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PostPosted: Tue Jul 31, 2012 2:33 pm 
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The recent publication entitled "Emergence of Fatal Avian Influenza in New England Harbor Seals" in mbio by scientists at Columbia note the acquisition of D701N in the PB2 gene. However, the flaking sequences match canie and equine isolates as does a cluster of polymorphisms signaling recombination.

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PostPosted: Tue Jul 31, 2012 2:34 pm 
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Location: Pittsburgh, PA USA
Emergence of Fatal Avian Influenza in New England Harbor Seals
S. J. Anthonya,b, J. A. St. Legerc, K. Pugliaresd, H. S. Ipe, J. M. Chanf, Z. W. Carpenterf, I. Navarrete-Maciasa, M. Sanchez-Leona, J. T. Salikig, J. Pedersenh, W. Kareshb, P. Daszakb, R. Rabadanf, T. Rowlesi, and W. I. Lipkina
+ Author Affiliations

Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USAa;
EcoHealth Alliance, New York, New York, USAb;
SeaWorld, San Diego, California, USAc;
New England Aquarium, Boston, Massachusetts, USAd;
National Wildlife Health Center, United States Geological Survey, Madison, Wisconsin, USAe;
Center for Computational Biology and Bioinformatics, Department of Biomedical Informatics, Columbia University, New York, New York, USAf;
Athens Veterinary Diagnostic Laboratory, University of Georgia, Athens, Georgia, USAg;
National Veterinary Services Laboratory, United States Department of Agriculture, Washington, DC, USAh; and
National Oceanic and Atmospheric Administration, Washington, DC, USAi
Address correspondence to S. J. Anthony, sja2127@columbia.edu, or W. I. Lipkin, wil2001@columbia.edu; for questions on computational modeling, contact R. Rabadan, rabadan@dbmi.columbia.edu.
Editor Anne Moscona, Weill Medical College, Cornell University
ABSTRACT
From September to December 2011, 162 New England harbor seals died in an outbreak of pneumonia. Sequence analysis of postmortem samples revealed the presence of an avian H3N8 influenza A virus, similar to a virus circulating in North American waterfowl since at least 2002 but with mutations that indicate recent adaption to mammalian hosts. These include a D701N mutation in the viral PB2 protein, previously reported in highly pathogenic H5N1 avian influenza viruses infecting people. Lectin staining and agglutination assays indicated the presence of the avian-preferred SAα-2,3 and mammalian SAα-2,6 receptors in seal respiratory tract, and the ability of the virus to agglutinate erythrocytes bearing either the SAα-2,3 or the SAα-2,6 receptor. The emergence of this A/harbor seal/Massachusetts/1/2011 virus may herald the appearance of an H3N8 influenza clade with potential for persistence and cross-species transmission.

IMPORTANCE The emergence of new strains of influenza virus is always of great public concern, especially when the infection of a new mammalian host has the potential to result in a widespread outbreak of disease. Here we report the emergence of an avian influenza virus (H3N8) in New England harbor seals which caused an outbreak of pneumonia and contributed to a U.S. federally recognized unusual mortality event (UME). This outbreak is particularly significant, not only because of the disease it caused in seals but also because the virus has naturally acquired mutations that are known to increase transmissibility and virulence in mammals. Monitoring the spillover and adaptation of avian viruses in mammalian species is critically important if we are to understand the factors that lead to both epizootic and zoonotic emergence.

Footnotes
S.J.A. and J.A.S.L. contributed equally to the study.
T.R. and W.I.L. are joint senior authors.
Citation Anthony SJ, et al. 2012. Emergence of fatal avian influenza in New England harbor seals. mBio 3(4):e00166-12. doi:10.1128/mBio.00166-12.
Received 31 May 2012 Accepted 29 June 2012 Published 31 July 2012

http://mbio.asm.org/content/3/4/e00166-12

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PostPosted: Tue Jul 31, 2012 2:40 pm 
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Joined: Wed Aug 19, 2009 10:42 am
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Location: Pittsburgh, PA USA
G2101A (D701N)
EPI361697 A/swine/Italy/259543/2003 (A/H1N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI332926 A/equine/New Market/1/1979 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI332921 A/equine/New Market/nasalwash1/1979 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI314454 A/equine/Tottori/1/07 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI306426 A/swine/Sweden/9706/2010 (A/H1N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289619 A/canine/NY/dog3c15/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289618 A/canine/NY/dog4c06/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289617 A/canine/NY/dog4c13/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289616 A/canine/NY/dog4c07/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281640 A/canine/New York/158402-1/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281632 A/canine/New York/145353/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281624 A/canine/Pennsylvania/137154/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281616 A/canine/New York/51854/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281608 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281600 A/equine/New York/146066/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281592 A/equine/Virginia/131054-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281584 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281576 A/canine/Pennsylvania/94930-3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281568 A/canine/New York/115719/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281560 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281552 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281544 A/equine/Montana/9233/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281536 A/canine/Pennsylvania/10915/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281528 A/canine/Pennsylvania/10909/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281520 A/canine/Pennsylvania/16699/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281512 A/canine/Kentucky/118778/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281504 A/canine/New York/147926-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281496 A/canine/New York/147926-3/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281488 A/canine/New York/100528-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281480 A/canine/New York/100528-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281472 A/canine/New York/100528-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281464 A/canine/New York/100525-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281456 A/canine/Florida/89911-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281448 A/canine/Florida/78592-7/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281440 A/canine/Florida/78592-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281432 A/canine/Florida/78592-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281424 A/canine/California/70645-4/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281416 A/canine/Colorado/30604/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281408 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281400 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281392 A/canine/Colorado/8880/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281384 A/canine/New York/4986-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281376 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281368 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281360 A/equine/Ohio/113461-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281352 A/equine/Ohio/113461-1/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281344 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281336 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281328 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281320 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281312 A/canine/New York/115809/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI273622 A/Wisconsin/51/2009 (A/H1N1 pdm09) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI243544 A/equine/Huabei/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242936 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242935 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242934 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242933 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242932 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242931 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242929 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242926 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242923 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242777 A/SC35M (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242350 A/equine/Kascakew/1/1978 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI241737 A/Hong Kong/33982/2009 (A/H9N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240124 A/equine/Kentucky/211/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240117 A/equine/Kentucky/1/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239740 A/equine/Newmarket/2/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239734 A/equine/Newmarket/1/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI235162 A/equine/Newmarket/5/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226913 A/canine/Miami/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226907 A/canine/Jacksonville/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186931 A/equine/Xinjiang/5/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186923 A/equine/Xinjiang/4/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186915 A/equine/Xinjiang/3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186907 A/equine/Xinjiang/2/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186899 A/equine/Xinjiang/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186891 A/equine/Qinghai/1/1994 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186883 A/equine/Inner Mongolia/8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186875 A/equine/Liaoning/9/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186867 A/equine/Heilongjiang/10/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186859 A/equine/Hubei/6/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186851 A/equine/Gansu/7/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI179452 A/swine/Chibi/01/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI179444 A/swine/Anhui/01/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI171275 A/equine/Argentina/1/1977 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI171267 A/equine/Uruguay/1063/1976 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI171259 A/equine/Sao Paulo/4/1976 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI171251 A/equine/Kentucky/1a/1975 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI165408 A/equine/Sachiyama/1/1971 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI159287 A/equine/France/1/1967 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI159279 A/equine/Switzerland/2225/1979 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI156264 A/equine/Johannesburg/1/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI156248 A/equine/Kentucky/2/1980 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154467 A/equine/Sussex/93753/89 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154033 A/equine/Uruguay/1/1963 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154025 A/equine/Berlin/1/1989 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154017 A/equine/Fontainbleu/1/1979 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154009 A/equine/Sao Paulo/1/1969 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154001 A/equine/Romania/1/1980 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153993 A/equine/Switzerland/1118/1979 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153985 A/equine/Italy/1062/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153977 A/equine/Roma/5/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153969 A/equine/Switzerland/173/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153961 A/equine/Austria/421/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153953 A/equine/Italy/1199/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153945 A/equine/Italy/824/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153937 A/equine/Santa Fe/1/1985 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153929 A/equine/Cordoba/18/1985 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153921 A/equine/Sao Paulo/6/1963 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153857 A/equine/Kentucky/3/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153849 A/equine/Kentucky/2/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI152776 A/equine/Kentucky/2/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI139459 A/equine/Cornell/16/74 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137792 A/equine/California/8560/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137773 A/equine/California/4537/1997 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137545 A/equine/Kentucky/Rosie100/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133349 A/equine/New York/1/1983 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133292 A/equine/Kentucky/8/1994 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133273 A/equine/Kentucky/1/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133254 A/equine/Tennessee/5/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133235 A/equine/Alaska/29759/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133216 A/equine/Kentucky/1/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133197 A/equine/Texas/39655/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133178 A/equine/Kentucky/1277/1990 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133159 A/equine/Kentucky/698/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133140 A/equine/Kentucky/694/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133121 A/equine/Kentucky/692/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133102 A/equine/Kentucky/1/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133083 A/equine/Kentucky/1/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133064 A/equine/California/83/1982 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133045 A/equine/Kentucky/3/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI130339 A/equine/Kentucky/2/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI130327 A/equine/London/1416/1973 (A/H7N7) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI115398 A/Puerto Rico/8/34 (A/H1N1 seasonal) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98537 A/equine/California/191/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98535 A/equine/Massachussetts/213/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98533 A/equine/New York/452/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98531 A/equine/New York/1/1999 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98529 A/equine/Kentucky/5/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98527 A/equine/Ohio/1/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98477 A/canine/Florida/242/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98461 A/canine/Florida/43/2004 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI78012 A/equine/New York/VR-297/1983 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77993 A/equine/California/103/1982 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77974 A/equine/Kentucky/magnificent_genius1/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77955 A/equine/Georgia/13/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77936 A/equine/Georgia/10/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77917 A/equine/Georgia/9/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77898 A/equine/Georgia/3/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77879 A/equine/Georgia/1/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77860 A/equine/Kentucky/bitter_boredom5/1976 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77841 A/equine/Kentucky/pass_the_pepper1/1976 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77822 A/equine/Miami/1/1963 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77784 A/equine/Kentucky/2/1981 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77765 A/equine/California/1/1980 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77746 A/equine/Kentucky/4/1980 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI77727 A/equine/Kentucky/1/1978 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI52084 A/equine/Idaho/37875/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI25736 A/equine/Kentucky/5/02 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)

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PostPosted: Tue Jul 31, 2012 2:42 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
C768T/C774T/G777A combination

EPI363896 A/duck/Guangxi/1533/2007 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI363492 A/duck/Guangxi/3333/2006 (A/H6N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI363484 A/duck/Guangxi/2736/2006 (A/H6N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI363476 A/duck/Guangxi/2140/2006 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI363468 A/duck/Guangxi/1248/2006 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI363460 A/duck/Guangxi/1157/2006 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI347192 A/equine/Athens/04/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI347191 A/equine/Athens/02/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI345258 A/shorebird/Delaware Bay/275/1994 (A/H0) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI325491 A/Taiwan/6723/2008 (A/H1N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI314454 A/equine/Tottori/1/07 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI296615 A/mallard/Sweden/90/2005 (A/H11N9) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI296543 A/mallard/Netherlands/20/2005 (A/H12N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI292710 A/duck/Thailand/CU5408/2009 (A/H11N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI292702 A/duck/Thailand/CU5388/2009 (A/H11N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289221 A/canine/NY/dog23/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289220 A/canine/NY/dog4/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281640 A/canine/New York/158402-1/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281632 A/canine/New York/145353/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281624 A/canine/Pennsylvania/137154/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281616 A/canine/New York/51854/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281608 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281600 A/equine/New York/146066/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281592 A/equine/Virginia/131054-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281584 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281576 A/canine/Pennsylvania/94930-3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281568 A/canine/New York/115719/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281560 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281552 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281544 A/equine/Montana/9233/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281536 A/canine/Pennsylvania/10915/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281528 A/canine/Pennsylvania/10909/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281520 A/canine/Pennsylvania/16699/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281512 A/canine/Kentucky/118778/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281504 A/canine/New York/147926-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281496 A/canine/New York/147926-3/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281488 A/canine/New York/100528-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281480 A/canine/New York/100528-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281472 A/canine/New York/100528-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281464 A/canine/New York/100525-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281456 A/canine/Florida/89911-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281448 A/canine/Florida/78592-7/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281440 A/canine/Florida/78592-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281432 A/canine/Florida/78592-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281416 A/canine/Colorado/30604/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281408 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281400 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281392 A/canine/Colorado/8880/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281384 A/canine/New York/4986-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281376 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281368 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281360 A/equine/Ohio/113461-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281352 A/equine/Ohio/113461-1/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281344 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281336 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281328 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281320 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281312 A/canine/New York/115809/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI272774 A/duck/Denmark/53-147-8/2008 (A/H7N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI262712 A/aquatic bird/Korea/w347/2008 (A/H5N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI243544 A/equine/Huabei/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242978 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242970 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242955 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242936 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242935 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242934 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242933 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242907 A/equine (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI241782 A/equine/Yokohama/aq19/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240687 A/equine/La Plata/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240679 A/equine/Hokkaido/I828/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240130 A/equine/Sussex/1/1989 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI240124 A/equine/Kentucky/211/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239740 A/equine/Newmarket/2/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239734 A/equine/Newmarket/1/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI238715 A/equine/Avesta/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI238589 A/mallard/Minnesota/354/1999 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI235162 A/equine/Newmarket/5/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226913 A/canine/Miami/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226907 A/canine/Jacksonville/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI221853 A/chicken/Zhejiang/HJ/2007 (A/H9N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI190347 A/mallard/Netherlands/1/2006 (A/H8N4) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186931 A/equine/Xinjiang/5/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186923 A/equine/Xinjiang/4/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186915 A/equine/Xinjiang/3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186907 A/equine/Xinjiang/2/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186899 A/equine/Xinjiang/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186891 A/equine/Qinghai/1/1994 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186883 A/equine/Inner Mongolia/8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186875 A/equine/Liaoning/9/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186867 A/equine/Heilongjiang/10/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186859 A/equine/Hubei/6/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186851 A/equine/Gansu/7/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI179452 A/swine/Chibi/01/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI179444 A/swine/Anhui/01/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI169334 A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI158623 A/mallard/MN/99/2000 (A/H3N6) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI156264 A/equine/Johannesburg/1/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154467 A/equine/Sussex/93753/89 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154459 A/equine/Sussex/1/1989 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI154025 A/equine/Berlin/1/1989 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153985 A/equine/Italy/1062/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153977 A/equine/Roma/5/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153969 A/equine/Switzerland/173/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153961 A/equine/Austria/421/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153953 A/equine/Italy/1199/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153945 A/equine/Italy/824/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153937 A/equine/Santa Fe/1/1985 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153929 A/equine/Cordoba/18/1985 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153857 A/equine/Kentucky/3/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153849 A/equine/Kentucky/2/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI153110 A/equine/Mongolia/1/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI152776 A/equine/Kentucky/2/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI140298 A/duck/Malaysia/F59/2004 (A/H5N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137792 A/equine/California/8560/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137773 A/equine/California/4537/1997 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133292 A/equine/Kentucky/8/1994 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133273 A/equine/Kentucky/1/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133254 A/equine/Tennessee/5/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133235 A/equine/Alaska/29759/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133216 A/equine/Kentucky/1/1992 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133197 A/equine/Texas/39655/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133178 A/equine/Kentucky/1277/1990 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133159 A/equine/Kentucky/698/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133140 A/equine/Kentucky/694/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133121 A/equine/Kentucky/692/1988 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133102 A/equine/Kentucky/1/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI133083 A/equine/Kentucky/1/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI130339 A/equine/Kentucky/2/1986 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI99392 A/equine/Wisconsin/1/03 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98537 A/equine/California/191/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98535 A/equine/Massachussetts/213/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98533 A/equine/New York/452/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98531 A/equine/New York/1/1999 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98529 A/equine/Kentucky/5/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98527 A/equine/Ohio/1/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98477 A/canine/Florida/242/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98461 A/canine/Florida/43/2004 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI88039 A/pintail duck/ALB/169/1980 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI85805 A/mallard duck/ALB/676/1979 (A/H3N6) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI71780 A/swine/Wisconsin/1/1957 (A/H1N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI52084 A/equine/Idaho/37875/1991 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI25736 A/equine/Kentucky/5/02 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI3520 A/equine/Kanazawa/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI1173 A/duck/Yokohama/aq10/2003 (A/H5N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)

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PostPosted: Tue Jul 31, 2012 2:49 pm 
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Location: Pittsburgh, PA USA
LOCUS JQ433876 2279 bp cRNA linear VRL 31-JUL-2012
DEFINITION Influenza A virus (A/harbor seal/Massachusetts/1/2011(H3N8))
segment 1 polymerase PB2 (PB2) gene, partial cds.
ACCESSION JQ433876
VERSION JQ433876.1 GI:395618056
KEYWORDS .
SOURCE Influenza A virus (A/harbor seal/Massachusetts/1/2011(H3N8))
ORGANISM Influenza A virus (A/harbor seal/Massachusetts/1/2011(H3N8))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 2279)
AUTHORS Anthony,S.J., St. Leger,J.A., Pugliares,K., Ip,H.S., Chan,J.M.,
Carpenter,Z.W., Navarrete-Macias,I., Sanchez-Leon,M., Saliki,J.T.,
Pedersen,J., Karesh,W., Daszak,P., Rabadan,R., Rowles,T. and
Lipkin,W.I.
TITLE Emergence of Fatal Avian Influenza in New England Harbor Seals
JOURNAL MBio 3 (4), E00166-12 (2012)
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2279)
AUTHORS Anthony,S.J.
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2012) Center for Infection and Immunity, Columbia
University, 722 West 168th Street, New York, NY 10032, USA
COMMENT GenBank Accession Numbers JQ433876-JQ433883 represent sequences
from the 8 segments of Influenza A virus (A/harbor
seal/Massachusetts/1/2011(H3N8)).
FEATURES Location/Qualifiers
source 1..2279
/organism="Influenza A virus (A/harbor
seal/Massachusetts/1/2011(H3N8))"
/mol_type="viral cRNA"
/strain="A/harbor seal/Massachusetts/1/2011"
/serotype="H3N8"
/host="Phoca vitulina"
/db_xref="taxon:1136533"
/segment="1"
/country="USA"
/collection_date="Sep-2011"
/collected_by="K.Pugliares"
gene 1..>2279
/gene="PB2"
CDS 1..>2279
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="AFA51731.1"
/db_xref="GI:395618057"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITANKRIMEMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDMNPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRATVSADP
LASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTS
GSSVKREEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRRATRRLVQLIVSGRDEQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IEPIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQ
DPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEG
TAGVESAVLRGFLILGKENKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
ORIGIN
1 atggagagaa taaaagaact gagagatcta atgtcacagt ctcgcactcg cgagatactc
61 accaaaacca ctgtggacca catggccata ataaagaagt acacatcagg aaggcaagag
121 aagaaccctg cacttaggat gaagtggatg atggcaatga aatatccaat tacagcaaac
181 aagagaataa tggaaatgat tcctgaaagg aatgaacagg gacaaaccct ttggagcaaa
241 acaaatgatg ctggctcaga ccgagtgatg gtatcacctc tggccgtgac atggtggaat
301 aggaatggac caacaactag tacagttcat tatccgaagg tatataaaac ttatttcgaa
361 aaagtcgaaa ggttgaaaca cgggaccttt ggccctgtcc acttcagaaa tcaagttaaa
421 ataagacgga gggttgacat gaaccctggc cacgcagacc tcagtgccaa agaggcacag
481 gatgtaatca tggaagtcgt tttcccaaat gaagtggggg cgaggatact aacctcggag
541 tcacaactga cgataacaaa agaaaagaag gaagaactcc aggactgcaa gattgcccct
601 ttgatggttg catatatgct ggaaagagag ttggtccgta aaacgaggtt cctcccagtg
661 gctggtggga cgagcagtgt ctacattgag gtgctgcatt tgactcaggg gacatgctgg
721 gagcaaatgt acaccccagg aggggaagtg aggaatgatg atgttgatca aagtttaatt
781 atcgctgcca ggaacatagt aagaagagca acagtatcag cagacccact agcatctcta
841 ttggaaatgt gccacagcac acagatcgga gggataagga tggtagacat tcttcggcag
901 aatccaacag aggaacaagc agtggacata tgcaaagcag caatgggctt aaggattagc
961 tcatccttca gctttggcgg atttactttc aaaagaacaa gcgggtcgtc agttaagaga
1021 gaagaagaag tgcttacggg caaccttcaa acattgaaaa taagagtaca tgaagggtat
1081 gaggagttca caatggttgg aagaagagca acagccatcc tcaggagggc aaccagaaga
1141 ttggtccaac taattgtaag tgggagagac gagcagtcaa ttgctgaagc aataattgtg
1201 gccatggtat tttcacaaga ggattgtatg atcaaagcag ttcgaggtga tctgaacttt
1261 gtcaataggg caaatcagcg attaaaccca atgcatcaac tcttgagaca cttccaaaag
1321 gatgccaaag tgcttttcca gaactgggga attgaaccca ttgacaatgt aatgggaatg
1381 atcgggatat tgcccgacat gaccccaagt actgaaatgt cgctgagggg gataagagtc
1441 agtaagatgg gagttgacga atactccagc acagagagag tagtagtgag cattgaccga
1501 tttttaagag tccgggacca acggggaaat gtgttattgt cgcctgaaga ggtcagcgag
1561 acacaaggga cagagaagct gacaataact tattcgtcat caatgatgtg ggagataaat
1621 ggtcctgaat cggttttggt caatacttac cagtggatca tcagaaactg ggaaactgtg
1681 aaaattcaat ggtcacagga ccccacgatg ttatataaca agatggaatt cgagccattt
1741 cagtccctgg tccctaaggc agccagaggt cagtacagtg gatttgtgag gacactgttc
1801 cagcaaatgc gggatgtgct tggaacattc gacactgttc agataataaa acttctaccc
1861 tttgctgctg ctccaccaga acaaagtagg atgcagttct cctccttgac tgtgaatgtg
1921 aggggatcag gaatgagaat actagtaagg ggcaattctc cagtgttcaa ctacaataag
1981 gccactaaga ggcttacagt tctcggaaaa gatgcaggtg cattgaccga agatccagat
2041 gaaggcacgg ctggagtaga gtctgctgtt ttgagaggat tcctcatctt gggcaaagaa
2101 aacaagagat atggcccagc attgagcatc aatgaactga gcaaccttgc aaaaggagag
2161 aaggctaatg tgctaatcgg gcaaggagac gtagtgttgg taatgaaacg gaaacgggac
2221 tctagcatac ttactgacag ccagacagcg accaaaagaa ttcggatggc catcaatag

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PostPosted: Tue Jul 31, 2012 5:13 pm 
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Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/07311 ... ation.html

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PostPosted: Tue Jul 31, 2012 5:55 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
C135T

EPI370891 A/mallard/New York/66861/1978 (A/H2N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI370882 A/black duck/New Jersey/1580/1978 (A/H2N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI370021 A/mallard/New York/6750/1978 (A/H2N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI343037 A/blue-winged teal/Alberta/387/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI314454 A/equine/Tottori/1/07 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI314181 A/turkey/Ontario/6213/1966 (A/H0) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI314168 A/turkey/Massachusetts/3740/1965 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289221 A/canine/NY/dog23/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI289220 A/canine/NY/dog4/2009 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281640 A/canine/New York/158402-1/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281632 A/canine/New York/145353/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281624 A/canine/Pennsylvania/137154/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281616 A/canine/New York/51854/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281608 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281600 A/equine/New York/146066/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281592 A/equine/Virginia/131054-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281584 A/canine/Colorado/6723-8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281576 A/canine/Pennsylvania/94930-3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281568 A/canine/New York/115719/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281560 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281552 A/canine/Florida/61156-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281544 A/equine/Montana/9233/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281504 A/canine/New York/147926-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281496 A/canine/New York/147926-3/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281488 A/canine/New York/100528-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281480 A/canine/New York/100528-5/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281472 A/canine/New York/100528-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281464 A/canine/New York/100525-1/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281456 A/canine/Florida/89911-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281424 A/canine/California/70645-4/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281416 A/canine/Colorado/30604/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281408 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281400 A/canine/Colorado/17864/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281392 A/canine/Colorado/8880/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281384 A/canine/New York/4986-2/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281376 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281368 A/canine/New York/5183-6/2006 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281360 A/equine/Ohio/113461-3/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281352 A/equine/Ohio/113461-1/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281344 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281336 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281328 A/equine/Ohio/113461-2/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281320 A/equine/Texas/117793/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI281312 A/canine/New York/115809/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI280693 A/mallard/Kentucky/472048-2/2006 (A/H5N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI243544 A/equine/Huabei/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242720 A/turkey/Ontario/7732/1966 (A/H5N9) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI242658 A/turkey/Canada/1963 (A/H6N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239767 A/chicken/Victoria/9306-04-0930/1992 (A/H7N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239740 A/equine/Newmarket/2/1993 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239363 A/chicken/Pakistan/447/1995 (A/H7N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI239355 A/chicken/Pakistan/1369-CR2/1995 (A/H7N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI235730 A/chicken/Chile/184240-5/2002 (A/H7N3) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI235162 A/equine/Newmarket/5/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI228514 A/whiskered tern/Egypt/04/2004 (A/H6N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226913 A/canine/Miami/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI226907 A/canine/Jacksonville/2005 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186931 A/equine/Xinjiang/5/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186923 A/equine/Xinjiang/4/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186915 A/equine/Xinjiang/3/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186907 A/equine/Xinjiang/2/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186899 A/equine/Xinjiang/1/2007 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186883 A/equine/Inner Mongolia/8/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186875 A/equine/Liaoning/9/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186867 A/equine/Heilongjiang/10/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186859 A/equine/Hubei/6/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI186851 A/equine/Gansu/7/2008 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI184476 A/green-winged teal/Minnesota/Sg-00131/2007 (A/H3N2) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI159219 A/duck/LA/17G/1987 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI158379 A/duck/PA/486/1969 (A/H6N1) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137792 A/equine/California/8560/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI137773 A/equine/California/4537/1997 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI99392 A/equine/Wisconsin/1/03 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98537 A/equine/California/191/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98535 A/equine/Massachussetts/213/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98533 A/equine/New York/452/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98529 A/equine/Kentucky/5/2002 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98527 A/equine/Ohio/1/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98477 A/canine/Florida/242/2003 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI98461 A/canine/Florida/43/2004 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI43285 A/turkey/Ontario/7732/1966 (A/H5N9) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)
EPI25736 A/equine/Kentucky/5/02 (A/H3N8) segment 1 (PB2) 27.0 8.439672e+00 14/14 (100%)

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