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 Post subject: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 6:52 pm 
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Location: Pittsburgh, PA USA
CDC note on GISAID sequences for A/Maine/09/2011

Human case of SOIV H3N2 with M gene from H1N1pdm09

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 6:58 pm 
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Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
CDC note on GISAID sequences for A/Maine/09/2011

Human case of SOIV H3N2 with M gene from H1N1pdm09

8M collected on October 10,2011

http://bit.ly/nr7hV7

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:16 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top HA matches

EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 2876.4 0.000000e+00 1557/1557 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1554/1557 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 2848.7 0.000000e+00 1552/1557 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1551/1557 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 2839.4 0.000000e+00 1550/1557 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1550/1557 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1550/1557 (99%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2837.6 0.000000e+00 1550/1557 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1549/1557 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1549/1557 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 2832.0 0.000000e+00 1549/1557 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1548/1557 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1546/1557 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 2811.7 0.000000e+00 1545/1557 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 2758.2 0.000000e+00 1519/1532 (99%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2649.2 0.000000e+00 1518/1559 (97%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2638.1 0.000000e+00 1515/1558 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2621.5 0.000000e+00 1513/1559 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2621.5 0.000000e+00 1513/1559 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2621.5 0.000000e+00 1513/1559 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2621.5 0.000000e+00 1513/1559 (97%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2616.0 0.000000e+00 1512/1559 (96%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2610.4 0.000000e+00 1510/1558 (96%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2610.4 0.000000e+00 1510/1558 (96%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2604.9 0.000000e+00 1510/1559 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2599.4 0.000000e+00 1509/1559 (96%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2599.4 0.000000e+00 1509/1559 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2593.8 0.000000e+00 1508/1559 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2588.3 0.000000e+00 1508/1560 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2582.7 0.000000e+00 1507/1560 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2582.7 0.000000e+00 1506/1559 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2577.2 0.000000e+00 1506/1560 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2577.2 0.000000e+00 1505/1559 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2577.2 0.000000e+00 1505/1559 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2577.2 0.000000e+00 1505/1559 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2566.1 0.000000e+00 1503/1559 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2564.3 0.000000e+00 1499/1553 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2564.3 0.000000e+00 1495/1547 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1503/1560 (96%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1503/1560 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1502/1559 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1502/1559 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1502/1559 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2560.6 0.000000e+00 1502/1559 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2556.9 0.000000e+00 1500/1558 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2555.0 0.000000e+00 1500/1558 (96%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2551.3 0.000000e+00 1492/1546 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2549.5 0.000000e+00 1502/1561 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2549.5 0.000000e+00 1499/1558 (96%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2549.5 0.000000e+00 1502/1561 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2544.0 0.000000e+00 1499/1559 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2544.0 0.000000e+00 1500/1560 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2544.0 0.000000e+00 1499/1559 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2538.4 0.000000e+00 1498/1559 (96%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2532.9 0.000000e+00 1497/1559 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2532.9 0.000000e+00 1491/1550 (96%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2527.3 0.000000e+00 1494/1557 (95%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1496/1560 (95%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1496/1560 (95%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1495/1559 (95%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1494/1558 (95%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1494/1558 (95%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1496/1560 (95%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2521.8 0.000000e+00 1496/1560 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2516.3 0.000000e+00 1495/1560 (95%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 2516.3 0.000000e+00 1495/1560 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2516.3 0.000000e+00 1495/1560 (95%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1493/1559 (95%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1494/1560 (95%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1494/1560 (95%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1492/1558 (95%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1492/1558 (95%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2510.7 0.000000e+00 1492/1558 (95%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1493/1560 (95%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1491/1558 (95%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1492/1559 (95%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1493/1560 (95%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1493/1560 (95%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2505.2 0.000000e+00 1492/1559 (95%)
EPI316991 A/swine/Iowa/A0109035/2010 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1489/1557 (95%)
EPI316990 A/swine/Iowa/A0109034/2010 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1489/1557 (95%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1490/1558 (95%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1492/1560 (95%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1492/1560 (95%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2499.6 0.000000e+00 1492/1560 (95%)
EPI338543 A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 4 (HA) 2494.1 0.000000e+00 1490/1559 (95%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2494.1 0.000000e+00 1491/1560 (95%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2488.6 0.000000e+00 1490/1560 (95%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2483.0 0.000000e+00 1488/1559 (95%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2483.0 0.000000e+00 1489/1560 (95%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2483.0 0.000000e+00 1488/1559 (95%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2483.0 0.000000e+00 1489/1560 (95%)
EPI335253 A/swine/Quebec/1267568/2010 (A/H3N2) segment 4 (HA) 2477.5 0.000000e+00 1488/1560 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2477.5 0.000000e+00 1487/1559 (95%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2471.9 0.000000e+00 1486/1559 (95%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2471.9 0.000000e+00 1488/1561 (95%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2466.4 0.000000e+00 1487/1561 (95%)
EPI219368 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 4 (HA) 2466.4 0.000000e+00 1485/1559 (95%)
EPI324852 A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 4 (HA) 2460.9 0.000000e+00 1486/1561 (95%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2457.2 0.000000e+00 1485/1561 (95%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:22 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top NA matches

EPI339170 A/Maine/06/2011 (A/H3N2) segment 6 (NA) 2564.3 0.000000e+00 1388/1388 (100%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2510.7 0.000000e+00 1378/1388 (99%)
EPI317022 A/swine/Iowa/A0109071/2010 (A/H1N2) segment 6 (NA) 2508.9 0.000000e+00 1378/1388 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2508.9 0.000000e+00 1378/1388 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2508.9 0.000000e+00 1378/1388 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%)
EPI335612 A/Pennsylvania/09/2011 (A/H3N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1372/1385 (99%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1375/1389 (98%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2470.1 0.000000e+00 1371/1388 (98%)
EPI338566 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 6 (NA) 2470.1 0.000000e+00 1371/1388 (98%)
EPI338565 A/swine/Illinois/A01049968/2011 (A/H1N2) segment 6 (NA) 2470.1 0.000000e+00 1371/1388 (98%)
EPI338564 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 6 (NA) 2470.1 0.000000e+00 1371/1388 (98%)
EPI338585 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 6 (NA) 2464.6 0.000000e+00 1368/1385 (98%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2425.8 0.000000e+00 1363/1388 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1362/1388 (98%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2414.7 0.000000e+00 1361/1388 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2414.7 0.000000e+00 1361/1388 (98%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2409.2 0.000000e+00 1360/1388 (97%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2409.2 0.000000e+00 1360/1388 (97%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2409.2 0.000000e+00 1360/1388 (97%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2409.2 0.000000e+00 1361/1389 (97%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2409.2 0.000000e+00 1360/1388 (97%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1359/1388 (97%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1359/1388 (97%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1359/1388 (97%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1359/1388 (97%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2392.5 0.000000e+00 1358/1389 (97%)
EPI312699 A/swine/Minnesota/239106/2010 (A/H1N2) segment 6 (NA) 2375.9 0.000000e+00 1354/1388 (97%)
EPI220901 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 6 (NA) 2370.4 0.000000e+00 1353/1388 (97%)
EPI219362 A/swine/Kansas/015252/2009 (A/H3N2) segment 6 (NA) 2364.8 0.000000e+00 1352/1388 (97%)
EPI219370 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 6 (NA) 2359.3 0.000000e+00 1351/1388 (97%)
EPI315843 A/swine/South Dakota/5/2011 (A/H1N2) segment 6 (NA) 2337.1 0.000000e+00 1347/1388 (97%)
EPI315846 A/swine/South Dakota/6/2011 (A/H1N2) segment 6 (NA) 2326.1 0.000000e+00 1345/1388 (96%)
EPI338576 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 6 (NA) 2316.8 0.000000e+00 1343/1388 (96%)
EPI337507 A/swine/Minnesota/02324/2008 (A/H1N2) segment 6 (NA) 2309.4 0.000000e+00 1342/1388 (96%)
EPI292291 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 6 (NA) 2303.9 0.000000e+00 1342/1389 (96%)
EPI337475 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 6 (NA) 2292.8 0.000000e+00 1339/1388 (96%)
EPI229374 A/turkey/OH/313053/2004 (A/H3N2) segment 6 (NA) 2287.3 0.000000e+00 1338/1388 (96%)
EPI101393 A/turkey/Ohio/313053/04 (A/H3N2) segment 6 (NA) 2287.3 0.000000e+00 1338/1388 (96%)
EPI337343 A/swine/Iowa/01700/2007 (A/H3N2) segment 6 (NA) 2276.2 0.000000e+00 1336/1388 (96%)
EPI235273 A/swine/North Carolina/2003 (A/H3N2) segment 6 (NA) 2270.7 0.000000e+00 1336/1389 (96%)
EPI228924 A/turkey/Illinois/2004 (A/H3N2) segment 6 (NA) 2270.7 0.000000e+00 1336/1389 (96%)
EPI227576 A/turkey/NC/353568/2005 (A/H3N2) segment 6 (NA) 2270.7 0.000000e+00 1336/1389 (96%)
EPI103158 A/swine/British Columbia/28103/2005 (A/H3N2) segment 6 (NA) 2270.7 0.000000e+00 1335/1388 (96%)
EPI337547 A/swine/Minnesota/00484/2005 (A/H3N2) segment 6 (NA) 2265.1 0.000000e+00 1334/1388 (96%)
EPI337443 A/swine/Minnesota/00611/2005 (A/H3N2) segment 6 (NA) 2265.1 0.000000e+00 1334/1388 (96%)
EPI337386 A/swine/Nebraska/00722/2005 (A/H0) segment 6 (NA) 2265.1 0.000000e+00 1334/1388 (96%)
EPI337952 A/swine/Illinois/02450/2008 (A/H0) segment 6 (NA) 2259.6 0.000000e+00 1333/1388 (96%)
EPI182818 A/swine/Quebec/4001/2005 (A/H3N2) segment 6 (NA) 2259.6 0.000000e+00 1333/1388 (96%)
EPI314333 A/turkey/BC/1529-3/2005 (A/H3N2) segment 6 (NA) 2254.0 0.000000e+00 1333/1389 (95%)
EPI168652 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 6 (NA) 2254.0 0.000000e+00 1333/1389 (95%)
EPI103194 A/swine/Ontario/33853/2005 (A/H3N2) segment 6 (NA) 2254.0 0.000000e+00 1332/1388 (95%)
EPI103176 A/swine/Manitoba/12707/2005 (A/H3N2) segment 6 (NA) 2254.0 0.000000e+00 1332/1388 (95%)
EPI103122 A/Ontario/RV1273/2005 (A/H3N2) segment 6 (NA) 2254.0 0.000000e+00 1332/1388 (95%)
EPI337364 A/swine/Minnesota/00709/2005 (A/H3N2) segment 6 (NA) 2248.5 0.000000e+00 1331/1388 (95%)
EPI103212 A/turkey/Ontario/31232/2005 (A/H3N2) segment 6 (NA) 2248.5 0.000000e+00 1332/1389 (95%)
EPI234591 A/swine/SD/31813/2009 (A/H1N2) segment 6 (NA) 2243.0 0.000000e+00 1330/1388 (95%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:27 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top PB2 matches

EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 4181.9 0.000000e+00 2264/2264 (100%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 4132.1 0.000000e+00 2255/2264 (99%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 4132.1 0.000000e+00 2255/2264 (99%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 4132.1 0.000000e+00 2255/2264 (99%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 4124.7 0.000000e+00 2249/2257 (99%)
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 4102.5 0.000000e+00 2249/2263 (99%)
EPI312977 A/Pennsylvania/40/2010 (A/H3N2) segment 1 (PB2) 4093.3 0.000000e+00 2248/2264 (99%)
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 4091.4 0.000000e+00 2247/2263 (99%)
EPI314788 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 1 (PB2) 4082.2 0.000000e+00 2246/2264 (99%)
EPI293962 A/Minnesota/11/2010 (A/H3N2) segment 1 (PB2) 4078.5 0.000000e+00 2246/2265 (99%)
EPI333194 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 4026.8 0.000000e+00 2236/2264 (98%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 4026.8 0.000000e+00 2236/2264 (98%)
EPI335607 A/Pennsylvania/09/2011 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 4021.3 0.000000e+00 2235/2264 (98%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 4021.3 0.000000e+00 2235/2264 (98%)
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 4021.3 0.000000e+00 2235/2264 (98%)
EPI335626 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4015.7 0.000000e+00 2228/2255 (98%)
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 4006.5 0.000000e+00 2223/2250 (98%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 4001.0 0.000000e+00 2231/2264 (98%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3999.1 0.000000e+00 2231/2264 (98%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3999.1 0.000000e+00 2231/2264 (98%)
EPI337408 A/swine/Minnesota/02782/2009 (A/H3N2) segment 1 (PB2) 3993.6 0.000000e+00 2230/2264 (98%)
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3988.0 0.000000e+00 2229/2264 (98%)
EPI307926 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 1 (PB2) 3982.5 0.000000e+00 2228/2264 (98%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3971.4 0.000000e+00 2226/2264 (98%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3971.4 0.000000e+00 2227/2265 (98%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3960.3 0.000000e+00 2224/2264 (98%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3960.3 0.000000e+00 2224/2264 (98%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3954.8 0.000000e+00 2223/2264 (98%)
EPI295332 A/swine/South Dakota/152B/2009 (A/H1N2) segment 1 (PB2) 3949.3 0.000000e+00 2222/2264 (98%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3943.7 0.000000e+00 2221/2264 (98%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3943.7 0.000000e+00 2221/2264 (98%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3932.6 0.000000e+00 2219/2264 (98%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3927.1 0.000000e+00 2218/2264 (97%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3927.1 0.000000e+00 2218/2264 (97%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3927.1 0.000000e+00 2218/2264 (97%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3927.1 0.000000e+00 2218/2264 (97%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3921.6 0.000000e+00 2217/2264 (97%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3916.0 0.000000e+00 2216/2264 (97%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3916.0 0.000000e+00 2216/2264 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3916.0 0.000000e+00 2216/2264 (97%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3916.0 0.000000e+00 2216/2264 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3916.0 0.000000e+00 2216/2264 (97%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3910.5 0.000000e+00 2214/2264 (97%)
EPI337608 A/swine/Illinois/02510/2009 (A/H1N1) segment 1 (PB2) 3904.9 0.000000e+00 2214/2264 (97%)
EPI337576 A/swine/Illinois/02695/2009 (A/H1N1) segment 1 (PB2) 3904.9 0.000000e+00 2214/2264 (97%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3904.9 0.000000e+00 2214/2264 (97%)
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 3904.9 0.000000e+00 2214/2264 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3904.9 0.000000e+00 2214/2264 (97%)
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2213/2263 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3893.9 0.000000e+00 2212/2264 (97%)
EPI337584 A/swine/Illinois/02385/2008 (A/H1N1) segment 1 (PB2) 3888.3 0.000000e+00 2211/2264 (97%)
EPI337544 A/swine/Minnesota/02475/2008 (A/H1N1) segment 1 (PB2) 3888.3 0.000000e+00 2211/2264 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3882.8 0.000000e+00 2210/2264 (97%)
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2182/2222 (98%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2211/2265 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2210/2264 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2210/2264 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2210/2264 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3882.8 0.000000e+00 2210/2264 (97%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3877.2 0.000000e+00 2209/2264 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3877.2 0.000000e+00 2209/2264 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3877.2 0.000000e+00 2209/2264 (97%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2207/2264 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2207/2264 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2207/2264 (97%)
EPI337369 A/swine/Minnesota/00709/2005 (A/H3N2) segment 1 (PB2) 3860.6 0.000000e+00 2206/2264 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2206/2265 (97%)
EPI312702 A/swine/North Carolina/239108/2010 (A/H1N2) segment 1 (PB2) 3849.5 0.000000e+00 2204/2264 (97%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3838.5 0.000000e+00 2202/2264 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3838.5 0.000000e+00 2203/2265 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2202/2264 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2192/2249 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3832.9 0.000000e+00 2201/2264 (97%)
EPI281298 A/swine/Texas/01976/2008 (A/H1N2) segment 1 (PB2) 3832.9 0.000000e+00 2201/2264 (97%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 3827.4 0.000000e+00 2200/2264 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3827.4 0.000000e+00 2200/2264 (97%)
EPI312654 A/swine/North Carolina/226124/2010 (A/H1N2) segment 1 (PB2) 3827.4 0.000000e+00 2200/2264 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3827.4 0.000000e+00 2200/2264 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3827.4 0.000000e+00 2197/2259 (97%)
EPI312670 A/swine/North Carolina/226126/2010 (A/H1N2) segment 1 (PB2) 3821.8 0.000000e+00 2199/2264 (97%)
EPI312662 A/swine/North Carolina/226125/2010 (A/H1N2) segment 1 (PB2) 3821.8 0.000000e+00 2199/2264 (97%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 3821.8 0.000000e+00 2199/2264 (97%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 3821.8 0.000000e+00 2199/2264 (97%)
EPI103129 A/swine/Alberta/14722/2005 (A/H3N2) segment 1 (PB2) 3821.8 0.000000e+00 2200/2265 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3820.0 0.000000e+00 2190/2251 (97%)
EPI337480 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI222671 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2198/2264 (97%)
EPI337520 A/swine/Minnesota/001444/2007 (A/H3N2) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)
EPI220864 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)
EPI220848 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)
EPI220840 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)
EPI220808 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 1 (PB2) 3810.8 0.000000e+00 2197/2264 (97%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:31 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top PB1 matches

EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 2856.0 0.000000e+00 1546/1546 (100%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 2811.7 0.000000e+00 1538/1546 (99%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 2811.7 0.000000e+00 1538/1546 (99%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 2806.2 0.000000e+00 1537/1546 (99%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 2734.2 0.000000e+00 1524/1546 (98%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 2728.6 0.000000e+00 1523/1546 (98%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 2712.0 0.000000e+00 1520/1546 (98%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 2706.5 0.000000e+00 1519/1546 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 2706.5 0.000000e+00 1519/1546 (98%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 2700.9 0.000000e+00 1516/1543 (98%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 2700.9 0.000000e+00 1518/1546 (98%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 2695.4 0.000000e+00 1517/1546 (98%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 2695.4 0.000000e+00 1517/1546 (98%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 2689.8 0.000000e+00 1514/1543 (98%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 2689.8 0.000000e+00 1516/1546 (98%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 2689.8 0.000000e+00 1516/1546 (98%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 2684.3 0.000000e+00 1516/1547 (97%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 2684.3 0.000000e+00 1515/1546 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 2684.3 0.000000e+00 1515/1546 (97%)
EPI295333 A/swine/South Dakota/152B/2009 (A/H1N2) segment 2 (PB1) 2684.3 0.000000e+00 1515/1546 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 2684.3 0.000000e+00 1515/1546 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 2684.3 0.000000e+00 1516/1547 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 2684.3 0.000000e+00 1516/1547 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 2684.3 0.000000e+00 1516/1547 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 2678.8 0.000000e+00 1514/1546 (97%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 2678.8 0.000000e+00 1514/1546 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 2678.8 0.000000e+00 1515/1547 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 2678.8 0.000000e+00 1514/1546 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 2678.8 0.000000e+00 1514/1546 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 2678.8 0.000000e+00 1515/1547 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 2678.8 0.000000e+00 1515/1547 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 2678.8 0.000000e+00 1514/1546 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 2676.9 0.000000e+00 1513/1545 (97%)
EPI188120 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 2 (PB1) 2675.1 0.000000e+00 1513/1546 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 2673.2 0.000000e+00 1514/1547 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 2667.7 0.000000e+00 1513/1547 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 2667.7 0.000000e+00 1513/1547 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 2664.0 0.000000e+00 1512/1547 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 2662.1 0.000000e+00 1512/1547 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 2662.1 0.000000e+00 1511/1546 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 2662.1 0.000000e+00 1512/1547 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 2662.1 0.000000e+00 1511/1546 (97%)
EPI337559 A/swine/Illinois/02251/2008 (A/H1N1) segment 2 (PB1) 2656.6 0.000000e+00 1511/1547 (97%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 2656.6 0.000000e+00 1511/1547 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 2656.6 0.000000e+00 1511/1547 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 2656.6 0.000000e+00 1510/1546 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 2656.6 0.000000e+00 1510/1546 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 2656.6 0.000000e+00 1511/1547 (97%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 2656.6 0.000000e+00 1511/1547 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 2656.6 0.000000e+00 1512/1548 (97%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 2654.8 0.000000e+00 1509/1545 (97%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 2654.8 0.000000e+00 1509/1545 (97%)
EPI293963 A/Minnesota/11/2010 (A/H3N2) segment 2 (PB1) 2651.1 0.000000e+00 1508/1546 (97%)
EPI291895 A/Wisconsin/12/2010 (A/H3N2) segment 2 (PB1) 2651.1 0.000000e+00 1509/1546 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 2651.1 0.000000e+00 1511/1548 (97%)
EPI337607 A/swine/Illinois/02510/2009 (A/H1N1) segment 2 (PB1) 2645.5 0.000000e+00 1509/1547 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1510/1548 (97%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI314789 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI312979 A/Pennsylvania/40/2010 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI302685 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI302680 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI302673 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI291867 A/Pennsylvania/14/2010 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 2645.5 0.000000e+00 1508/1546 (97%)
EPI337575 A/swine/Illinois/02695/2009 (A/H1N1) segment 2 (PB1) 2640.0 0.000000e+00 1508/1547 (97%)
EPI302668 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 2 (PB1) 2640.0 0.000000e+00 1507/1546 (97%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 2640.0 0.000000e+00 1507/1545 (97%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 2640.0 0.000000e+00 1508/1547 (97%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 2640.0 0.000000e+00 1508/1547 (97%)
EPI337583 A/swine/Illinois/02385/2008 (A/H1N1) segment 2 (PB1) 2634.4 0.000000e+00 1507/1547 (97%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 2634.4 0.000000e+00 1507/1547 (97%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 2634.4 0.000000e+00 1508/1548 (97%)
EPI177840 A/swine/Minnesota/66743/2006 (A/H1N2) segment 2 (PB1) 2634.4 0.000000e+00 1506/1546 (97%)
EPI166276 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 2 (PB1) 2634.4 0.000000e+00 1507/1547 (97%)
EPI128358 A/Ontario/1252/2007 (A/H3N2) segment 2 (PB1) 2634.4 0.000000e+00 1507/1547 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 2634.4 0.000000e+00 1506/1546 (97%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 2628.9 0.000000e+00 1506/1547 (97%)
EPI177839 A/swine/Minnesota/64585/2006 (A/H1N2) segment 2 (PB1) 2628.9 0.000000e+00 1506/1547 (97%)
EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 2628.9 0.000000e+00 1505/1546 (97%)
EPI292039 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 2 (PB1) 2627.1 0.000000e+00 1504/1545 (97%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 2627.1 0.000000e+00 1505/1547 (97%)
EPI337511 A/swine/Minnesota/02324/2008 (A/H1N2) segment 2 (PB1) 2623.4 0.000000e+00 1504/1546 (97%)
EPI337423 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 2623.4 0.000000e+00 1505/1547 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 2623.4 0.000000e+00 1504/1546 (97%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 2623.4 0.000000e+00 1505/1547 (97%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 2621.5 0.000000e+00 1506/1548 (97%)
EPI337543 A/swine/Minnesota/02475/2008 (A/H1N1) segment 2 (PB1) 2617.8 0.000000e+00 1504/1547 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 2617.8 0.000000e+00 1503/1546 (97%)
EPI281297 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 2617.8 0.000000e+00 1502/1544 (97%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 2617.8 0.000000e+00 1503/1545 (97%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 2617.8 0.000000e+00 1504/1547 (97%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 2617.8 0.000000e+00 1504/1547 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 2617.8 0.000000e+00 1504/1547 (97%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:35 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top PA matches

EPI339167 A/Maine/06/2011 (A/H3N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%)
EPI333149 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI335617 A/Pennsylvania/11/2011 (A/H3N2) segment 3 (PA) 3910.5 0.000000e+00 2139/2151 (99%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI302667 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI291866 A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI302674 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%)
EPI335628 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3853.2 0.000000e+00 2106/2116 (99%)
EPI337462 A/swine//Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2121/2152 (98%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3796.0 0.000000e+00 2120/2152 (98%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3790.4 0.000000e+00 2118/2151 (98%)
EPI337414 A/swine/Minnesota/01862/2007 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2118/2152 (98%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3759.1 0.000000e+00 2100/2132 (98%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3757.2 0.000000e+00 2114/2153 (98%)
EPI153495 A/swine/Ohio/24366/07 (A/H1N1) segment 3 (PA) 3755.4 0.000000e+00 2097/2129 (98%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%)
EPI166283 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 3 (PA) 3749.8 0.000000e+00 2092/2123 (98%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI337582 A/swine/Illinois/02385/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI337526 A/swine/Minnesota/001581/2007 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI307928 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI295331 A/swine/South Dakota/152B/2009 (A/H1N2) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI281283 A/swine/Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2151 (98%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2108/2148 (98%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%)
EPI337598 A/swine/Illinois/01917/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%)
EPI337558 A/swine/Illinois/02251/2008 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%)
EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%)
EPI337606 A/swine/Illinois/02510/2009 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2094/2130 (98%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%)
EPI337574 A/swine/Illinois/02695/2009 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI166271 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2102/2143 (98%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI281276 A/swine/Nebraska/02013/2008 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2104/2149 (97%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2107/2153 (97%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%)
EPI337550 A/swine/Minnesota/00484/2005 (A/H3N2) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%)
EPI166274 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 3 (PA) 3712.9 0.000000e+00 2090/2130 (98%)
EPI222673 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%)
EPI103169 A/swine/Manitoba/12707/2005 (A/H3N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%)
EPI323281 A/swine/Minnesota/7931/2007 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
EPI291886 A/Texas/14/2008 (A/H1N1) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
EPI222651 A/swine/Minnesota/1145/2007 (A/H3N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
EPI337390 A/swine/Nebraska/00722/2005 (A/H0) segment 3 (PA) 3690.7 0.000000e+00 2101/2152 (97%)
EPI323199 A/swine/Minnesota/5947/2007 (A/H3N2) segment 3 (PA) 3690.7 0.000000e+00 2102/2153 (97%)
EPI220915 A/swine/Texas/008648/2008 (A/H1N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%)
EPI323253 A/swine/Minnesota/65767/2006 (A/H3N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%)
EPI220931 A/swine/Texas/050625/2008 (A/H1N2) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%)
EPI337406 A/swine/Minnesota/02782/2009 (A/H3N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%)
EPI281274 A/swine/Texas/01976/2008 (A/H1N2) segment 3 (PA) 3674.1 0.000000e+00 2096/2149 (97%)
EPI337470 A/swine/Minnesota/01358/2006 (A/H1N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI244300 A/Kansas/13/2009 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2069/2110 (98%)
EPI182828 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%)
EPI337422 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%)
EPI291878 A/South Dakota/03/2008 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2067/2109 (98%)
EPI291847 A/Minnesota/10/2009 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)
EPI281275 A/swine/Iowa/02096/2008 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2094/2149 (97%)
EPI255753 A/swine/MN/23506/2009 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%)
EPI222681 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%)
EPI281285 A/swine/Minnesota/02053/2008 (A/H1N1) segment 3 (PA) 3657.5 0.000000e+00 2092/2148 (97%)
EPI281280 A/swine/Minnesota/02011/2008 (A/H1N2) segment 3 (PA) 3655.6 0.000000e+00 2093/2148 (97%)
EPI220850 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 3 (PA) 3651.9 0.000000e+00 2094/2152 (97%)
EPI337438 A/swine/Minnesota/02905/2009 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%)
EPI220874 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%)
EPI220834 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%)
EPI220794 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%)
EPI220786 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%)
EPI220778 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%)
EPI179353 A/swine/IL/07003243/2007 (A/H1N2) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%)
EPI337398 A/swine/Illinois/02064/2008 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2093/2153 (97%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:40 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top NP matches

EPI339164 A/Maine/06/2011 (A/H3N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%)
EPI312981 A/Pennsylvania/40/2010 (A/H3N2) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%)
EPI291864 A/Pennsylvania/14/2010 (A/H3N2) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%)
EPI293966 A/Minnesota/11/2010 (A/H3N2) segment 5 (NP) 2750.8 0.000000e+00 1494/1497 (99%)
EPI291892 A/Wisconsin/12/2010 (A/H3N2) segment 5 (NP) 2750.8 0.000000e+00 1494/1497 (99%)
EPI335630 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%)
EPI335619 A/Pennsylvania/11/2011 (A/H3N2) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%)
EPI333146 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%)
EPI335611 A/Pennsylvania/09/2011 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%)
EPI302683 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%)
EPI302682 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%)
EPI302670 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%)
EPI314792 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%)
EPI302671 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%)
EPI337039 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI337034 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%)
EPI244301 A/Kansas/13/2009 (A/H3N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%)
EPI291822 A/Michigan/09/2007 (A/H1N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%)
EPI337532 A/swine/Minnesota/001332/2006 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%)
EPI337596 A/swine/Illinois/01917/2007 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI337588 A/swine/Illinois/01918/2007 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI337412 A/swine/Minnesota/01862/2007 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI312650 A/swine/Indiana/240218/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI295328 A/swine/South Dakota/152B/2009 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)
EPI337556 A/swine/Illinois/02251/2008 (A/H1N1) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%)
EPI337580 A/swine/Illinois/02385/2008 (A/H1N1) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%)
EPI281256 A/swine/Minnesota/02011/2008 (A/H1N2) segment 5 (NP) 2654.8 0.000000e+00 1471/1488 (98%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%)
EPI337604 A/swine/Illinois/02510/2009 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI337436 A/swine/Minnesota/02905/2009 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI337396 A/swine/Illinois/02064/2008 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI337372 A/swine/Illinois/02238/2008 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)
EPI281255 A/swine/Missouri/02060/2008 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1472/1492 (98%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%)
EPI312706 A/swine/North Carolina/239108/2010 (A/H1N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%)
EPI281252 A/swine/Nebraska/02013/2008 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1472/1493 (98%)
EPI337572 A/swine/Illinois/02695/2009 (A/H1N1) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%)
EPI291816 A/Iowa/16/2009 (A/H3N2) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 2634.4 0.000000e+00 1470/1492 (98%)
EPI337352 A/swine/Minnesota/01146/2006 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI291884 A/Texas/14/2008 (A/H1N1) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
EPI337540 A/swine/Minnesota/02475/2008 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%)
EPI337365 A/swine/Minnesota/00709/2005 (A/H3N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%)
EPI281254 A/swine/North Carolina/02023/2008 (A/H1N1) segment 5 (NP) 2616.0 0.000000e+00 1464/1488 (98%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%)
EPI291999 A/swine/Iowa/H03HO7/2003 (A/H3N2) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%)
EPI291806 A/Iowa/05/2007 (A/H1N1) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%)
EPI337524 A/swine/Minnesota/001581/2007 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%)
EPI337404 A/swine/Minnesota/02782/2009 (A/H3N2) segment 5 (NP) 2604.9 0.000000e+00 1469/1498 (98%)
EPI307930 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 5 (NP) 2604.9 0.000000e+00 1469/1498 (98%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%)
EPI291829 A/Minnesota/03/2008 (A/H1N1) segment 5 (NP) 2599.4 0.000000e+00 1468/1498 (97%)
EPI337500 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%)
EPI337388 A/swine/Nebraska/00722/2005 (A/H0) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%)
EPI219369 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%)
EPI337428 A/swine/Indiana/00427/2004 (A/H1N2) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%)
EPI337336 A/swine/Kentucky/SG1118/2003 (A/H0) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%)
EPI255755 A/swine/MN/23506/2009 (A/H1N1) segment 5 (NP) 2588.3 0.000000e+00 1466/1498 (97%)
EPI291845 A/Minnesota/10/2009 (A/H1N1) segment 5 (NP) 2582.7 0.000000e+00 1465/1498 (97%)
EPI280413 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 5 (NP) 2582.7 0.000000e+00 1465/1498 (97%)
EPI219361 A/swine/Kansas/015252/2009 (A/H3N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%)
EPI292003 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI101395 A/turkey/Ohio/313053/04 (A/H3N2) segment 5 (NP) 2577.2 0.000000e+00 1463/1497 (97%)
EPI235272 A/swine/North Carolina/2003 (A/H3N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI226731 A/Iowa/CEID23/2005 (A/H1N1) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%)
EPI98714 A/swine/MI/PU243/04 (A/H3N1) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%)
EPI337444 A/swine/Minnesota/00611/2005 (A/H3N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI291996 A/swine/Iowa/H03LJ10/2003 (A/H1N1) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%)
EPI103210 A/turkey/Ontario/31232/2005 (A/H3N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI103192 A/swine/Ontario/33853/2005 (A/H3N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI103120 A/Ontario/RV1273/2005 (A/H3N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI15274 A/Swine/Korea/CY02/02 (A/H1N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI9385 A/Swine/Ohio/891/01 (A/H1N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%)
EPI323206 A/swine/Minnesota/65767/2006 (A/H3N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI182819 A/swine/Quebec/4001/2005 (A/H3N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI103174 A/swine/Manitoba/12707/2005 (A/H3N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI103138 A/swine/Alberta/14722/2005 (A/H3N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%)
EPI98730 A/swine/IN/PU542/04 (A/H3N1) segment 5 (NP) 2556.9 0.000000e+00 1459/1497 (97%)
EPI337954 A/swine/Illinois/02450/2008 (A/H0) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%)
EPI314334 A/turkey/BC/1529-3/2005 (A/H3N2) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%)
EPI103156 A/swine/British Columbia/28103/2005 (A/H3N2) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%)
EPI337516 A/swine/Minnesota/001444/2007 (A/H3N2) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:45 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
MP matches

EPI339166 A/Maine/06/2011 (A/H3N2) segment 7 (MP) 1785.0 0.000000e+00 966/966 (100%)
EPI338531 A/swine/Iowa/A01049755/2011 (A/H1N2) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI338530 A/swine/Iowa/A01049765/2011 (A/H1N2) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI338529 A/swine/Iowa/A01049766/2011 (A/H1N2) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI324199 A/swine/MB/31/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI324183 A/swine/MB/10422/2009 (A/H1N1) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI252549 A/Ontario/9698/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI214088 A/Toronto/T9842/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI214080 A/Toronto/T5362/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186737 A/Canada-MB/RV2020/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186735 A/Canada-MB/RV2013/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186734 A/Canada-MB/RV1982/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186733 A/Canada-MB/RV1977/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186731 A/Canada-MB/RV1964/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI186718 A/Canada-MB/RV2023/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI180276 A/Shandong/1/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI179594 A/Shandong/1/2009 (A/H1N1 swl) segment 7 (MP) 1762.8 0.000000e+00 962/966 (99%)
EPI223298 A/Texas/42163291/2009 (A/H1N1 swl) segment 7 (MP) 1759.1 0.000000e+00 961/966 (99%)
EPI333461 A/Mexico/47N/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI325614 A/swine/MN/25618/2011 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324229 A/swine/MB/36/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324223 A/swine/MB/22/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324219 A/swine/MB/54/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324207 A/swine/MB/32-2/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324175 A/swine/MB/46/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI324148 A/SW/SK/12-71/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI320661 A/Mexico City/016/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI317069 A/Managua/3755.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI317064 A/Managua/4032.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI316726 A/Wisconsin/629-D01183/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI316700 A/Wisconsin/629-D00889/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI316640 A/Boston/139/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI315428 A/Boston/594/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI313117 A/Beijing/16/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI313103 A/New York/4557/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308552 A/Managua/WRAIR8997F/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308544 A/Managua/WRAIR8964F/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308536 A/Lima/WRAIR8893F/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308424 A/Managua/WRAIR1689P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308312 A/San Diego/WRAIR1657P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308296 A/San Diego/WRAIR1654P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308264 A/San Diego/WRAIR1648P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308256 A/San Diego/WRAIR1647P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI308240 A/San Diego/WRAIR1644P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI307236 A/Hong Kong/415742Md/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI307226 A/Hong Kong/415742/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI307220 A/Hong Kong/415742M/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI304557 A/Korea/S1/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI303270 A/Canada-MB/RV2013-10/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 959/963 (99%)
EPI300799 A/Taiwan/14/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI297580 A/Mexico/LaGloria-3/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI295588 A/Cataluna/GP29/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI295585 A/Cataluna/GP24/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI295556 A/Cataluna/GP25/2009 (A/H1N1 swl) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI292792 A/Ontario/156785/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI292783 A/Ontario/152846/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI292775 A/Ontario/152439/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI292759 A/Ontario/147265/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI292751 A/Ontario/142358/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283736 A/Managua/2729.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283575 A/Managua/3490.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283567 A/Managua/5953.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283559 A/Managua/4736.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283543 A/Managua/4209.04/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283535 A/Managua/3225.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283527 A/Managua/4590.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283251 A/Managua/1973.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283243 A/Managua/4960.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283235 A/Managua/5595.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283227 A/Managua/4747.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283195 A/Managua/4064.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283187 A/Managua/921.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283179 A/Managua/5230.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283171 A/Managua/5119.06/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283163 A/Managua/2978.04/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283147 A/Managua/4012.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283099 A/Athens/INS271/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283046 A/San Diego/WR1650P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283038 A/San Diego/WR1641P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI283014 A/Brawley/WR1636P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282990 A/San Diego/WR1633P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282983 A/San Diego/WR1632P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282970 A/San Diego/WR1630P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282962 A/San Diego/WR1629P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282930 A/San Diego/WR1625P/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282914 A/Silver Spring/WRAIRSP510P3/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282906 A/Silver Spring/WRAIRSP510P20/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282898 A/Silver Spring/WRAIRSP510P2/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282890 A/Silver Spring/WRAIRSP510P18/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282882 A/Silver Spring/WRAIRSP510P12/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282874 A/Silver Spring/WRAIRSP510P10/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282600 A/Managua/527.04/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282592 A/Managua/5273.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282576 A/Managua/2750.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282544 A/Managua/5590.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282520 A/Managua/2652.01/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282512 A/Managua/3434.02/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282504 A/Managua/3214.04/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282488 A/Managua/4606.06/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)
EPI282480 A/Managua/2999.03/2009 (A/H1N1) segment 7 (MP) 1757.3 0.000000e+00 961/966 (99%)

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 Post subject: Re: trH3N2 Case In Maine
PostPosted: Mon Oct 17, 2011 7:49 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
NS Matches

EPI339165 A/Maine/06/2011 (A/H3N2) segment 8 (NS) 595.7 4.230306e-169 322/322 (100%)
EPI312978 A/Pennsylvania/40/2010 (A/H3N2) segment 8 (NS) 586.5 2.545988e-166 319/320 (99%)
EPI293969 A/Minnesota/11/2010 (A/H3N2) segment 8 (NS) 586.5 2.545988e-166 319/320 (99%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 573.6 1.982143e-162 318/322 (98%)
EPI335633 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 571.7 7.129054e-162 311/312 (99%)
EPI335614 A/Pennsylvania/09/2011 (A/H3N2) segment 8 (NS) 571.7 7.129054e-162 311/312 (99%)
EPI333147 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 571.7 7.129054e-162 311/312 (99%)
EPI244304 A/Kansas/13/2009 (A/H3N2) segment 8 (NS) 571.7 7.129054e-162 311/312 (99%)
EPI323271 A/swine/Minnesota/66960/2006 (A/H3N2) segment 8 (NS) 569.9 2.564064e-161 316/320 (98%)
EPI335625 A/Pennsylvania/10/2011 (A/H3N2) segment 8 (NS) 566.2 3.316826e-160 310/312 (99%)
EPI335622 A/Pennsylvania/11/2011 (A/H3N2) segment 8 (NS) 566.2 3.316826e-160 310/312 (99%)
EPI281223 A/swine/Ohio/02026/2008 (A/H1N1) segment 8 (NS) 564.3 1.192943e-159 315/320 (98%)
EPI281217 A/swine/North Carolina/02084/2008 (A/H1N1) segment 8 (NS) 564.3 1.192943e-159 315/320 (98%)
EPI173662 A/swine/OH/511445/2007 (A/H1N1) segment 8 (NS) 564.3 1.192943e-159 315/320 (98%)
EPI337461 A/swine//Ohio/02026/2008 (A/H1N1) segment 8 (NS) 562.5 4.290586e-159 314/319 (98%)
EPI220928 A/swine/Texas/050593/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220903 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220895 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220887 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220879 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220855 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220847 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220839 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220831 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220823 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220815 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220807 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220791 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220783 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI220775 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI219372 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 8 (NS) 562.5 4.290586e-159 316/322 (98%)
EPI314794 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI302684 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI302681 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI302669 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI291889 A/Wisconsin/12/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI291861 A/Pennsylvania/14/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI291834 A/Minnesota/09/2010 (A/H3N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI291819 A/Michigan/09/2007 (A/H1N2) segment 8 (NS) 560.7 1.543169e-158 305/306 (99%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI222678 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI184475 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI184457 A/mallard/South Dakota/Sg-00125/2007 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 558.8 5.550223e-158 314/320 (98%)
EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 557.0 1.996215e-157 313/319 (98%)
EPI337379 A/swine/Minnesota/001200/2006 (A/H1N1) segment 8 (NS) 557.0 1.996215e-157 313/319 (98%)
EPI337360 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 8 (NS) 557.0 1.996215e-157 313/319 (98%)
EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 557.0 1.996215e-157 313/319 (98%)
EPI225763 A/swine/Minnesota/D06-28374.35/2006 (A/H1N1) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI220911 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI220871 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI220863 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI219364 A/swine/Kansas/015252/2009 (A/H3N2) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI177595 A/swine/Hong Kong/78/2003 (A/H1N2) segment 8 (NS) 557.0 1.996215e-157 315/322 (97%)
EPI337509 A/swine/Minnesota/02324/2008 (A/H1N2) segment 8 (NS) 555.1 7.179668e-157 314/321 (97%)
EPI337477 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 8 (NS) 555.1 7.179668e-157 314/321 (97%)
EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI323266 A/swine/Minnesota/66853/2006 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI314691 A/swine/QC/440-A/2009 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI314683 A/swine/QC/1840-2/2009 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI314639 A/swine/QC/382/2009 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI291958 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI222660 A/swine/Minnesota/D07-031231.3/2007 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI184469 A/mallard/South Dakota/Sg-00127/2007 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 311/317 (98%)
EPI184463 A/northern pintail/South Dakota/Sg-00126/2007 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI168649 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 553.3 2.582268e-156 313/320 (97%)
EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI337493 A/swine/Illinois/SG1141/2003 (A/H1N1) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI337345 A/swine/Iowa/01700/2007 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI295329 A/swine/South Dakota/152B/2009 (A/H1N2) segment 8 (NS) 551.4 9.287487e-156 314/322 (97%)
EPI291959 A/swine/Iowa/H02AS8/2002 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 314/322 (97%)
EPI158872 A/turkey/MN/366767/2005 (A/H3N2) segment 8 (NS) 551.4 9.287487e-156 312/319 (97%)
EPI302672 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 8 (NS) 549.6 3.340374e-155 304/307 (99%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 549.6 3.340374e-155 311/318 (97%)
EPI314675 A/swine/QC/414/2009 (A/H3N2) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI291961 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI291951 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI281214 A/swine/Texas/01976/2008 (A/H1N2) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI225761 A/swine/Minnesota/D06-058068/2006 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI222655 A/swine/Minnesota/1145/2007 (A/H3N2) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI220745 A/swine/Illinois/SG443/2008 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI220743 A/swine/Illinois/D08-039220/2008 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI98736 A/swine/IN/PU542/04 (A/H3N1) segment 8 (NS) 547.7 1.201412e-154 312/320 (97%)
EPI8411 A/Wisconsin/10/98 (A/H1N1) segment 8 (NS) 547.7 1.201412e-154 313/321 (97%)
EPI337597 A/swine/Illinois/01917/2007 (A/H1N1) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)
EPI337589 A/swine/Illinois/01918/2007 (A/H1N1) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)
EPI337565 A/swine/Illinois/01981/2008 (A/H1N1) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)
EPI337557 A/swine/Illinois/02251/2008 (A/H1N1) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)
EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)
EPI337541 A/swine/Minnesota/02475/2008 (A/H1N1) segment 8 (NS) 545.9 4.321047e-154 311/319 (97%)

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