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niman
PostPosted: Tue Nov 08, 2011 9:24 am 
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Indonesian MoH has released HA sequences from the Bali cluster - A/Indonesia/NIHRD11815/2011 (29F) A/Indonesia/NIHRD11766/2011 (5F), A/Indonesia/NIHRD11771/2011 (10M).

The 5F sequence shares polymorphisms with the 10M in the 5' end of the sequence, but shares polymorphsism with the 29F in the 3' end signaling homologous recombination within the cluster.

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niman
PostPosted: Tue Nov 08, 2011 9:35 am 
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G13A / T14C combination pedigree (in 5F and 10M but not 29F)

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 9:36 am 
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G25T

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340810 A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340790 A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324340 A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI233764 A/chicken/Nigeria/08RS848-59/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI164763 A/Indonesia/7272/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI164208 A/Indonesia/8228/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI162940 A/Indonesia/7261/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI120012 A/Indonesia/TLL014/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI120008 A/Indonesia/TLL012/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI55776 A/Indonesia/CDC1047S/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI55757 A/Indonesia/CDC1047/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI55738 A/Indonesia/CDC1046T/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI55719 A/Indonesia/CDC1046/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI55643 A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI49264 A/Indonesia/CDC887/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI49164 A/Indonesia/CDC938E/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI49145 A/Indonesia/CDC938/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 9:37 am 
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T42A

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340810 A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340790 A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324340 A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 9:58 am 
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T48C

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340810 A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340790 A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324340 A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 10:01 am 
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A87G

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI290505 A/duck/Tsukuba/168/2005 (A/H5N2) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI283815 A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI272233 A/wild bird/Korea/L60-2/2008 (A/H5N2) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI241274 A/duck/Korea/GJ54/2004 (A/H5N2) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI233644 A/chicken/Nigeria/08RS848-38/2006 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI233420 A/chicken/Nigeria/08VIR4337-497/2007 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI180943 A/chicken/Laos/37/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI180935 A/chicken/Laos/35/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI164763 A/Indonesia/7272/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI164208 A/Indonesia/8228/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)
EPI162940 A/Indonesia/7261/2008 (A/H5N1) segment 4 (HA) 27.0 7.211639e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 10:04 am 
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Note that A/Indonesia/NIHRD11073/2011 is a case from Jakarta from early 2011

viewtopic.php?f=5&t=7674

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niman
PostPosted: Tue Nov 08, 2011 11:24 am 
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Posts: 27522
Location: Pittsburgh, PA USA
A148G

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340788 A/chicken/Klaten/BBVW-109-II/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340786 A/chicken/Jombang/BBVW-166-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340784 A/chicken/Sleman/BBVW-150-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340780 A/chicken/Lamongan/BBVW-170-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340772 A/chicken/Wonogiri/BBVW-1563-XII/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340770 A/chicken/Banyumas/BBVW-1555b-XII/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340100 A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321575 A/duck/Sleman/BBVW-29-32189/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321574 A/duck/Sleman/BBVW-29-32187/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321573 A/duck/Sleman/BBVW-29-32185/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321554 A/duck/Magelang/BBVW-680-41052/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321551 A/duck/Magelang/BBVW-680-41050/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321550 A/duck/Magelang/BBVW-680-41047/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321546 A/duck/Magelang/BBVW-680-41043/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321545 A/duck/Magelang/BBVW-680-41042/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321529 A/duck/Bantul/BBVW-78-22210/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321517 A/duck/Bantul/BBVW-1005-24442/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321404 A/chicken/Sleman/BBVW-82-65/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321403 A/chicken/Sleman/BBVW-71-236/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321402 A/chicken/Sleman/BBVW-71-231/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321401 A/chicken/Sleman/BBVW-70-1083/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321400 A/chicken/Sleman/BBVW-663-55/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321395 A/chicken/Sleman/BBVW-28-95/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321394 A/chicken/Sleman/BBVW-27-92/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321393 A/chicken/Sleman/BBVW-27-91/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321374 A/chicken/Magelang/BBVW-680-773/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321373 A/chicken/Magelang/BBVW-680-772/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321372 A/chicken/Magelang/BBVW-680-771/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321363 A/chicken/Magelang/BBVW-662-762/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321309 A/chicken/Bantul/BBVW-678-443/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI321308 A/chicken/Bantul/BBVW-678-441/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI314362 A/chicken/Egypt/CL6/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI297552 A/chicken/Huadong/4/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI284476 A/chicken/Vietnam/NCVD-093/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI284475 A/chicken/Vietnam/NCVD-05/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI284474 A/chicken/Vietnam/NCVD-04/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI284473 A/chicken/Vietnam/NCVD-03/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI284453 A/chicken/Vietnam/NCVD-swab276/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275862 A/chicken/Shanxi/10/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275854 A/chicken/Shandong/A-5/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275846 A/chicken/Shandong/A-10/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275830 A/chicken/Ningxia/24/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275822 A/chicken/Liaoning/A-11/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275814 A/chicken/Liaoning/A-1/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275790 A/chicken/Jiangsu/18/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275758 A/chicken/Henan/A-7/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI275750 A/chicken/Hebei/A-8/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272181 A/chicken/Shanxi/QX2/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272176 A/chicken/Ningxia/QH14/2009 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272155 A/chicken/Tibet/QX2/2009 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272154 A/chicken/Anhui/QG5/2008 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272153 A/chicken/Jiangsu/Q305/2008 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI271854 A/chicken/Egypt/C3Br11/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI259573 A/chicken/Egypt/C1Li9/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI259572 A/chicken/Egypt/C1Lu2/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI259571 A/chicken/Egypt/C1Tr13/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI259569 A/duck/Egypt/D3Lu6/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI259006 A/great crested-grebe/Qinghai/1/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI254388 A/chicken/Vietnam/NCVD-137/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI254387 A/chicken/Vietnam/NCVD-136/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI254386 A/chicken/Vietnam/NCVD-135/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI254385 A/chicken/Vietnam/NCVD-134/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI254278 A/feral pigeon/Hong Kong/3409/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI239869 A/turkey/England/50-92/1991 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI234500 A/quail/West Java/Smigq1/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI227301 A/Mallard/Huadong/hn/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222718 A/white-faced whistling duck/Nigeria/3927-1/2007 (A/H5N2) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222608 A/spur-winged goose/Nigeria/5388-8/2007 (A/H5N2) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222607 A/spur-winged goose/Nigeria/5388-5/2007 (A/H5N2) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222606 A/spur-winged goose/Nigeria/5388-2/2007 (A/H5N2) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222476 A/pika/Qinghai/QW/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222018 A/environment/Hunan/2-16/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI222010 A/environment/Hunan/2-1/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI221994 A/environment/Hunan/1-35/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI221986 A/environment/Hunan/1-12/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180256 A/chicken/Vietnam/NCVD-swab26/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180255 A/chicken/Vietnam/NCVD-swab25/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180253 A/chicken/Vietnam/NCVD-swab20/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180252 A/chicken/Vietnam/NCVD-swab19/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180251 A/chicken/Vietnam/NCVD-swab16/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180250 A/chicken/Vietnam/NCVD-swab06/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180249 A/chicken/Vietnam/NCVD-05/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180248 A/chicken/Vietnam/NCVD-04/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180247 A/chicken/Vietnam/NCVD-093/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180246 A/chicken/Vietnam/NCVD-swab18/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180245 A/chicken/Vietnam/NCVD-swab17/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180244 A/chicken/Vietnam/NCVD-swab15/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI180243 A/chicken/Vietnam/NCVD-016/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI175819 A/chicken/Vietnam/NCVD-03/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI175641 A/chicken/Shanxi/2/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI174880 A/ostrich/Denmark/96-72420/1996 (A/H5N2) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI174803 A/chicken/Vietnam/NCVD-016/2008(H5N1)-PR8-IDCDC-RG12 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI173704 A/chicken/Vietnam/NCVD-016/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI168681 A/chicken/Hebei/706/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI168674 A/chicken/Hebei/102/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI168673 A/chicken/Hebei/126/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI164397 A/turkey/England/N50-92/1991 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI164154 A/turkey/England/50-92/1991 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI158938 A/emu/NY/12716/1994 (A/H5N9) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI130520 A/turkey/England/50-92/1991 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI127726 A/chicken/Egypt/3052NAMRU3-CLEVB104/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI123832 A/Chicken/Indonesia/Lampung1631-23/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI108395 A/chicken/Hunan/2292/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI108393 A/chicken/Hunan/2246/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI107845 A/pheasant/Shantou/2239/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI101477 A/chicken/Hebei/326/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI100476 A/duck/Hunan/1652/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI100474 A/duck/Hunan/1608/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI100472 A/duck/Hunan/1265/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI1254 A/whooper swan/Mongolia/4/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI1252 A/whooper swan/Mongolia/3/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 11:26 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27522
Location: Pittsburgh, PA USA
G206A

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340810 A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340790 A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340788 A/chicken/Klaten/BBVW-109-II/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340786 A/chicken/Jombang/BBVW-166-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340784 A/chicken/Sleman/BBVW-150-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340780 A/chicken/Lamongan/BBVW-170-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340774 A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340766 A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI324615 A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI324340 A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI307911 A/chicken/Indonesia/SmiWN18/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI225005 A/chicken/Korea/IS/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI171652 A/chicken/Germany/R3294/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI171620 A/Peking duck/Germany/R1959/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI164763 A/Indonesia/7272/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI164208 A/Indonesia/8228/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI162940 A/Indonesia/7261/2008 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI127738 A/chicken/Egypt/9387NAMRU3-CLEVB148/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI127736 A/chicken/Egypt/9386NAMRU3-CLEVB136/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI127734 A/chicken/Egypt/9385NAMRU3-CLEVB125/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI127724 A/chicken/Egypt/3051NAMRU3-CLEVB78/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI126326 A/environment/Korea/W150/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI126288 A/quail/Korea/KJ4/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI126231 A/chicken/Korea/IS3/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI126193 A/chicken/Korea/IS2/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI124290 A/Indonesia/321H/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI123740 A/Chicken/Papua/TA5/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI123738 A/Chicken/Papua/TB1/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI123736 A/Chicken/Papua/TB15/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI120010 A/Indonesia/TLL013/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI120002 A/Indonesia/TLL009/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI119990 A/Indonesia/TLL003/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI115440 A/chicken/Egypt/1892N3-HK49/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI114806 A/chicken/Tula/4/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI106408 A/chicken/Tambov/570-2/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI101907 A/duck/Guangxi/13/2004 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI101891 A/chicken/Guangxi/12/2004 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI100528 A/duck/Vietnam/568/2005 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI97201 A/Chicken/Yunnan/493/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI97199 A/Chicken/Yunnan/447/05 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI55776 A/Indonesia/CDC1047S/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI55757 A/Indonesia/CDC1047/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI55738 A/Indonesia/CDC1046T/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI55719 A/Indonesia/CDC1046/2007 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI41160 A/Indonesia/CDC390/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI41158 A/Indonesia/CDC370T/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI41156 A/Indonesia/CDC370P/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI41154 A/Indonesia/CDC370E/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI41152 A/Indonesia/CDC370/2006 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI13968 A/chicken/China/1204/04 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)

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niman
PostPosted: Tue Nov 08, 2011 11:30 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27522
Location: Pittsburgh, PA USA
T213C

EPI341633 A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341632 A/Indonesia/NIHRD11766/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI341332 A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340810 A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340790 A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340788 A/chicken/Klaten/BBVW-109-II/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340786 A/chicken/Jombang/BBVW-166-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340784 A/chicken/Sleman/BBVW-150-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340782 A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340780 A/chicken/Lamongan/BBVW-170-III/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340778 A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340776 A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI340768 A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI324340 A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI307911 A/chicken/Indonesia/SmiWN18/2009 (A/H5N1) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272141 A/duck/Hubei/QG5/2008 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)
EPI272140 A/duck/Hubei/QF11/2008 (A/H5) segment 4 (HA) 27.0 7.211747e+00 14/14 (100%)

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