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PostPosted: Fri Dec 30, 2011 1:17 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27403
Location: Pittsburgh, PA USA
A1569G
EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI340355 A/black-billed magpie/Guangxi/29/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI340347 A/black-billed magpie/Guangxi/30/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI340339 A/black-billed magpie/Guangxi/31/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI314398 A/chicken/Shanghai/Q0707/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI300739 A/swine/Shandong/fHZ/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI295811 A/swine/Shandong/3/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI272231 A/chicken/Shandong/SG1/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI272230 A/chicken/Shandong/FX/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI272229 A/chicken/Shandong/WL/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI272228 A/chicken/Shandong/HY/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI272227 A/chicken/Shandong/PD/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI270278 A/chicken/Hebei/C4/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI270277 A/chicken/Hebei/7/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI270086 A/chicken/Hebei/Y2/2009 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI270085 A/chicken/Hebei/A/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI270078 A/chicken/Henan/1.2/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI269608 A/canine/Korea/LBM412/2008 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI246035 A/chicken/Hebei/4/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243528 A/feces/Hunan/2-28/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243512 A/environment/Hunan/2-84/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243504 A/environment/Hunan/1-81/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243496 A/environment/Hunan/1-70/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243488 A/environment/Hunan/1-23/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI243480 A/environment/Hunan/1-18/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI238801 A/chicken/Henan/nd/1998 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI238759 A/Chicken/Shanghai/F/98 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI238416 A/chicken/Jiangsu/1/1999 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI238400 A/chicken/Beijing/ne/1999 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI236656 A/chicken/Yunnan/nh/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI236647 A/chicken/Jiangsu/ng/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI236626 A/chicken/Henan/ni/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235881 A/duck/Jiangsu/nf/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235854 A/chicken/Neimonggu/nk/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235796 A/chicken/Jiangsu/wa/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235772 A/chicken/Hunan/774/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235748 A/chicken/Henan/1/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235745 A/chicken/Hebei/nj/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235718 A/chicken/Beijing/nl/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235336 A/swine/Shandong/fZC/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235320 A/swine/Shandong/fLS/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235312 A/swine/Shandong/fJN/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235304 A/swine/Shandong/fHZ/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235297 A/swine/Shandong/w4/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235286 A/swine/Shandong/nb/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI235277 A/swine/Shandong/na/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI234985 A/chicken/Henan/1/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI229404 A/chicken/Jiangsu/1/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI229396 A/chicken/Henan/2/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI229388 A/chicken/Henan/1/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI228483 A/chicken/Guangxi/2441/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI228475 A/chicken/Guangxi/1857/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI226967 A/chicken/Henan/1/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI221991 A/environment/Hunan/1-35/2007 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI191080 A/duck/Zhejiang/3/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI191072 A/duck/Jiangsu/9/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI191064 A/duck/Jiangsu/3/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI186189 A/chicken/Shanghai/Y2/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI186183 A/chicken/Shanghai/Y1/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI177862 A/chicken/Jiangsu/7/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI177850 A/chicken/Jiangsu/7/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI177585 A/swine/Hong Kong/NS1659/2001 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI170831 A/chicken/Shandong/B4/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI170826 A/chicken/Henan/L1/2008 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165385 A/chicken/Shanghai/2/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165377 A/chicken/Shanghai/1/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165369 A/chicken/Shanghai/16/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165361 A/chicken/Shanghai/14/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165353 A/chicken/Shanghai/12/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165345 A/chicken/Shanghai/7/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165337 A/chicken/Shanghai/2/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165329 A/chicken/Shanghai/1/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165321 A/chicken/Shanghai/3/2000 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI165313 A/chicken/Shanghai/2/1999 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI161621 A/chicken/Jiangsu/L1/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI139542 A/Duck/Shantou/2102/00 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI127440 A/chicken/Hubei/C1/2007 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122655 A/swine/Guangxi/S15/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122653 A/swine/Guangxi/S11/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122619 A/bird/Guangxi/H1/2006 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122617 A/swine/Guangxi/FS2/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122581 A/bird/Guangxi/83/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122579 A/quail/Guangxi/B1/2006 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122541 A/bird/Guangxi/82/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122539 A/bird/Guangxi/62/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122495 A/duck/Guangxi/51/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI122429 A/chicken/Guangxi/37/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105770 A/duck/Nanjing/01/1999 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105760 A/duck/Xuzhou/05/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105750 A/duck/Xuzhou/07/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105742 A/duck/Zhejiang/03/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI82156 A/chicken/Shanghai/10/01 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI82134 A/chicken/Heilongjiang/48/01 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI82122 A/chicken/Guangdong/56/01 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66859 A/chukkar/Shantou/4635/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66783 A/partridge/Shantou/4321/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66631 A/partridge/Shantou/3487/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66441 A/duck/Shantou/515/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66403 A/duck/Shantou/3728/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66365 A/duck/Shantou/3577/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI66004 A/chicken/Hunan/6108/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI65966 A/chicken/Hunan/5260/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI65947 A/chicken/Hunan/4444/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI65719 A/chicken/Guangxi/187/2005 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64645 A/chicken/Shantou/99/2004 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64626 A/chicken/Shantou/4617/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64607 A/silky chicken/Shantou/4600/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64588 A/chicken/Shantou/4435/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64569 A/chicken/Shantou/4101/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64550 A/chicken/Shantou/3341/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI64531 A/chicken/Shantou/3040/2003 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI21380 A/duck/Shanghai/35/2002 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI10957 A/Duck/Shantou/1605/01 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI1528 A/chicken/Yokohama/aq134/2002 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI1492 A/chicken/Osaka/aq69/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI1456 A/chicken/Kobe/aq26/2001 (A/H9N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

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PostPosted: Fri Dec 30, 2011 1:27 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27403
Location: Pittsburgh, PA USA
G1932A
EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI312702 A/swine/North Carolina/239108/2010 (A/H1N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

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PostPosted: Fri Dec 30, 2011 1:42 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27403
Location: Pittsburgh, PA USA
T2001C (NOT T637N)

EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291880 A/South Dakota/03/2008 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291810 A/Iowa/05/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI180353 A/duck/Primorie/2621/01 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI117869 A/ostrich/South Africa/AI1091/2006 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105949 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100296 A/goose/Guangxi/2112/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100284 A/duck/Guangxi/1311/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI25653 A/chicken/TX/167280-4/02 (A/H5N3) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

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PostPosted: Fri Dec 30, 2011 1:48 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27403
Location: Pittsburgh, PA USA
niman wrote:
T2001C (NOT T637N)

EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291880 A/South Dakota/03/2008 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291810 A/Iowa/05/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI180353 A/duck/Primorie/2621/01 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI117869 A/ostrich/South Africa/AI1091/2006 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105949 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100296 A/goose/Guangxi/2112/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100284 A/duck/Guangxi/1311/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI25653 A/chicken/TX/167280-4/02 (A/H5N3) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

Table 1. Demographic and Exposure Characteristics of 11 Patients Infected with Triple-Reassortant Swine Influenza A (H1) Viruses.
Patient
No. Age Sex
State of
Residence
Date of
Illness Onset
Estimated
Incubation Period Exposure*
Ill Swine
Present
1 17 yr M WI Dec. 2005 3 days Butchered a pig (direct contact) Not known
2 7 yr M MO Jan. 2006 Not known Reported no contact with a pig
(unknown contact)
Not known
3 4 yr F IA Nov. 2006 7–10 days Had contact with patient with suspected
case of swine influenza
(epidemiologically linked contact)
Yes
4 10 yr F OH Aug. 2007 3–4 days Exhibited swine at fair, handled pigs
(direct contact)
Yes
5 36 yr M OH Aug. 2007 3–4 days Exhibited swine at fair, handled pigs
(direct contact)
Yes
6 48 yr F IL Aug. 2007 7 days Visited fair, did not stop at pigpen
(near vicinity)
Yes
7 16 mo M MI Aug. 2007 7 days Visited fair, came within 1 m of pigs
(close proximity)
Yes
8 2 yr M IA Nov. 2007 1–10 days Lived on swine farm, came within
1 m of pigs (close proximity)
Yes
9 26 yr F MN Jan. 2008 9 days Visited live-animal market, came within
1 m of pigpen (close proximity)
Not known
10 14 yr M TX Oct. 2008 3 days Visited a swine farm, brought home
and handled a pig (direct contact)
Yes
11 3 yr M IA Feb. 2009 1–10 days Visited swine farm owned by his family,
touched pigs (direct contact)
Yes
* Direct contact refers to touching or handling a pig; close proximity refers to standing within 1.83 m (6 ft) of a pig, without known direct contact;
near vicinity refers to presence of pigs on the premises but not in close proximity; epidemiologically linked refers to a person who is
epidemiologically linked to another person with a confirmed or suspected infection; and unknown refers to unknown contact or unavailable
contact information.
http://www.nejm.org/doi/pdf/10.1056/NEJMoa0903812

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PostPosted: Fri Dec 30, 2011 1:54 am 
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niman wrote:
T2001C (NOT T637N)

EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291880 A/South Dakota/03/2008 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291810 A/Iowa/05/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI180353 A/duck/Primorie/2621/01 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI117869 A/ostrich/South Africa/AI1091/2006 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105949 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100296 A/goose/Guangxi/2112/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100284 A/duck/Guangxi/1311/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI25653 A/chicken/TX/167280-4/02 (A/H5N3) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

trH1N1 Transmission In South Dakota Prior to 2009 Pandemic
Recombinomics Commentary 14:11
September 16, 2011

Of 99 event pig-exposed students, 72 (73%) participated in the investigation, and 42 (42%) provided serum samples, of whom 17 (40%) were seropositive and 5 (12%) met case criteria. Of 9 students exposed to other pigs, 2 (22%) were seropositive. Of 8 index case-exposed persons and 10 without exposures, none were seropositive. Pig-exposed persons were more likely to be seropositive than persons without pig exposure (37% vs 0%, P < .01).
The results above are from a recent 2011 paper entitled, “A Pre-Pandemic Outbreak of Triple-Reassortant Swine Influenza Virus Infection Among University Students, South Dakota, 2008”, which demonstrate the ease of transmission of a trH1N1 in late 2008 (40% of tested samples from students with swine exposure had trH1N1 antibodies), prior to the 2009 H1N1 pandemic. These results were similar to the data from the Huron County Fair in Ohio in 2007 where trH1N1 was isolated (A/Ohio/02/2007 and A/Ohio/01/2007) from a presenter (10F) and her father (36M), respectively, and two dozen fair attendees had flu-like symptoms. These events signal efficient transmission of trH1N1 to humans.

Sequences from the H1N1 isolate, A/South Dakota/03/2008, from the student (19M) have been released at GISAID and GenBank and these sequences create a clustering with other human cases identified prior to the 2009, including several isolates from Iowa (most closely related HA sequence, , A/Iowa/05/2007, was from a 2M, who lived on a farm and was in close proximity to swine. The clustering signaled evolution toward human transmission.........

http://www.recombinomics.com/News/09161 ... _2008.html

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PostPosted: Fri Dec 30, 2011 2:48 am 
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Posts: 27403
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niman wrote:
niman wrote:
T2001C (NOT T637N)

EPI346913 A/Wisconsin/28/2011 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291880 A/South Dakota/03/2008 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI291810 A/Iowa/05/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI180353 A/duck/Primorie/2621/01 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI117869 A/ostrich/South Africa/AI1091/2006 (A/H5N2) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI105949 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100296 A/goose/Guangxi/2112/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI100284 A/duck/Guangxi/1311/2004 (A/H5N1) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)
EPI25653 A/chicken/TX/167280-4/02 (A/H5N3) segment 1 (PB2) 27.0 7.400712e+00 14/14 (100%)

trH1N1 Transmission In South Dakota Prior to 2009 Pandemic
Recombinomics Commentary 14:11
September 16, 2011

Of 99 event pig-exposed students, 72 (73%) participated in the investigation, and 42 (42%) provided serum samples, of whom 17 (40%) were seropositive and 5 (12%) met case criteria. Of 9 students exposed to other pigs, 2 (22%) were seropositive. Of 8 index case-exposed persons and 10 without exposures, none were seropositive. Pig-exposed persons were more likely to be seropositive than persons without pig exposure (37% vs 0%, P < .01).
The results above are from a recent 2011 paper entitled, “A Pre-Pandemic Outbreak of Triple-Reassortant Swine Influenza Virus Infection Among University Students, South Dakota, 2008”, which demonstrate the ease of transmission of a trH1N1 in late 2008 (40% of tested samples from students with swine exposure had trH1N1 antibodies), prior to the 2009 H1N1 pandemic. These results were similar to the data from the Huron County Fair in Ohio in 2007 where trH1N1 was isolated (A/Ohio/02/2007 and A/Ohio/01/2007) from a presenter (10F) and her father (36M), respectively, and two dozen fair attendees had flu-like symptoms. These events signal efficient transmission of trH1N1 to humans.

Sequences from the H1N1 isolate, A/South Dakota/03/2008, from the student (19M) have been released at GISAID and GenBank and these sequences create a clustering with other human cases identified prior to the 2009, including several isolates from Iowa (most closely related HA sequence, , A/Iowa/05/2007, was from a 2M, who lived on a farm and was in close proximity to swine. The clustering signaled evolution toward human transmission.........

http://www.recombinomics.com/News/09161 ... _2008.html

Thread on South Dakota/03/2008 here

viewtopic.php?f=5&t=7510&start=20

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PostPosted: Thu Jan 19, 2012 8:47 am 
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Posts: 27403
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niman wrote:
CDC has released sequences (at GISAID) from a novel trH1N1 cases in Wisconsin, A/Wisconsin/28/2011 .

JQ348836 Human 1 H1N1 USA 2011/12/01 2266 Influenza A virus (A/Wisconsin/28/2011(H1N1))
JQ348832 Human 2 H1N1 USA 2011/12/01 2274 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348831 Human 3 H1N1 USA 2011/12/01 2151 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348837 Human 4 H1N1 USA 2011/12/01 1701 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348830 Human 4 H1N1 USA 2011/12/01 704 Influenza A virus (A/Wisconsin/28/2011(H1N1))
JQ348833 Human 5 H1N1 USA 2011/12/01 1515 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348834 Human 6 H1N1 USA 2011/12/01 1410 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348829 Human 6 H1N1 USA 2011/12/01 576 Influenza A virus (A/Wisconsin/28/2011(H1N1))
JQ348838 Human 7 H1N1 USA 2011/12/01 982 Influenza A virus (A/Wisconsin/28/2011(H1N1)) yes
JQ348828 Human 8 H1N1 USA 2011/12/01 481 Influenza A virus (A/Wisconsin/28/2011(H1N1))

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