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PostPosted: Fri Nov 25, 2011 5:34 pm 
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Commentary

http://www.recombinomics.com/News/11251 ... gence.html

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PostPosted: Fri Nov 25, 2011 6:28 pm 
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A new flu strain linked to pigs is turning up in Iowa.

The Centers for Disease Control and Prevention says it's seen a total of 18 cases of the H3N2 virus over the last two years.

In Iowa, three central Iowa children were sickened, but they've recovered.

The flu strain also popped up in Pennsylvania, Maine and Indiana.

Officials say this year's vaccine may offer some protection.

H3N2 seems to be mild with only the standard flu symptoms.

Experts say it spreads slowly and is not as threatening as the H1N1 strain that sickened thousands of people back in 2009.

http://www.kwwl.com/story/16123368/seve ... ed-in-iowa

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PostPosted: Fri Nov 25, 2011 6:32 pm 
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Health officials on alert for outbreak of new swine flu strain
By Daily Mail Reporter

Last updated at 10:17 PM on 25th November 2011

Image
U.S. health officials are on the alert for more cases of a new swine flu strain that was found in three children in Iowa this month.
Ten people in the U.S. have been infected since July by S-OtrH3N2 viruses that picked up a gene from the 2009 H1N1 swine flu pandemic.
The new flu strain combines a rare influenza virus (H3N2) circulating in North American pigs and the H1N1 virus from the 2009 outbreak.
New warning: Of the ten U.S. swine flu cases reported since July, seven of them had been in contact with pigs
New flu strains begin when flu viruses combine in new ways.
They can pose considerable health risks because people have not yet developed immunity to them, ABC News reports.
The Centers for Disease Control and Prevention (CDC) reported the new cases in Wednesday's Morbidity and Mortality Weekly Report.
It also reported that of the other seven cases of the new swine flu, three were in Pennsylvania, two were in Maine and two in Indiana.
In the seven cases all the patients or close contacts had been recently been with pigs.
CDC experts believe the fact that the three new cases did not go near pigs shows that there may be limited person-to-person contact with the new virus.
The CDC said it has developed a 'candidate vaccine virus' that could be used to make a human vaccine against S-OtrH3N2 viruses
It has already sent it off to vaccine manufacturers.
One of the three Iowa children, a healthy girl referred to as Patient A, became sick during the second week of November.
Her doctor tested her and sent a respiratory sample to the Iowa state laboratory for further analysis.
Patient B, a boy, developed a flu-like illness two days after Patient A became ill.
One day after Patient B became sick, his brother, Patient C, also became ill.

Image
Recommended: Health experts believe the new strain should respond to Tamiflu

All three children had been at the same gathering on the first day Patient A became sick.
Iowa epidemiologists launched an investigation and decided that the gathering was the only common link among the three children’s illnesses.
None of their families had travelled recently or attended community events.
Eight days after Patient A became ill, Iowa state laboratory testing said that the three might have S-OtrH3N2 influenza.
The CDC went on to confirmed it was that strain, which included the matrix (M) gene from the 2009 H1N1 pandemic.
The new flu strain is resistant to rimantidine and amantadine, both commonly used antiviral drugs.
Health experts said it would most likely respond to osteltamivir (Tamiflu) and zanamivir (Relenza).
CDC scientists said they believe this year’s seasonal flu vaccine to provide adults with limited protection from the new flu virus, but that it wouldn’t protect children.
Doctors who suspect swine flu infections in their patients should treat them with Tamiflu where appropriate, CDC recommentds.
Doctors should get nose and throat specimens and send them to state public health labs, which should report them to CDC.
CDC also encourages anyone who has contact with pigs and develops a flu-like illness to be tested.


Read more: http://www.dailymail.co.uk/news/article ... z1el7ZuH8u

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PostPosted: Fri Nov 25, 2011 6:35 pm 
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niman wrote:
Health officials on alert for outbreak of new swine flu strain
By Daily Mail Reporter

New warning: Of the ten U.S. swine flu cases reported since July, seven of them had been in contact with pigs
Read more: http://www.dailymail.co.uk/news/article ... z1el7ZuH8u

The media and CDC are hazardous to the world's health.

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PostPosted: Fri Nov 25, 2011 6:53 pm 
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Michigan week 46 report notes Iowa cluster:

Updates of Interest:
 National: Iowa reports 3 human cases of triple
reassortment swine influenza A/H3N2 with
possible human-to-human transmission

http://www.michigan.gov/mdch/0,1607,7-1 ... --,00.html

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PostPosted: Fri Nov 25, 2011 10:28 pm 
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The Centers for Disease Control and Prevention has confirmed three mildly ill children with viruses similar to the swine-origin influenza A (H3N2) viruses identified in three other states. These viruses contain the "matrix (M) gene segment" from the 2009 "Swine Flu" pandemic known as H1N1 virus.

This combination of genes was first identified in a person in July. There have been several more infections with this virus, bringing the total number of human infections to 10 (Indiana 2, Pennsylvania 3, Maine 2, and Iowa 3). All 10 patients have recovered and the majority of cases had relatively mild symptoms, although 3 patients were hospitalized.

This new occurrence of the virus is being described as a "novel strain" and as yet does not appear to be causing significant illness or spreading at any great rate, which was the fear in 2009. Iowa has increased its monitoring of any influenza type illnesses.

Unfortunately these new viruses are different enough from human influenza A (H3N2) viruses, so that the seasonal vaccine is not expected to provide much protection among adults and no protection to children. However, laboratory tests so far show the viruses are susceptible to the antiviral drugs oseltamivir (Tamiflu®) and zanamivir (Relenza®). CDC recommends these drugs for treatment of seasonal and these swine-origin influenza viruses.

Prior to the three cases in Iowa, most human infections with this virus were associated with exposure to some form or other of pig farming. In Iowa, however, no swine exposure has been pinpointed.

So far scientists think that unsustained human-to-human transmission may have occurred. The viruses have been detected in swine in several states in the United States. Transmission can only occur from live animals and the CDC states that swine influenza viruses do not spread through contact with pork or pork products. Eating properly handled and cooked pork is safe.

As part of routine preparedness measures to counter possible pandemic threats posed by novel influenza viruses in the event that they gain the ability to spread easily from person-to-person, CDC has developed a candidate vaccine virus and provided it to manufacturers. These cases will be officially reported in the MMWR and FluView.

The CDC also recommends that doctors and healthcare professionals remain vigilant and where they suspect novel influenza viruses might be acting to submit nose and throat swabs for testing.

Written by Rupert Shepherd
http://www.medicalnewstoday.com/articles/238265.php

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PostPosted: Sat Nov 26, 2011 8:01 am 
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Published Date: 2011-11-25 14:57:22
Subject: PRO/AH/EDR> Influenza (71): USA (IA) swine-origin H3N2 reassortant, WHO
Archive Number: 20111125.3448

INFLUENZA (71): USA (IOWA) SWINE-ORIGIN H3N2 REASSORTANT, WHO
*************************************************************

A ProMED-mail post
http://www.promedmail.org
ProMED-mail is a program of the
International Society for Infectious Diseases
http://www.isid.org
Date: Thu 24 Nov 2011Source: WHO Global Alert and Response (GAR) Disease Outbreak News[edited]http://www.who.int/csr/don/2011_11_24/en/index.html


Influenza like illness in the United States of America
------------------------------------------------------
The United States Government has reported 3 cases of human infection
with swine origin triple reassortant Influenza A H3N2. Between 10 and
13 Nov 2011, three children (aged 11 months, 2 years, and 3 years)
experienced onset of febrile respiratory illness. All 3 children had
visited the same health care provider in Iowa State. None of them were
hospitalized and all 3 have recovered.

Laboratory testing conducted on 18 Nov 2011 in the State Hygienic
Laboratory at the University of Iowa showed a swine-origin triple
reassortant influenza A (H3N2) (S-OtrH3N2) virus. This was confirmed
by sequencing at the Centers for Disease Control and Prevention (CDC)
on 20 Nov 2011

The 3 children attend the same daycare facility. There is an ongoing
investigation and to date, no epidemiological link to swine has been
identified in any of the 3 children. Additional investigation is
currently underway to identify and characterize the illness in other
daycare attendees, family members, or other contacts, and to determine
any exposure to swine.

These are 16th, 17th, and 18th cases of human infection with swine
origin triple reassortant influenza A (H3N2) detected in the United
States since 2009, and the 8th, 9th, and 10th cases reported this year
[2011].

WHO is closely following the situation with the US Government, CDC,
and other partners.

--
Communicated by:
ProMED-mail Rapporteur Marianne Hopp

[Another novel swine flu virus with human genes was found this year
(2011) in mainland (China) pigs at a Hong Kong slaughterhouse. But the
swine flu H3N2 virus was considered unlikely to be a "major" human
health risk, according to the Hong Kong Centre for Food Safety. 15
pigs were found infected with "essentially a swine influenza H3N2
virus that has picked up some genes of human swine influenza virus,"
the Centre stated. They were detected out of 1000 samples taken
between August and mid-October 2011. However, according to Malik
Peiris (Chair Professor, Department of Microbiology, University of
Hong Kong) the H3N2 subtype seen in these pigs is not the same
swine-originated new H3N2 virus that has infected the 10 people in the
United States since July 2011. - Mod.CP]


See Also

Influenza (70): USA (IA) swine-origin H3N2 reassortant 20111124.3438
Influenza (69): USA (IA) swine-origin H3N2 reassortant 20111123.3430
Influenza (68): Hong Kong swine-origin H3N2 reassortant 20111119.3411
Influenza (66): USA swine-origin H3N2 reassortant, update
20111105.3298
Influenza (63): USA (ME, NOT NH) swine-origin H3N2 reassortant
20111102.3260
Influenza (60): USA (ME) swine-origin H3N2 reassortant 20111021.3134
Influenza (54): (PA) swine-origin H3N2 reassortant, comment
20110913.2789
Influenza (52): (PA), swine-origin H3N2 reassortant, 3 cases
20110906.2723
Influenza (51): swine-origin H3N2 reassortant, children 20110902.2685
Influenza (40): H3N2/H1N1 reassortant ex patient 20110609.1749]
.................................................cp/mj/lm

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PostPosted: Sat Nov 26, 2011 8:04 am 
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WHO trying to hit the sweet spot in responding to puzzling new flu virus

By: Helen Branswell, The Canadian Press

Posted: 11/26/2011 3:31 AM | ) | Last Modified: 11/26/2011 5:07 AM
1
Image
This scanning electron micrograph view depicts some of the ultrastructural details displayed by H3N2 influenza virions responsible for casing illness in Indiana and Pennsylvania in 2011. THE CANADIAN PRESS/ho-Centers for Disease Control and Prevention

The spread of an odd new flu virus that has been jumping from pigs to people in parts of the United States has the World Health Organization gearing up its response planning, a senior official of the agency says.

The UN health body is figuring out what needs to be done if the virus continues to spread and a global response is required, Dr. Keiji Fukuda, assistant director-general for health security and environment said in an interview from Geneva.

The WHO wants to be ready to make recommendations and issue guidance to countries if the need arises — though Fukuda stressed at this point it is far from certain there will be that need.

"We're very aware that we don't want to over-play or under-play. We're trying to get that right," says Fukuda, a leading influenza expert.

"(We're) trying to make sure that we're ready to move quickly, if we have to move quickly, but also trying not to raise alarm bells."

The desire to be prepared without raising alarm is a legacy of the 2009 H1N1 pandemic. The WHO was heavily criticized in Europe for declaring that event a pandemic when the outbreak turned out to be far milder than originally feared.

But what exactly the agency — and the world — might need to prepare for now is very unclear. With the public relations problems of the 2009 outbreak fresh in the minds of health officials, no one is using the "p" word these days.

Yet in some respects the parallels to 2009 are striking.

A new swine-origin flu virus is causing sporadic infections in parts of the United States. Since the new virus was first spotted in July, 10 cases have been confirmed in Maine, Indiana, Pennsylvania and Iowa. All have been children under 10, with a lone exception — a 58-year-old adult. Three of the cases have required hospitalization but most of the infections have been mild, like regular flu.

It is an influenza A virus of the H3N2 subtype, a distant cousin of H3N2 viruses that circulate in humans.

Scientists at the U.S. Centers for Disease Control say the hemagglutinin gene, the H3, looks like that of H3N2 viruses that used to circulate in people in the early 1990s.

It is sufficiently different from contemporary human viruses that the H3N2 component of the seasonal flu shot is not expected to protect against this virus, though it might boost antibody levels in those who were exposed to the earlier H3N2 viruses.

The CDC is still doing serological work — checking stored blood samples for antibodies that react to this virus — to try to figure out how much vulnerability there is to the new virus. The current thinking is most people over the age of 21 or so would have had exposure to similar flu viruses and would therefore have some protection against it.

Teenagers and children might not, though even that's not 100 per cent certain. Flu expert Malik Peiris, chair of the department of microbiology at the University of Hong Kong, says he thinks exposure to contemporary H3N2 viruses might provide some protection against these swine viruses.

"It is important to see the serological data to see how much vulnerability or susceptibility there is in the human population," Peiris says.

Dr. Arnold Monto, a flu expert at the University of Michigan, says if a major part of the human population has antibodies that react to the virus, it may not be much of a threat.

"If there's a lot of immunity in the population, there probably will not be any kind of extensive spread except maybe in these little clusters where you have little folks who don't have much immunity to anything," he says.

Fukuda, on the other hand, says further spread cannot be ruled out: "I think that certainly there's no reason why this virus, if it continues to spread human to human couldn't move from country to country among young people."

The first seven infections appeared to have been instances where the virus passed from pigs to people. But the most recent cases, in Iowa, seem pretty clearly to have involved person-to-person spread.

There were three confirmed cases in that cluster, but it was likely larger. Two contacts of the first confirmed case were also ill, but were not tested. And the people in this cluster seemingly had no contact with pigs, suggesting they caught the virus from an unidentified person.

The virus has been isolated from pigs in the U.S. Midwest, says Dr. Nancy Cox, head of the CDC's influenza division, though she won't specify where.

Canadian authorities say there are no reports of the virus in this country. And the WHO knows of no cases other than those in the United States, Fukuda says.

To some in the flu world, the situation is reminiscent of 1977. That year an H1N1 virus started circling the globe, causing infections mainly in young people. H1N1 viruses hadn't been spotted for 20 years at that point; it is widely believed the virus was accidentally released from a laboratory.

On some lists of pandemics, the 1977 outbreak is named. Most flu experts, though, do not consider it a pandemic. Some, like Monto, refer to it as a pseudo pandemic.

While the flu world doesn't want to over-react to this virus, it doesn't feel safe ignoring it either.

The CDC asked the laboratory that makes seed strains for vaccine companies to produce a vaccine candidate virus for this H3N2. It is already in the hands of manufacturers.

And the WHO is looking at what it needs to do to be ready. One of the tasks it is currently working on is trying to figure out what to call this virus, if it should continue to spread.

Naming the pandemic virus was a nightmare for public health officials in the start of the 2009 outbreak.

Flu experts accustomed to talking about viruses based on the animals they normally infected — bird flu, swine flu, dog flu, human flu — were caught in a political vise when powerful agricultural interests objected to references to the virus's swine origins.

But calling the virus simply H1N1 didn't differentiate it from the human H1N1 that was circulating before the pandemic. (It has since disappeared.) Recently the pandemic virus was officially named H1N1 pdm09.

This swine-origin H3N2 virus poses the same naming challenges.

And this time, the WHO wants to be prepared. Fukuda says the WHO has been in discussion with its animal health counterparts, the UN Food and Agriculture Agency and the OIE, the World Organization for Animal Health, to work out a possible name.

"We're pretty aware that we don't want to increase stigma, we're pretty aware that it is always possible for people to get afraid of food or to enact trade embargoes or things like that. So to the extent that naming the virus in a way which minimizes those things can be done, we think it's better," he says.

"It's just one of those lessons that we've learned. Take a look at those things early. So that's what we're doing."

Still, it's all being done with the realization that there may be no need for heightened public health responses, apart from the increased surveillance the U.S. has mounted.

"This is one of the things that we've discussed," Fukuda says.

"This could be the only cluster we see," he says, referring to the Iowa cases. "We could see some sort of stuttering picture for a long time. Or we could see things jump. All of those things are possible."

http://www.winnipegfreepress.com/arts-a ... 25253.html

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PostPosted: Sat Nov 26, 2011 8:10 am 
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niman wrote:
WHO trying to hit the sweet spot in responding to puzzling new flu virus

By: Helen Branswell, The Canadian Press

The virus has been isolated from pigs in the U.S. Midwest, says Dr. Nancy Cox, head of the CDC's influenza division, though she won't specify where.

http://www.winnipegfreepress.com/arts-a ... 25253.html

The above response is curious because the identification of the virus is VERY straightford, and currently this is only one public sequence that matches, which is in New York. Claiming the "midwest" and ignoring the public isolate in New York raises serious questions about what the CDC is calling "the virus", which from a sequence point of view, is very straightforded and the New York sequnece is public and available to anyone with an internet connection who can click on a link.

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PostPosted: Sat Nov 26, 2011 8:21 am 
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niman wrote:
niman wrote:
WHO trying to hit the sweet spot in responding to puzzling new flu virus

By: Helen Branswell, The Canadian Press

The virus has been isolated from pigs in the U.S. Midwest, says Dr. Nancy Cox, head of the CDC's influenza division, though she won't specify where.

http://www.winnipegfreepress.com/arts-a ... 25253.html

The above response is curious because the identification of the virus is VERY straightford, and currently this is only one public sequence that matches, which is in New York. Claiming the "midwest" and ignoring the public isolate in New York raises serious questions about what the CDC is calling "the virus", which from a sequence point of view, is very straightforded and the New York sequnece is public and available to anyone with an internet connection who can click on a link.

The only public match was deposited at Genbank on Oct 27 and released on Nov 20. Collection was on Sept 13 and certainly NOT in the midwest

http://www.ncbi.nlm.nih.gov/nuccore/JN940422

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