Rhiza Labs FluTracker Forum

The USDA has released a series of full sequences from swine isolates from 2010. None of the sequences had H1N1pdm09 MP. However, in 2010 there were 6 human H3N2v cases (up from 2 in 2009), and all 6 had PB1 E618D, which is also in all H1N1pdm09 cases (human and swine).

The first swine isolates with E618D (other than H1N1pdm09) was seen in the first human H3N2v case in the US (A/Kansas/13/2009). All human variant cases in the US since 2009 (19 H3N2v, 1 H1N2v, 1H1N1v) have had PB1 E618D or MP from H1N1pdm09.

None of the recently released swine PB1 2010 isolates have E618D.

The only swine cases with PB1 E618D follow human cases (phylogenetically and in time).

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Latest release of H3N2v swine sequences by USDA

JX008741 Swine 1 H3N2 USA 2010/04/28 2280 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JX008742 Swine 2 H3N2 USA 2010/04/28 2274 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JX008743 Swine 3 H3N2 USA 2010/04/28 2151 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JF312072 Swine 4 H3N2 USA 2010/04/28 1701 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JX008744 Swine 5 H3N2 USA 2010/04/28 1497 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JF312076 Swine 6 H3N2 USA 2010/04/28 1410 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JF312080 Swine 7 H3N2 USA 2010/04/28 982 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JX008745 Swine 8 H3N2 USA 2010/04/28 838 Influenza A virus (A/swine/Illinois/A01057087/2010(H3N2)) c
JX008751 Swine 1 H3N2 USA 2010/12/09 2280 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JX008752 Swine 2 H3N2 USA 2010/12/09 2274 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JX008753 Swine 3 H3N2 USA 2010/12/09 2151 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JN162051 Swine 4 H3N2 USA 2010/12/09 1701 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JX008754 Swine 5 H3N2 USA 2010/12/09 1497 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JN162013 Swine 6 H3N2 USA 2010/12/09 1410 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JN162032 Swine 7 H3N2 USA 2010/12/09 982 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JX008755 Swine 8 H3N2 USA 2010/12/09 838 Influenza A virus (A/swine/Iowa/A01049254/2010(H3N2)) c
JX008736 Swine 1 H3N2 USA 2010/05/24 2280 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JX008737 Swine 2 H3N2 USA 2010/05/24 2274 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JX008738 Swine 3 H3N2 USA 2010/05/24 2151 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JF312071 Swine 4 H3N2 USA 2010/05/24 1701 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JX008739 Swine 5 H3N2 USA 2010/05/24 1497 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JF312075 Swine 6 H3N2 USA 2010/05/24 1410 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JF312079 Swine 7 H3N2 USA 2010/05/24 982 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JX008740 Swine 8 H3N2 USA 2010/05/24 838 Influenza A virus (A/swine/Iowa/A01057188/2010(H3N2)) c
JX008756 Swine 1 H3N2 USA 2010/09/20 2280 Influenza A virus (A/swine/Iowa/A01076311/2010(H3N2)) c
JX008757 Swine 2 H3N2 USA 2010/09/20 2274 Influenza A virus (A/swine/Iowa/A01076311/2010(H3N2)) c
JX008758 Swine 3 H3N2 USA 2010/09/20 2151 Influenza A virus (A/swine/Iowa/A01076311/2010(H3N2)) c
JX008759 Swine 5 H3N2 USA 2010/09/20 1497 Influenza A virus (A/swine/Iowa/A01076311/2010(H3N2)) c
JX008760 Swine 8 H3N2 USA 2010/09/20 838 Influenza A virus (A/swine/Iowa/A01076311/2010(H3N2)) c
JX008761 Swine 1 H3N2 USA 2010/10/04 2280 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX008762 Swine 2 H3N2 USA 2010/10/04 2274 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX008763 Swine 3 H3N2 USA 2010/10/04 2151 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX008764 Swine 5 H3N2 USA 2010/10/04 1497 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX008765 Swine 8 H3N2 USA 2010/10/04 838 Influenza A virus (A/swine/Iowa/A01076507/2010(H3N2)) c
JX008766 Swine 1 H3N2 USA 2010/10/04 2280 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX008767 Swine 2 H3N2 USA 2010/10/04 2274 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX008768 Swine 3 H3N2 USA 2010/10/04 2151 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX008769 Swine 5 H3N2 USA 2010/10/04 1497 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX008770 Swine 8 H3N2 USA 2010/10/04 838 Influenza A virus (A/swine/Iowa/A01076508/2010(H3N2)) c
JX008771 Swine 1 H3N2 USA 2010/10/07 2280 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX008772 Swine 2 H3N2 USA 2010/10/07 2274 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX008773 Swine 3 H3N2 USA 2010/10/07 2151 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX008774 Swine 5 H3N2 USA 2010/10/07 1497 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX008775 Swine 8 H3N2 USA 2010/10/07 838 Influenza A virus (A/swine/Minnesota/A01076531/2010(H3N2)) c
JX008746 Swine 1 H3N2 USA 2010/12/07 2280 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JX008747 Swine 2 H3N2 USA 2010/12/07 2274 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JX008748 Swine 3 H3N2 USA 2010/12/07 2151 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JN162046 Swine 4 H3N2 USA 2010/12/07 1701 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JX008749 Swine 5 H3N2 USA 2010/12/07 1497 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JN162008 Swine 6 H3N2 USA 2010/12/07 1410 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JN162027 Swine 7 H3N2 USA 2010/12/07 982 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2)) c
JX008750 Swine 8 H3N2 USA 2010/12/07 838 Influenza A virus (A/swine/Nebraska/A01049235/2010(H3N2))

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