949 A/duck/Laos/25/2006 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2218/2276 (97%)
EPI170621 A/chicken/Vietnam/216/2005 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2218/2276 (97%)
EPI111252 A/chicken/Guangxi/4989/2005 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2216/2273 (97%)
EPI111244 A/goose/Guangxi/4289/2005 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2218/2276 (97%)
EPI111204 A/magpie robin/Hong Kong/75/2006 (A/H5N1) segment 2 (PB1) 3880.9 0.000000e+00 2218/2276 (97%)
EPI225094 A/duck/Nam Dinh/218/2006 (A/H5) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI221578 A/Daurian starling/Hong Kong/1532/2007 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2216/2275 (97%)
EPI170664 A/chicken/Vietnam/209/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170656 A/duck/Vietnam/210/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170649 A/Muscovy duck/Vietnam/211/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170642 A/chicken/Vietnam/212/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170635 A/Muscovy duck/Vietnam/213/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170613 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170605 A/duck/Vietnam/218/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI170597 A/duck/Vietnam/219/2005 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI164548 A/duck/Laos/P0050/2007 (A/H5N1) segment 2 (PB1) 3875.4 0.000000e+00 2217/2276 (97%)
EPI337087 A/Hunan/1/2006 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%)
EPI280094 A/Hunan/1/2006 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%)
EPI227016 A/chicken/Ninh Binh/209/2005 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%)
EPI167888 A/peregrine falcon/Hong Kong/1143/2007 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%)
EPI164299 A/goose/Yunnan/3798/2006 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%)
EPI111266 A/goose/Guangxi/224/2006 (A/H5N1) segment 2 (PB1) 3869.9 0.000000e+00 2214/2273 (97%)
EPI164307 A/goose/Yunnan/4371/2006 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2215/2276 (97%)
EPI111454 A/duck/Guiyang/1081/2006 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2215/2276 (97%)
EPI111452 A/goose/Guiyang/765/2006 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2215/2276 (97%)
EPI111308 A/duck/Hunan/5152/2005 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2211/2270 (97%)
EPI111306 A/duck/Hunan/5106/2005 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2211/2270 (97%)
EPI111262 A/duck/Guangxi/5457/2005 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2213/2273 (97%)
EPI111248 A/goose/Guangxi/4513/2005 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2205/2261 (97%)
EPI111246 A/duck/Guangxi/4428/2005 (A/H5N1) segment 2 (PB1) 3864.3 0.000000e+00 2213/2273 (97%)
EPI337939 A/Guangxi/1/2005 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI337126 A/Guangdong/2/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI280023 A/Guangdong/2/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI270186 A/Vietnam/UT30850/2005 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2212/2273 (97%)
EPI164371 A/goose/Yunnan/6193/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI164323 A/goose/Yunnan/4985/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI164315 A/goose/Yunnan/4389/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI126699 A/human/China/GD02/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI113328 A/Shenzhen/406H/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI111468 A/duck/Guangxi/1258/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI111264 A/duck/Guangxi/150/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2210/2270 (97%)
EPI111258 A/duck/Guangxi/5270/2005 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2202/2258 (97%)
EPI111206 A/chicken/Hong Kong/282/2006 (A/H5N1) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%)
EPI170720 A/chicken/Vietnam/202/2005 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI170628 A/duck/Vietnam/215/2005 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI167713 A/chicken/Laos/NCVD-38/2007 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI167685 A/duck/Vietnam/NCVD-31/2007 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI164291 A/duck/Yunnan/6490/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI164275 A/duck/Yunnan/4873/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2214/2277 (97%)
EPI164219 A/Anhui/1/2005 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI111482 A/chicken/Guangxi/1951/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI111444 A/goose/Guiyang/1636/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%)
EPI111288 A/duck/Guiyang/497/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2211/2273 (97%)
EPI111284 A/chicken/Guiyang/29/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2211/2273 (97%)
EPI111278 A/duck/Guangxi/804/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2210/2271 (97%)
EPI111270 A/duck/Guangxi/392/2006 (A/H5N1) segment 2 (PB1) 3853.2 0.000000e+00 2209/2270 (97%)
EPI337057 A/Anhui/1/2005 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2210/2273 (97%)
EPI285824 A/avian/Hong Kong/0828/2007 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI275980 A/duck/Hubei/49/2005 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI170680 A/duck/Vietnam/207/2005 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI167895 A/house crow/Hong Kong/1203/2007 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI164564 A/chicken/Laos/P0169/2007 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI139958 A/Duck/Fujian/1734/05 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2210/2273 (97%)
EPI111440 A/goose/Guiyang/1461/2006 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2212/2276 (97%)
EPI111276 A/duck/Guangxi/744/2006 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2208/2270 (97%)
EPI111268 A/duck/Guangxi/288/2006 (A/H5N1) segment 2 (PB1) 3847.7 0.000000e+00 2210/2273 (97%)
EPI167998 A/little egret/Hong Kong/8863/2007 (A/H5N1) segment 2 (PB1) 3844.0 0.000000e+00 2205/2267 (97%)
EPI337269 A/environment/Guizhou/2/2009 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI337139 A/Anhui/1/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI285825 A/avian/Hong Kong/2372/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2207/2270 (97%)
EPI285823 A/avian/Hong Kong/0719/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2207/2270 (97%)
EPI280030 A/Anhui/1/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI222024 A/environment/Hunan/5-25/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI180810 A/pigeon/Laos/P0022/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI167951 A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2210/2275 (97%)
EPI164540 A/chicken/Laos/P0020/2007 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI111450 A/duck/Hunan/1204/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI111432 A/chicken/Guiyang/3923/2005 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2211/2276 (97%)
EPI111354 A/chicken/Guangxi/683/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2207/2270 (97%)
EPI111286 A/duck/Guiyang/293/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2209/2273 (97%)
EPI111274 A/duck/Guangxi/619/2006 (A/H5N1) segment 2 (PB1) 3842.2 0.000000e+00 2207/2270 (97%)

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PostPosted: Sun Jan 08, 2012 10:42 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 46829
Location: Pittsburgh, PA USA
Top 100 PA matches
EPI347460 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 3 (PA) 3943.7 0.000000e+00 2137/2137 (100%)
EPI336995 A/duck/Zhejiang/2248/2011 (A/H5N1) segment 3 (PA) 3866.2 0.000000e+00 2122/2137 (99%)
EPI336993 A/duck/Zhejiang/2244/2011 (A/H5N1) segment 3 (PA) 3866.2 0.000000e+00 2122/2137 (99%)
EPI336992 A/duck/Zhejiang/2243/2011 (A/H5N1) segment 3 (PA) 3866.2 0.000000e+00 2122/2137 (99%)
EPI336991 A/duck/Zhejiang/2242/2011 (A/H5N1) segment 3 (PA) 3866.2 0.000000e+00 2122/2137 (99%)
EPI336990 A/duck/Zhejiang/224/2011 (A/H5N1) segment 3 (PA) 3866.2 0.000000e+00 2122/2137 (99%)
EPI336989 A/duck/Zhejiang/213/2011 (A/H5N1) segment 3 (PA) 3849.5 0.000000e+00 2119/2137 (99%)
EPI337216 A/Guangxi/1/2009 (A/H5N1) segment 3 (PA) 3827.4 0.000000e+00 2115/2137 (98%)
EPI280084 A/Guangxi/1/2009 (A/H5N1) segment 3 (PA) 3827.4 0.000000e+00 2115/2137 (98%)
EPI168039 A/grey heron/Hong Kong/1046/2008 (A/H5N1) segment 3 (PA) 3827.4 0.000000e+00 2115/2137 (98%)
EPI168007 A/grey heron/Hong Kong/3088/2007 (A/H5N1) segment 3 (PA) 3805.2 0.000000e+00 2111/2137 (98%)
EPI168055 A/magpie robin/Hong Kong/1897/2008 (A/H5N1) segment 3 (PA) 3794.1 0.000000e+00 2109/2137 (98%)
EPI168047 A/magpie robin/Hong Kong/1097/2008 (A/H5N1) segment 3 (PA) 3794.1 0.000000e+00 2109/2137 (98%)
EPI168031 A/great egret/Hong Kong/807/2008 (A/H5N1) segment 3 (PA) 3783.1 0.000000e+00 2107/2137 (98%)
EPI337230 A/Hubei/1/2010 (A/H5N1) segment 3 (PA) 3749.8 0.000000e+00 2101/2137 (98%)
EPI267028 A/Hubei/1/2010 (A/H5N1) segment 3 (PA) 3749.8 0.000000e+00 2101/2137 (98%)
EPI337127 A/Guangdong/2/2006 (A/H5N1) segment 3 (PA) 3705.5 0.000000e+00 2093/2137 (97%)
EPI280021 A/Guangdong/2/2006 (A/H5N1) segment 3 (PA) 3705.5 0.000000e+00 2093/2137 (97%)
EPI126697 A/human/China/GD02/2006 (A/H5N1) segment 3 (PA) 3705.5 0.000000e+00 2093/2137 (97%)
EPI113326 A/Shenzhen/406H/2006 (A/H5N1) segment 3 (PA) 3705.5 0.000000e+00 2093/2137 (97%)
EPI113026 A/little egret/Hong Kong/718/2006 (A/H5N1) segment 3 (PA) 3705.5 0.000000e+00 2093/2137 (97%)
EPI227015 A/chicken/Ninh Binh/209/2005 (A/H5N1) segment 3 (PA) 3700.0 0.000000e+00 2092/2137 (97%)
EPI170663 A/chicken/Vietnam/209/2005 (A/H5N1) segment 3 (PA) 3700.0 0.000000e+00 2092/2137 (97%)
EPI170641 A/chicken/Vietnam/212/2005 (A/H5N1) segment 3 (PA) 3700.0 0.000000e+00 2092/2137 (97%)
EPI225093 A/duck/Nam Dinh/218/2006 (A/H5) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI224970 A/chicken/Hong Kong/D-06-0947/2006 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2092/2138 (97%)
EPI170655 A/duck/Vietnam/210/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170648 A/Muscovy duck/Vietnam/211/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170634 A/Muscovy duck/Vietnam/213/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170620 A/chicken/Vietnam/216/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170612 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170604 A/duck/Vietnam/218/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI170596 A/duck/Vietnam/219/2005 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI113028 A/chicken/Hong Kong/947/2006 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2092/2138 (97%)
EPI113020 A/magpie robin/Hong Kong/366/2006 (A/H5N1) segment 3 (PA) 3694.4 0.000000e+00 2091/2137 (97%)
EPI222501 A/red-billed starling/Hong Kong/4925/2007 (A/H5N1) segment 3 (PA) 3692.6 0.000000e+00 2080/2121 (98%)
EPI167968 A/common magpie/Hong Kong/5052/2007 (A/H5N1) segment 3 (PA) 3692.6 0.000000e+00 2080/2121 (98%)
EPI270187 A/Vietnam/UT30850/2005 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2088/2134 (97%)
EPI246275 A/duck/Korea/NSQ263/2008 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI246271 A/chicken/Korea/ISQ250/2008 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI220340 A/chicken/Primorje/1/2008 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI173066 A/chicken/Primorsky/85/2008 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI170719 A/chicken/Vietnam/202/2005 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI170679 A/duck/Vietnam/207/2005 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI113074 A/duck/Guangxi/5457/2005 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI113018 A/chicken/Hong Kong/282/2006 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI113016 A/magpie robin/Hong Kong/75/2006 (A/H5N1) segment 3 (PA) 3688.9 0.000000e+00 2090/2137 (97%)
EPI167983 A/house crow/Hong Kong/5288/2007 (A/H5N1) segment 3 (PA) 3687.0 0.000000e+00 2079/2121 (98%)
EPI246270 A/chicken/Korea/Gimje/2008 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI170627 A/duck/Vietnam/215/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI152395 A/whooper swan/Hokkaido/1/2008 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113120 A/duck/Hunan/5152/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113118 A/duck/Hunan/5106/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113068 A/duck/Guangxi/5165/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113064 A/chicken/Guangxi/4989/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113060 A/goose/Guangxi/4513/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113058 A/duck/Guangxi/4428/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI113056 A/goose/Guangxi/4289/2005 (A/H5N1) segment 3 (PA) 3683.3 0.000000e+00 2089/2137 (97%)
EPI170695 A/duck/Vietnam/205/2005 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI170671 A/duck/Vietnam/208/2005 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI167991 A/little egret/Hong Kong/8550/2007 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI167889 A/peregrine falcon/Hong Kong/1143/2007 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI164581 A/whooper swan/Aomori/1/2008 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI164372 A/goose/Yunnan/6193/2006 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI113096 A/chicken/Guiyang/29/2006 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI113076 A/duck/Guangxi/150/2006 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI113070 A/duck/Guangxi/5270/2005 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI113062 A/duck/Guangxi/4830/2005 (A/H5N1) segment 3 (PA) 3677.8 0.000000e+00 2088/2137 (97%)
EPI222033 A/environment/Hunan/5-32/2007 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI220270 A/black-crowned night heron/Hong Kong/659/2008 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI168015 A/common buzzard/Hong Kong/9213/2007 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2088/2138 (97%)
EPI164589 A/whooper swan/Aomori/2/2008 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI164292 A/duck/Yunnan/6490/2006 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI113266 A/duck/Guiyang/1081/2006 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI113264 A/goose/Guiyang/765/2006 (A/H5N1) segment 3 (PA) 3672.3 0.000000e+00 2087/2137 (97%)
EPI337940 A/Guangxi/1/2005 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI337088 A/Hunan/1/2006 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI280092 A/Hunan/1/2006 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI246273 A/chicken/Korea/YAQ173/2008 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI222025 A/environment/Hunan/5-25/2007 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI221743 A/chicken/Hunan/3/2007 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI164263 A/Guangxi/1/2005 (A/H5N1) segment 3 (PA) 3666.7 0.000000e+00 2086/2137 (97%)
EPI113066 A/duck/Guangxi/5075/2005 (A/H5N1) segment 3 (PA) 3664.9 0.000000e+00 2081/2130 (97%)
EPI221896 A/duck/Hunan/3/2007 (A/H5N1) segment 3 (PA) 3661.2 0.000000e+00 2085/2137 (97%)
EPI161545 A/whooper swan/Akita/1/2008 (A/H5N1) segment 3 (PA) 3661.2 0.000000e+00 2085/2137 (97%)
EPI113290 A/duck/Guangxi/1830/2006 (A/H5N1) segment 3 (PA) 3661.2 0.000000e+00 2085/2137 (97%)
EPI113260 A/goose/Guiyang/1794/2006 (A/H5N1) segment 3 (PA) 3661.2 0.000000e+00 2085/2137 (97%)
EPI113080 A/duck/Guangxi/288/2006 (A/H5N1) segment 3 (PA) 3661.2 0.000000e+00 2085/2137 (97%)
EPI221579 A/Daurian starling/Hong Kong/1532/2007 (A/H5N1) segment 3 (PA) 3659.3 0.000000e+00 2062/2103 (98%)
EPI167999 A/little egret/Hong Kong/8863/2007 (A/H5N1) segment 3 (PA) 3659.3 0.000000e+00 2075/2122 (97%)
EPI220521 A/environment/Hunan/6-45/2008 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2084/2137 (97%)
EPI164316 A/goose/Yunnan/4389/2006 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2085/2138 (97%)
EPI164308 A/goose/Yunnan/4371/2006 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2085/2138 (97%)
EPI113286 A/duck/Guangxi/1550/2006 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2084/2137 (97%)
EPI113256 A/goose/Guiyang/1636/2006 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2084/2137 (97%)
EPI113078 A/goose/Guangxi/224/2006 (A/H5N1) segment 3 (PA) 3655.6 0.000000e+00 2084/2137 (97%)
EPI113090 A/duck/Guangxi/804/2006 (A/H5N1) segment 3 (PA) 3653.8 0.000000e+00 2079/2130 (97%)
EPI113088 A/duck/Guangxi/744/2006 (A/H5N1) segment 3 (PA) 3653.8 0.000000e+00 2081/2132 (97%)
EPI113086 A/duck/Guangxi/619/2006 (A/H5N1) segment 3 (PA) 3653.8 0.000000e+00 2079/2130 (97%)
EPI113084 A/goose/Guangxi/582/2006 (A/H5N1) segment 3 (PA) 3653.8 0.000000e+00 2079/2130 (97%)

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PostPosted: Sun Jan 08, 2012 10:45 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 46829
Location: Pittsburgh, PA USA
Top 100 NP matches
EPI347307 A/Guangdong-Shenzhen/1/2011(H5N1) (A/H5N1) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI337009 A/duck/Zhejiang/2248/2011 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI337007 A/duck/Zhejiang/2244/2011 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI337006 A/duck/Zhejiang/2243/2011 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI337004 A/duck/Zhejiang/224/2011 (A/H5N1) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI337005 A/duck/Zhejiang/2242/2011 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI337003 A/duck/Zhejiang/213/2011 (A/H5N1) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI168049 A/magpie robin/Hong Kong/1097/2008 (A/H5N1) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%)
EPI168057 A/magpie robin/Hong Kong/1897/2008 (A/H5N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI168041 A/grey heron/Hong Kong/1046/2008 (A/H5N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI337218 A/Guangxi/1/2009 (A/H5N1) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%)
EPI280082 A/Guangxi/1/2009 (A/H5N1) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%)
EPI220272 A/black-crowned night heron/Hong Kong/659/2008 (A/H5N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI168009 A/grey heron/Hong Kong/3088/2007 (A/H5N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI168033 A/great egret/Hong Kong/807/2008 (A/H5N1) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%)
EPI337304 A/water/Xinjiang/3/2009 (A/H5N1) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI280249 A/water/Xinjiang/3/2009 (A/H5N1) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI168017 A/common buzzard/Hong Kong/9213/2007 (A/H5N1) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI167993 A/little egret/Hong Kong/8550/2007 (A/H5N1) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI337204 A/Xinjiang/1/2009 (A/H5N1) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI280068 A/Xinjiang/1/2009 (A/H5N1) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI167891 A/peregrine falcon/Hong Kong/1143/2007 (A/H5N1) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%)
EPI112261 A/magpie robin/Hong Kong/75/2006 (A/H5N1) segment 5 (NP) 2549.5 0.000000e+00 1456/1494 (97%)
EPI337129 A/Guangdong/2/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI280019 A/Guangdong/2/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI225084 A/duck/Hai Phong /208/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI170717 A/chicken/Vietnam/202/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI170693 A/duck/Vietnam/205/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI170677 A/duck/Vietnam/207/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI170669 A/duck/Vietnam/208/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI170625 A/duck/Vietnam/215/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI164302 A/goose/Yunnan/3798/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI126695 A/human/China/GD02/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI112321 A/duck/Guangxi/150/2006 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1455/1494 (97%)
EPI112313 A/duck/Guangxi/5165/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%)
EPI112307 A/duck/Guangxi/4830/2005 (A/H5N1) segment 5 (NP) 2544.0 0.000000e+00 1455/1494 (97%)
EPI337941 A/Guangxi/1/2005 (A/H5N1) segment 5 (NP) 2540.3 0.000000e+00 1455/1495 (97%)
EPI286564 A/muscovy duck/Ha Nam/07-47/2007 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI286171 A/duck/Nam Dinh/07-55/2007 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI270197 A/Vietnam/UT31203A/2007 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI227013 A/chicken/Ninh Binh/209/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI170661 A/chicken/Vietnam/209/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI170653 A/duck/Vietnam/210/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI170646 A/Muscovy duck/Vietnam/211/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI170639 A/chicken/Vietnam/212/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI170632 A/Muscovy duck/Vietnam/213/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI164334 A/goose/Yunnan/5141/2006 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%)
EPI112319 A/duck/Guangxi/5457/2005 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1454/1494 (97%)
EPI112273 A/chicken/Hong Kong/947/2006 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1452/1491 (97%)
EPI337089 A/Hunan/1/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI286169 A/duck/Nghe An/07-49/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI280089 A/Hunan/1/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI276031 A/duck/Yunnan/47/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI270221 A/Vietnam/UT31244III/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI225091 A/duck/Nam Dinh/218/2006 (A/H5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI180952 A/duck/Laos/25/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI180856 A/chicken/Laos/A0464/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI180813 A/pigeon/Laos/P0022/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI170618 A/chicken/Vietnam/216/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI170610 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI170602 A/duck/Vietnam/218/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI170594 A/duck/Vietnam/219/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI168001 A/little egret/Hong Kong/8863/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1449/1488 (97%)
EPI164318 A/goose/Yunnan/4389/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI164310 A/goose/Yunnan/4371/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI164294 A/duck/Yunnan/6490/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI164196 A/muscovy duck/Vietnam/NCVD-67/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI164172 A/muscovy duck/Vietnam/NCVD-51/2007 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160550 A/duck/Vietnam/NCVD-81/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160510 A/duck/Vietnam/NCVD-68/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160502 A/duck/Vietnam/NCVD-65/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160494 A/duck/Vietnam/NCVD-64/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160438 A/duck/Vietnam/NCVD-57/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160430 A/duck/Vietnam/NCVD-56/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI160422 A/duck/Vietnam/NCVD-55/07 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI113322 A/Shenzhen/406H/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1449/1488 (97%)
EPI112341 A/chicken/Guiyang/29/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%)
EPI112325 A/duck/Guangxi/288/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1451/1491 (97%)
EPI112315 A/duck/Guangxi/5270/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1449/1488 (97%)
EPI112305 A/goose/Guangxi/4513/2005 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1449/1488 (97%)
EPI112271 A/little egret/Hong Kong/718/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1449/1488 (97%)
EPI112263 A/chicken/Hong Kong/282/2006 (A/H5N1) segment 5 (NP) 2532.9 0.000000e+00 1447/1485 (97%)
EPI337148 A/Fujian/1/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI286159 A/avian/Hong Kong/1993/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI286158 A/avian/Hong Kong/2372/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI286156 A/avian/Hong Kong/0719/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI286155 A/avian/Hong Kong/2065/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI280129 A/Fujian/1/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI275999 A/duck/Hunan/29/2006 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%)
EPI275463 A/Guangxi/1/2005 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI270237 A/Vietnam/HN31388M1/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI270213 A/Vietnam/UT31244II/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI270205 A/Vietnam/UT31239/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI270189 A/Vietnam/UT30850/2005 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1452/1494 (97%)
EPI180832 A/duck/Laos/P0117/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI180824 A/duck/Laos/P0127/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI167922 A/common kestrel/Hong Kong/2372/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI167773 A/Muscovy duck/Vietnam/NCVD-46/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI167767 A/chicken/Vietnam/NCVD-45/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)
EPI167723 A/goose/Laos/NCVD-39/2007 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%)

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