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niman
PostPosted: Wed Nov 30, 2011 8:09 pm 
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Posts: 27328
Location: Pittsburgh, PA USA
The trH3N2 with the H1N1pdm M gene has created a human contagion, found in all 10 trH3N2 human cases in 2011 leading to a designation of H3N2pdm11. Although this constellation is present in all 10 human cases, only one example has been found in swine which has the same lineages for all 7 gene segments, A/swine/NY/A01104005/2011. 7 other trH3N2 isolates have H1N1pdm09 M gene, but the H3 and N2 sequencs do not match H3N2pdm11. However, the USDA has recently released full sequences for two of these isolates, A/swine/Iowa/A01049035/2010 and A/swine/Iowa/A01049034/2010, and the constellation matches H3N2pdm11.

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niman
PostPosted: Wed Nov 30, 2011 8:33 pm 
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Location: Pittsburgh, PA USA
Top 100 M gene matches

EPI316958 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 979/979 (100%)
EPI316957 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 979/979 (100%)
EPI321140 A/Sydney/DD3-37/2010 (A/H1N1) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI313128 A/Boston/694/2009 (A/H1N1) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI286670 A/Myanmar/JP-S-030/2010 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI273880 A/Mexico/5569/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI257909 A/Hainan-Dingan/SWL136/2010 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI257901 A/Hainan-Dingan/SWL111/2010 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI257473 A/Zhejiang-Nanxun/SWL1600/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI257421 A/Jiangsu-Pingjiang/SWL1567/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI255045 A/New York/7236/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI254765 A/New York/0259/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI246831 A/New York/6668/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI232913 A/New Jersey/09/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI232910 A/Idaho/14/2009 (A/H1N1 pdm09) segment 7 (MP) 1792.4 0.000000e+00 974/976 (99%)
EPI342615 A/West Virginia/11/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI338782 A/canine/Beijing/cau2/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI338780 A/canine/Beijing/cau9/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI336772 A/Philippines/TMC09-197/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI336754 A/swine/Alberta/25/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI333453 A/South Carolina/WRAIR1645P/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI332854 A/Mum/NIV5442/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI332716 A/Phiippines/TMC09-193/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI332715 A/Phiippines/TMC10-99/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI332709 A/Phiippines/TMC09-280/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI332340 A/North Fitzroy/INS476/2010 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI331310 A/PHILIPPINES/3334/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI330327 A/Guangdong-Xinxing/SWL198/2011 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324956 A/Paris/1156/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324953 A/Paris/7976/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324950 A/Paris/7975/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324947 A/Paris/7974/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324944 A/Paris/7973/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324941 A/Paris/7154/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324730 A/Sydney/DD3-27/2010 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324369 A/California/VRDL364/2009 (A/H0) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324357 A/California/VRDL353/2009 (A/H0) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324191 A/swine/MB/25-3/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI324140 A/SW/SK/59-6/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323718 A/England/H093780034/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323714 A/England/H093780041/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323686 A/England/1213/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323682 A/England/H094220579/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323678 A/England/H094240645/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323674 A/England/1116/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323670 A/England/950/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323666 A/England/898/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323662 A/England/902/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323650 A/England/854/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323646 A/England/900/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323642 A/England/859/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323630 A/England/876/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323626 A/England/865/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323622 A/England/857/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323618 A/England/451/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323428 A/England/450/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323427 A/England/446/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323424 A/England/435/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323422 A/England/429/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323421 A/England/424/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323420 A/England/421/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323419 A/England/416/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323418 A/England/415/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323416 A/Ireland/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323415 A/Ireland/3/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323414 A/Ireland/10/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323413 A/Ireland/7/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323412 A/Ireland/2/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323409 A/England/393/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323406 A/England/380/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323403 A/England/366/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323400 A/Scotland/8/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323393 A/England/346/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323391 A/England/343/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323389 A/England/341/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323385 A/Ireland/1/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI323384 A/England/303/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320819 A/Philippines/TMC09_248/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320818 A/Philippines/TMC09_245/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320817 A/Philippines/TMC09_222/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320816 A/Philippines/TMC09_218/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320814 A/Philippines/TMC09_140/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320813 A/Philippines/TMC09_123/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320519 A/Hangzhou/4/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320510 A/Hangzhou/1733/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320509 A/Hangzhou/1732/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320506 A/Hangzhou/1724/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320494 A/Hangzhou/1708/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320493 A/Hangzhou/1693/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320491 A/Hangzhou/157/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320488 A/Hangzhou/156/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320487 A/Hangzhou/15/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320483 A/Hangzhou/129/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320479 A/Hangzhou/124/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320476 A/Hangzhou/117/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320475 A/Hangzhou/115/2010 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320296 A/Australia/17/2009 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320215 A/Lille/7367/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320211 A/Rouen/7208/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)
EPI320207 A/Metz/7105/2009 (A/H1N1 pdm09) segment 7 (MP) 1786.8 0.000000e+00 973/976 (99%)

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niman
PostPosted: Wed Nov 30, 2011 8:37 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27328
Location: Pittsburgh, PA USA
NP matches
EPI337039 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 5 (NP) 2798.8 0.000000e+00 1515/1515 (100%)
EPI337034 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 5 (NP) 2798.8 0.000000e+00 1515/1515 (100%)
EPI340977 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2754.5 0.000000e+00 1507/1515 (99%)
EPI344390 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2752.6 0.000000e+00 1506/1514 (99%)
EPI344383 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2752.6 0.000000e+00 1506/1514 (99%)
EPI312981 A/Pennsylvania/40/2010 (A/H3N2) segment 5 (NP) 2748.9 0.000000e+00 1506/1515 (99%)
EPI293966 A/Minnesota/11/2010 (A/H3N2) segment 5 (NP) 2745.2 0.000000e+00 1505/1515 (99%)
EPI291892 A/Wisconsin/12/2010 (A/H3N2) segment 5 (NP) 2745.2 0.000000e+00 1505/1515 (99%)
EPI342602 A/swine/NY/A01104005/2011 (A/H3N2) segment 5 (NP) 2743.4 0.000000e+00 1505/1515 (99%)
EPI335630 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1504/1515 (99%)
EPI335619 A/Pennsylvania/11/2011 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1504/1515 (99%)
EPI333146 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1504/1515 (99%)
EPI291864 A/Pennsylvania/14/2010 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1504/1515 (99%)
EPI344398 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2736.0 0.000000e+00 1503/1514 (99%)
EPI342689 A/Iowa/08/2011 (A/H3N2) segment 5 (NP) 2732.3 0.000000e+00 1503/1515 (99%)
EPI342681 A/Iowa/07/2011 (A/H3N2) segment 5 (NP) 2732.3 0.000000e+00 1503/1515 (99%)
EPI335611 A/Pennsylvania/09/2011 (A/H3N2) segment 5 (NP) 2732.3 0.000000e+00 1503/1515 (99%)
EPI342697 A/Iowa/09/2011 (A/H3N2) segment 5 (NP) 2715.7 0.000000e+00 1494/1506 (99%)
EPI339164 A/Maine/06/2011 (A/H3N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI244301 A/Kansas/13/2009 (A/H3N2) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
EPI337532 A/swine/Minnesota/001332/2006 (A/H3N2) segment 5 (NP) 2704.6 0.000000e+00 1498/1515 (98%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 2704.6 0.000000e+00 1498/1515 (98%)
EPI337596 A/swine/Illinois/01917/2007 (A/H1N1) segment 5 (NP) 2699.1 0.000000e+00 1497/1515 (98%)
EPI337588 A/swine/Illinois/01918/2007 (A/H1N1) segment 5 (NP) 2699.1 0.000000e+00 1497/1515 (98%)
EPI337412 A/swine/Minnesota/01862/2007 (A/H3N2) segment 5 (NP) 2699.1 0.000000e+00 1497/1515 (98%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 2699.1 0.000000e+00 1497/1515 (98%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 2699.1 0.000000e+00 1497/1515 (98%)
EPI337556 A/swine/Illinois/02251/2008 (A/H1N1) segment 5 (NP) 2693.5 0.000000e+00 1496/1515 (98%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 2688.0 0.000000e+00 1495/1515 (98%)
EPI337436 A/swine/Minnesota/02905/2009 (A/H1N1) segment 5 (NP) 2688.0 0.000000e+00 1496/1516 (98%)
EPI314792 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI302683 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI302682 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI291822 A/Michigan/09/2007 (A/H1N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%)
EPI337580 A/swine/Illinois/02385/2008 (A/H1N1) segment 5 (NP) 2682.5 0.000000e+00 1494/1515 (98%)
EPI302670 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1494/1515 (98%)
EPI337604 A/swine/Illinois/02510/2009 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1493/1515 (98%)
EPI337396 A/swine/Illinois/02064/2008 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1493/1515 (98%)
EPI337372 A/swine/Illinois/02238/2008 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1493/1515 (98%)
EPI302671 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1493/1515 (98%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 2676.9 0.000000e+00 1493/1515 (98%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1492/1515 (98%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1492/1515 (98%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1492/1515 (98%)
EPI337572 A/swine/Illinois/02695/2009 (A/H1N1) segment 5 (NP) 2665.8 0.000000e+00 1491/1515 (98%)
EPI295328 A/swine/South Dakota/152B/2009 (A/H1N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%)
EPI291816 A/Iowa/16/2009 (A/H3N2) segment 5 (NP) 2665.8 0.000000e+00 1491/1515 (98%)
EPI337352 A/swine/Minnesota/01146/2006 (A/H3N2) segment 5 (NP) 2660.3 0.000000e+00 1490/1515 (98%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 2660.3 0.000000e+00 1490/1515 (98%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 2660.3 0.000000e+00 1490/1515 (98%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 2660.3 0.000000e+00 1490/1515 (98%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 2660.3 0.000000e+00 1490/1515 (98%)
EPI337540 A/swine/Minnesota/02475/2008 (A/H1N1) segment 5 (NP) 2654.8 0.000000e+00 1489/1515 (98%)
EPI312650 A/swine/Indiana/240218/2010 (A/H1N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 2654.8 0.000000e+00 1489/1515 (98%)
EPI337365 A/swine/Minnesota/00709/2005 (A/H3N2) segment 5 (NP) 2649.2 0.000000e+00 1488/1515 (98%)
EPI281256 A/swine/Minnesota/02011/2008 (A/H1N2) segment 5 (NP) 2649.2 0.000000e+00 1470/1488 (98%)
EPI281255 A/swine/Missouri/02060/2008 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1471/1492 (98%)
EPI312706 A/swine/North Carolina/239108/2010 (A/H1N2) segment 5 (NP) 2638.1 0.000000e+00 1475/1498 (98%)
EPI281252 A/swine/Nebraska/02013/2008 (A/H1N1) segment 5 (NP) 2634.4 0.000000e+00 1471/1493 (98%)
EPI337524 A/swine/Minnesota/001581/2007 (A/H1N1) segment 5 (NP) 2632.6 0.000000e+00 1485/1515 (98%)
EPI337404 A/swine/Minnesota/02782/2009 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1486/1516 (98%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 2628.9 0.000000e+00 1469/1492 (98%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI291884 A/Texas/14/2008 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI337500 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 5 (NP) 2621.5 0.000000e+00 1483/1515 (97%)
EPI337388 A/swine/Nebraska/00722/2005 (A/H0) segment 5 (NP) 2621.5 0.000000e+00 1483/1515 (97%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI219369 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 5 (NP) 2621.5 0.000000e+00 1483/1515 (97%)
EPI337428 A/swine/Indiana/00427/2004 (A/H1N2) segment 5 (NP) 2616.0 0.000000e+00 1482/1515 (97%)
EPI337336 A/swine/Kentucky/SG1118/2003 (A/H0) segment 5 (NP) 2616.0 0.000000e+00 1482/1515 (97%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 2616.0 0.000000e+00 1470/1497 (98%)
EPI281254 A/swine/North Carolina/02023/2008 (A/H1N1) segment 5 (NP) 2610.4 0.000000e+00 1463/1488 (98%)
EPI219361 A/swine/Kansas/015252/2009 (A/H3N2) segment 5 (NP) 2610.4 0.000000e+00 1481/1515 (97%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI291999 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI291806 A/Iowa/05/2007 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI255755 A/swine/MN/23506/2009 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1481/1516 (97%)
EPI307930 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 5 (NP) 2599.4 0.000000e+00 1468/1498 (97%)
EPI291845 A/Minnesota/10/2009 (A/H1N1) segment 5 (NP) 2599.4 0.000000e+00 1480/1516 (97%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 2599.4 0.000000e+00 1479/1515 (97%)
EPI98714 A/swine/MI/PU243/04 (A/H3N1) segment 5 (NP) 2599.4 0.000000e+00 1479/1515 (97%)
EPI337444 A/swine/Minnesota/00611/2005 (A/H3N2) segment 5 (NP) 2593.8 0.000000e+00 1478/1515 (97%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%)
EPI291829 A/Minnesota/03/2008 (A/H1N1) segment 5 (NP) 2593.8 0.000000e+00 1467/1498 (97%)
EPI103210 A/turkey/Ontario/31232/2005 (A/H3N2) segment 5 (NP) 2593.8 0.000000e+00 1478/1515 (97%)
EPI103192 A/swine/Ontario/33853/2005 (A/H3N2) segment 5 (NP) 2593.8 0.000000e+00 1478/1515 (97%)
EPI103120 A/Ontario/RV1273/2005 (A/H3N2) segment 5 (NP) 2593.8 0.000000e+00 1478/1515 (97%)
EPI15274 A/Swine/Korea/CY02/02 (A/H1N2) segment 5 (NP) 2593.8 0.000000e+00 1478/1515 (97%)
EPI291837 A/Minnesota/09/2010 (A/H3N2) segment 5 (NP) 2592.0 0.000000e+00 1431/1445 (99%)
EPI323206 A/swine/Minnesota/65767/2006 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1477/1515 (97%)
EPI182819 A/swine/Quebec/4001/2005 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1477/1515 (97%)
EPI103174 A/swine/Manitoba/12707/2005 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1477/1515 (97%)
EPI103138 A/swine/Alberta/14722/2005 (A/H3N2) segment 5 (NP) 2588.3 0.000000e+00 1477/1515 (97%)
EPI98730 A/swine/IN/PU542/04 (A/H3N1) segment 5 (NP) 2584.6 0.000000e+00 1476/1515 (97%)
EPI337954 A/swine/Illinois/02450/2008 (A/H0) segment 5 (NP) 2582.7 0.000000e+00 1477/1516 (97%)
EPI314334 A/turkey/BC/1529-3/2005 (A/H3N2) segment 5 (NP) 2582.7 0.000000e+00 1476/1515 (97%)

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Jim
PostPosted: Thu Dec 01, 2011 12:46 am 
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Does this mean that the H3N2pdm11 that we've seen in humans evolved in swine last year and then jumped to humans, or do the data suggest that humans have passed the existing constellation to swine?

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niman
PostPosted: Thu Dec 01, 2011 5:29 am 
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Location: Pittsburgh, PA USA
Jim wrote:
Does this mean that the H3N2pdm11 that we've seen in humans evolved in swine last year and then jumped to humans, or do the data suggest that humans have passed the existing constellation to swine?

This series just shows that even if a swine isolates has picked up the H1N1pmd09 M gene and the H3N2pdm11 NP gene, it still doesn't spread in humans like H3N2pdm11, which is the only version found in humans in 2011. H3N2pdm11 evolved in humans from the dominant version in circulation in 2010.

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niman
PostPosted: Thu Dec 01, 2011 5:33 am 
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HA Matches

EPI316991 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI316990 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1688/1701 (99%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2931.8 0.000000e+00 1663/1701 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2926.2 0.000000e+00 1662/1701 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2926.2 0.000000e+00 1662/1701 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2915.1 0.000000e+00 1660/1701 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2909.6 0.000000e+00 1659/1701 (97%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2904.1 0.000000e+00 1658/1701 (97%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2904.1 0.000000e+00 1658/1701 (97%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2904.1 0.000000e+00 1658/1701 (97%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1656/1701 (97%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1655/1701 (97%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2887.4 0.000000e+00 1656/1702 (97%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2885.6 0.000000e+00 1646/1688 (97%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2881.9 0.000000e+00 1654/1701 (97%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1654/1701 (97%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2870.8 0.000000e+00 1652/1701 (97%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1701 (97%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1701 (97%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1701 (97%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1701 (97%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1652/1702 (97%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1701 (97%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1650/1701 (97%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2857.9 0.000000e+00 1641/1688 (97%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1639/1686 (97%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1648/1701 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1648/1701 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1648/1701 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1647/1701 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1647/1701 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1648/1702 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2839.4 0.000000e+00 1646/1701 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1646/1701 (96%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1646/1702 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1639/1692 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1644/1701 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1645/1702 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1644/1701 (96%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1641/1701 (96%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1642/1702 (96%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1641/1702 (96%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1640/1702 (96%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2789.6 0.000000e+00 1637/1700 (96%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1637/1701 (96%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1638/1702 (96%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1637/1702 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2778.5 0.000000e+00 1636/1701 (96%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1635/1701 (96%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1701 (96%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1635/1702 (96%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1634/1701 (96%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2761.9 0.000000e+00 1634/1703 (95%)
EPI342603 A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1626/1692 (96%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1632/1701 (95%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1631/1701 (95%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 2750.8 0.000000e+00 1630/1701 (95%)
EPI342704 A/Iowa/09/2011 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1631/1702 (95%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1630/1701 (95%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1630/1701 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1630/1701 (95%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1631/1702 (95%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1630/1701 (95%)
EPI219368 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1630/1701 (95%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1633/1704 (95%)
EPI342696 A/Iowa/08/2011 (A/H3N2) segment 4 (HA) 2745.2 0.000000e+00 1630/1702 (95%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 2745.2 0.000000e+00 1631/1703 (95%)
EPI318101 A/swine/Iowa/A01049160/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1630/1702 (95%)
EPI317007 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1629/1701 (95%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1629/1701 (95%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1632/1704 (95%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 2741.5 0.000000e+00 1612/1676 (96%)
EPI344389 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI340984 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI307945 A/swine/Illinois/A01057088/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1629/1702 (95%)
EPI344397 A/Indiana/10/2011 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1627/1701 (95%)

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niman
PostPosted: Thu Dec 01, 2011 5:36 am 
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Posts: 27328
Location: Pittsburgh, PA USA
EPI317014 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI317013 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI312691 A/swine/Minnesota/239105/2009 (A/H3N2) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI103158 A/swine/British Columbia/28103/2005 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1375/1409 (97%)
EPI337547 A/swine/Minnesota/00484/2005 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI337443 A/swine/Minnesota/00611/2005 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1375/1410 (97%)
EPI182818 A/swine/Quebec/4001/2005 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1374/1410 (97%)
EPI337386 A/swine/Nebraska/00722/2005 (A/H0) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI337351 A/swine/Minnesota/01146/2006 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI314333 A/turkey/BC/1529-3/2005 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1374/1411 (97%)
EPI229374 A/turkey/OH/313053/2004 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI103194 A/swine/Ontario/33853/2005 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI103122 A/Ontario/RV1273/2005 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI101393 A/turkey/Ohio/313053/04 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1373/1410 (97%)
EPI103212 A/turkey/Ontario/31232/2005 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1371/1409 (97%)
EPI337952 A/swine/Illinois/02450/2008 (A/H0) segment 6 (NA) 2383.3 0.000000e+00 1370/1410 (97%)
EPI182825 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 6 (NA) 2383.3 0.000000e+00 1372/1412 (97%)
EPI235273 A/swine/North Carolina/2003 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI228924 A/turkey/Illinois/2004 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI227576 A/turkey/NC/353568/2005 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI103176 A/swine/Manitoba/12707/2005 (A/H3N2) segment 6 (NA) 2372.2 0.000000e+00 1368/1410 (97%)
EPI337343 A/swine/Iowa/01700/2007 (A/H3N2) segment 6 (NA) 2366.7 0.000000e+00 1367/1410 (96%)
EPI158878 A/turkey/MN/366767/2005 (A/H3N2) segment 6 (NA) 2366.7 0.000000e+00 1367/1410 (96%)
EPI103140 A/swine/Alberta/14722/2005 (A/H3N2) segment 6 (NA) 2366.7 0.000000e+00 1367/1410 (96%)
EPI337364 A/swine/Minnesota/00709/2005 (A/H3N2) segment 6 (NA) 2361.1 0.000000e+00 1367/1411 (96%)
EPI222653 A/swine/Minnesota/1145/2007 (A/H3N2) segment 6 (NA) 2361.1 0.000000e+00 1366/1410 (96%)
EPI168647 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 6 (NA) 2361.1 0.000000e+00 1366/1410 (96%)
EPI128349 A/Ontario/1252/2007 (A/H3N2) segment 6 (NA) 2361.1 0.000000e+00 1366/1410 (96%)
EPI168652 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 6 (NA) 2355.6 0.000000e+00 1365/1410 (96%)
EPI318490 A/South Carolina/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1364/1410 (96%)
EPI225757 A/swine/Minnesota/66960/2006 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1365/1411 (96%)
EPI225755 A/swine/Minnesota/66853/2006 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1364/1410 (96%)
EPI222962 A/swine/Minnesota/761/2007 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1364/1410 (96%)
EPI222956 A/swine/Minnesota/1300/2007 (A/H3N2) segment 6 (NA) 2350.1 0.000000e+00 1364/1410 (96%)
EPI337531 A/swine/Minnesota/001332/2006 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI320551 A/Illinois/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234920 A/Texas/78/2003 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234912 A/Texas/152/2003 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234908 A/Texas/133/2003 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234907 A/Texas/132/2003 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234836 A/New York/1/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234813 A/Nebraska/18/2003 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI228953 A/Illinois/03/2004 (A/H0N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI225752 A/swine/Minnesota/65767/2006 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI139366 A/Denmark/04/2004 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI93257 A/Canterbury/443/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI93200 A/Canterbury/440/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI93048 A/Canterbury/431/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI92497 A/Canterbury/386/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI81672 A/Oklahoma/323/03 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI79659 A/New York/272/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI53579 A/New York/37/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI53035 A/New York/51/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI52648 A/New York/13/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI28707 A/New York/479/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI27287 A/New York/43/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI27230 A/New York/40/2003 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI26964 A/New York/33/2004 (A/H3N2) segment 6 (NA) 2344.5 0.000000e+00 1363/1410 (96%)
EPI234914 A/Texas/29/2003 (A/H0N2) segment 6 (NA) 2340.8 0.000000e+00 1362/1410 (96%)
EPI320559 A/Illinois/NHRC0001/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI320311 A/Australia/NHRC0005/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI320283 A/Missouri/NHRC0002/2004 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI319158 A/Denmark/11/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI319018 A/California/NHRC0006/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318858 A/Australia/NHRC0002/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318850 A/Australia/NHRC0003/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318842 A/Australia/NHRC0006/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318834 A/Australia/NHRC0008/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318826 A/Australia/NHRC0009/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318762 A/Australia/NHRC0010/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318746 A/Australia/NHRC0004/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318738 A/Australia/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318522 A/Texas/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI318498 A/Missouri/NHRC0001/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI242140 A/X-141(Puerto Rico/8/1934-Panama/2007/1999) (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234918 A/Texas/41/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234917 A/Texas/40e/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234910 A/Texas/141e/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234909 A/Texas/140e/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234896 A/South Dakota/19/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234869 A/Oklahoma/8/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI234868 A/Oklahoma/7/2003 (A/H0N2) segment 6 (NA) 2339.0 0.000000e+00 1363/1411 (96%)
EPI222676 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139315 A/Denmark/4/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139311 A/Denmark/26/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI139304 A/Denmark/01/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI96281 A/Canterbury/425/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI94587 A/Canterbury/409/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI94511 A/Canterbury/102/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI94378 A/Canterbury/56/2002 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93238 A/Canterbury/442/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93219 A/Canterbury/441/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93181 A/Canterbury/439/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93105 A/Canterbury/435/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93086 A/Canterbury/434/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93067 A/South Canterbury/433/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93029 A/Canterbury/430/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI93010 A/Canterbury/428/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI92953 A/Canterbury/423/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)
EPI92934 A/Canterbury/420/2003 (A/H3N2) segment 6 (NA) 2339.0 0.000000e+00 1362/1410 (96%)

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niman
PostPosted: Thu Dec 01, 2011 5:42 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27328
Location: Pittsburgh, PA USA
EPI337036 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI337031 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%)
EPI312686 A/swine/Minnesota/239105/2009 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3923.4 0.000000e+00 2230/2282 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3904.9 0.000000e+00 2224/2279 (97%)
EPI337369 A/swine/Minnesota/00709/2005 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI128360 A/Ontario/1252/2007 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3871.7 0.000000e+00 2218/2279 (97%)
EPI291833 A/Minnesota/03/2008 (A/H1N1) segment 1 (PB2) 3871.7 0.000000e+00 2217/2277 (97%)
EPI337520 A/swine/Minnesota/001444/2007 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI281299 A/swine/Iowa/02096/2008 (A/H1N1) segment 1 (PB2) 3868.0 0.000000e+00 2216/2277 (97%)
EPI182830 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%)
EPI323205 A/swine/Minnesota/65767/2006 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2218/2280 (97%)
EPI337472 A/swine/Minnesota/01358/2006 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3856.9 0.000000e+00 2198/2253 (97%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI337382 A/swine/Minnesota/001200/2006 (A/H1N1) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI314698 A/swine/QC/440-A/2009 (A/H3N2) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%)
EPI324161 A/SW/MB/5-5/2009 (A/H1N1) segment 1 (PB2) 3849.5 0.000000e+00 2214/2279 (97%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3849.5 0.000000e+00 2214/2279 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3849.5 0.000000e+00 2200/2258 (97%)
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 3845.8 0.000000e+00 2197/2254 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3842.2 0.000000e+00 2194/2251 (97%)
EPI337424 A/swine/Minnesota/02053/2008 (A/H1N1) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%)
EPI314646 A/swine/QC/382/2009 (A/H3N2) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%)
EPI153512 A/swine/Ohio/75004/04 (A/H1N1) segment 1 (PB2) 3838.5 0.000000e+00 2212/2279 (97%)
EPI166256 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 1 (PB2) 3836.6 0.000000e+00 2193/2251 (97%)
EPI166272 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2194/2253 (97%)
EPI166269 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 1 (PB2) 3834.8 0.000000e+00 2194/2253 (97%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3832.9 0.000000e+00 2212/2280 (97%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%)
EPI323975 A/swine/QC/398/2009 (A/H1N1) segment 1 (PB2) 3827.4 0.000000e+00 2211/2280 (96%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 3827.4 0.000000e+00 2207/2275 (97%)
EPI324093 A/swine/QC/3399-6/2009 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI324040 A/swine/QC/1697-1/2009 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%)
EPI292059 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3818.1 0.000000e+00 2207/2277 (96%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI166259 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 1 (PB2) 3818.1 0.000000e+00 2191/2253 (97%)
EPI98722 A/swine/IN/PU542/04 (A/H3N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI9469 A/Swine/Illinois/100085A/01 (A/H1N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2202/2271 (96%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2202/2271 (96%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2204/2274 (96%)
EPI281305 A/swine/Minnesota/02093/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2207/2278 (96%)
EPI281298 A/swine/Texas/01976/2008 (A/H1N2) segment 1 (PB2) 3812.6 0.000000e+00 2206/2277 (96%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2207/2280 (96%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%)
EPI291888 A/Texas/14/2008 (A/H1N1) segment 1 (PB2) 3810.8 0.000000e+00 2204/2274 (96%)
EPI337480 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337400 A/swine/Illinois/02064/2008 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337362 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI255759 A/swine/MN/48683/2002 (A/H1N1) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)
EPI246072 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI246064 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI246056 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%)

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niman
PostPosted: Thu Dec 01, 2011 5:44 am 
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Posts: 27328
Location: Pittsburgh, PA USA
EPI337037 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 2 (PB1) 4205.9 0.000000e+00 2277/2277 (100%)
EPI337032 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2276/2277 (99%)
EPI312687 A/swine/Minnesota/239105/2009 (A/H3N2) segment 2 (PB1) 4100.7 0.000000e+00 2259/2278 (99%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3951.1 0.000000e+00 2228/2272 (98%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2230/2278 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2226/2272 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2225/2272 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2225/2272 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3930.8 0.000000e+00 2224/2272 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3928.9 0.000000e+00 2228/2278 (97%)
EPI166273 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 2 (PB1) 3919.7 0.000000e+00 2213/2258 (98%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2225/2277 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2226/2278 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2225/2278 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2221/2272 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2224/2278 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3906.8 0.000000e+00 2223/2277 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3906.8 0.000000e+00 2221/2273 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3906.8 0.000000e+00 2225/2279 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2223/2278 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2223/2278 (97%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2219/2272 (97%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2216/2272 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2220/2278 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2220/2278 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2217/2273 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3880.9 0.000000e+00 2219/2278 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3880.9 0.000000e+00 2212/2267 (97%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2220/2279 (97%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2215/2272 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2219/2278 (97%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2216/2273 (97%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3879.1 0.000000e+00 2219/2278 (97%)
EPI291848 A/Minnesota/10/2009 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2219/2279 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2214/2272 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2218/2278 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3873.5 0.000000e+00 2218/2278 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2217/2278 (97%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2216/2276 (97%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2213/2272 (97%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3868.0 0.000000e+00 2218/2279 (97%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3868.0 0.000000e+00 2217/2278 (97%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2216/2278 (97%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2213/2273 (97%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3862.5 0.000000e+00 2216/2278 (97%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3862.5 0.000000e+00 2217/2279 (97%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 3858.8 0.000000e+00 2207/2266 (97%)
EPI314689 A/swine/QC/1840-2/2009 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2273 (97%)
EPI255752 A/swine/MN/23506/2009 (A/H1N1) segment 2 (PB1) 3856.9 0.000000e+00 2213/2274 (97%)
EPI246073 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 2 (PB1) 3856.9 0.000000e+00 2215/2278 (97%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3856.9 0.000000e+00 2216/2279 (97%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3856.9 0.000000e+00 2215/2278 (97%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 3855.1 0.000000e+00 2207/2266 (97%)
EPI337423 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3851.4 0.000000e+00 2214/2278 (97%)
EPI324151 A/SW/SK/11-16/2009 (A/H1N1) segment 2 (PB1) 3851.4 0.000000e+00 2210/2272 (97%)
EPI246065 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 2 (PB1) 3851.4 0.000000e+00 2214/2278 (97%)
EPI246057 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 2 (PB1) 3847.7 0.000000e+00 2213/2278 (97%)
EPI291809 A/Iowa/05/2007 (A/H1N1) segment 2 (PB1) 3845.8 0.000000e+00 2209/2272 (97%)
EPI337340 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3840.3 0.000000e+00 2212/2278 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2212/2278 (97%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3840.3 0.000000e+00 2213/2279 (97%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3840.3 0.000000e+00 2213/2279 (97%)
EPI128358 A/Ontario/1252/2007 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2208/2272 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3840.3 0.000000e+00 2208/2272 (97%)
EPI337407 A/swine/Minnesota/02782/2009 (A/H3N2) segment 2 (PB1) 3834.8 0.000000e+00 2211/2278 (97%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3834.8 0.000000e+00 2208/2273 (97%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3834.8 0.000000e+00 2208/2273 (97%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3834.8 0.000000e+00 2208/2273 (97%)
EPI292039 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 2 (PB1) 3831.1 0.000000e+00 2208/2274 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2206/2272 (97%)
EPI281297 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2206/2272 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2210/2278 (97%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 3823.7 0.000000e+00 2205/2272 (97%)
EPI314645 A/swine/QC/382/2009 (A/H3N2) segment 2 (PB1) 3823.7 0.000000e+00 2206/2273 (97%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3823.7 0.000000e+00 2206/2273 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3823.7 0.000000e+00 2209/2278 (96%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3818.1 0.000000e+00 2210/2280 (96%)
EPI324162 A/SW/MB/5-5/2009 (A/H1N1) segment 2 (PB1) 3818.1 0.000000e+00 2204/2272 (97%)
EPI314672 A/swine/QC/1698-1/2009 (A/H3N2) segment 2 (PB1) 3818.1 0.000000e+00 2205/2273 (97%)
EPI291879 A/South Dakota/03/2008 (A/H1N1) segment 2 (PB1) 3818.1 0.000000e+00 2209/2279 (96%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3818.1 0.000000e+00 2205/2273 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3818.1 0.000000e+00 2208/2278 (96%)
EPI324094 A/swine/QC/3399-6/2009 (A/H1N1) segment 2 (PB1) 3814.5 0.000000e+00 2208/2279 (96%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3812.6 0.000000e+00 2209/2280 (96%)
EPI281289 A/swine/North Carolina/02084/2008 (A/H1N1) segment 2 (PB1) 3812.6 0.000000e+00 2203/2272 (96%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 3812.6 0.000000e+00 2204/2273 (96%)
EPI177843 A/swine/Minnesota/2728/2007 (A/H1N2) segment 2 (PB1) 3812.6 0.000000e+00 2206/2277 (96%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 3810.8 0.000000e+00 2194/2259 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 3807.1 0.000000e+00 2208/2280 (96%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 3807.1 0.000000e+00 2208/2280 (96%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)
EPI314697 A/swine/QC/440-A/2009 (A/H3N2) segment 2 (PB1) 3807.1 0.000000e+00 2203/2273 (96%)
EPI314681 A/swine/QC/414/2009 (A/H3N2) segment 2 (PB1) 3807.1 0.000000e+00 2202/2272 (96%)
EPI291818 A/Iowa/16/2009 (A/H3N2) segment 2 (PB1) 3807.1 0.000000e+00 2206/2278 (96%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3807.1 0.000000e+00 2203/2273 (96%)
EPI220897 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)
EPI220857 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)
EPI220849 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)
EPI220841 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)
EPI220833 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 2 (PB1) 3807.1 0.000000e+00 2207/2279 (96%)

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niman
PostPosted: Thu Dec 01, 2011 5:49 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27328
Location: Pittsburgh, PA USA
EPI337038 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI337033 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3757.2 0.000000e+00 2112/2151 (98%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%)
EPI103169 A/swine/Manitoba/12707/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI222651 A/swine/Minnesota/1145/2007 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%)
EPI337550 A/swine/Minnesota/00484/2005 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%)
EPI323281 A/swine/Minnesota/7931/2007 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI182828 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%)
EPI222673 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%)
EPI337390 A/swine/Nebraska/00722/2005 (A/H0) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2102/2152 (97%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%)
EPI281275 A/swine/Iowa/02096/2008 (A/H1N1) segment 3 (PA) 3690.7 0.000000e+00 2098/2148 (97%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%)
EPI337470 A/swine/Minnesota/01358/2006 (A/H1N1) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%)
EPI323253 A/swine/Minnesota/65767/2006 (A/H3N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%)
EPI337414 A/swine/Minnesota/01862/2007 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI128356 A/Ontario/1252/2007 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI179353 A/swine/IL/07003243/2007 (A/H1N2) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%)
EPI337462 A/swine//Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%)
EPI323199 A/swine/Minnesota/5947/2007 (A/H3N2) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%)
EPI222681 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%)
EPI166277 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 3 (PA) 3651.9 0.000000e+00 2072/2119 (97%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3648.3 0.000000e+00 2079/2131 (97%)
EPI314516 A/quail/QC/FAV-10/2008 (A/H3N2) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%)
EPI166254 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 3 (PA) 3642.7 0.000000e+00 2076/2128 (97%)
EPI337606 A/swine/Illinois/02510/2009 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI337582 A/swine/Illinois/02385/2008 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI337422 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3640.9 0.000000e+00 2093/2153 (97%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
EPI324034 A/swine/QC/1695-3/2009 (A/H1N1) segment 3 (PA) 3637.2 0.000000e+00 2091/2152 (97%)
EPI337598 A/swine/Illinois/01917/2007 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI337558 A/swine/Illinois/02251/2008 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI337526 A/swine/Minnesota/001581/2007 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI324163 A/SW/MB/5-5/2009 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI291817 A/Iowa/16/2009 (A/H3N2) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI281285 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3635.3 0.000000e+00 2088/2148 (97%)
EPI246074 A/Saskatchewan/5351/2009 (A/H1N1 seasonal) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI246066 A/Saskatchewan/5350/2009 (A/H1N1 seasonal) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI220874 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI220834 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI220794 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI220786 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
EPI220778 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%)
EPI166257 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 3 (PA) 3631.6 0.000000e+00 2070/2122 (97%)
EPI337406 A/swine/Minnesota/02782/2009 (A/H3N2) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%)
EPI337338 A/swine/Kentucky/SG1118/2003 (A/H0) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%)
EPI324152 A/SW/SK/11-16/2009 (A/H1N1) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%)
EPI323994 A/swine/QC/1488-2/2009 (A/H1N1) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%)
EPI281281 A/swine/Minnesota/02093/2008 (A/H1N1) segment 3 (PA) 3629.8 0.000000e+00 2088/2149 (97%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3629.8 0.000000e+00 2087/2148 (97%)
EPI246058 A/Saskatchewan/5131/2009 (A/H1N1 seasonal) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%)
EPI220850 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%)
EPI220826 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%)
EPI220802 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%)
EPI337574 A/swine/Illinois/02695/2009 (A/H1N1) segment 3 (PA) 3624.2 0.000000e+00 2088/2151 (97%)
EPI323977 A/swine/QC/398/2009 (A/H1N1) segment 3 (PA) 3624.2 0.000000e+00 2088/2151 (97%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%)
EPI220923 A/swine/Texas/050593/2008 (A/H1N2) segment 3 (PA) 3624.2 0.000000e+00 2090/2153 (97%)
EPI220882 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%)
EPI220842 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%)
EPI220818 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%)
EPI220810 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3624.2 0.000000e+00 2074/2130 (97%)
EPI314644 A/swine/QC/382/2009 (A/H3N2) segment 3 (PA) 3620.6 0.000000e+00 2088/2152 (97%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3618.7 0.000000e+00 2089/2153 (97%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3618.7 0.000000e+00 2089/2153 (97%)

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